Wall clock time and date at job start Wed Apr 1 2020 04:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99729 * 2 1 4 4 H 1.48503 * 109.47257 * 270.00151 * 3 2 1 5 5 H 1.48500 * 109.46972 * 30.00466 * 3 2 1 6 6 H 1.48498 * 109.46838 * 149.99893 * 3 2 1 7 7 C 1.38794 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99647 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00224 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47154 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00526 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00066 * 179.97438 * 11 10 9 14 14 C 1.39918 * 120.00390 * 185.20876 * 13 11 10 15 15 C 1.38942 * 120.03767 * 33.64780 * 14 13 11 16 16 C 1.38132 * 120.05569 * 179.97438 * 15 14 13 17 17 C 1.38185 * 120.14074 * 0.02562 * 16 15 14 18 18 C 1.38855 * 120.07629 * 359.70816 * 17 16 15 19 19 N 1.40196 * 120.03150 * 180.29783 * 18 17 16 20 20 C 1.34147 * 118.70499 * 88.99525 * 19 18 17 21 21 O 1.21221 * 119.35989 * 359.44485 * 20 19 18 22 22 C 1.50595 * 121.27271 * 179.19511 * 20 19 18 23 23 C 1.53247 * 109.07128 * 29.53980 * 22 20 19 24 24 C 1.53247 * 108.56338 * 304.20825 * 23 22 20 25 25 C 1.34141 * 118.70613 * 269.25829 * 19 18 17 26 26 O 1.21229 * 119.35804 * 0.54047 * 25 19 18 27 27 C 1.38721 * 119.93536 * 0.54654 * 18 17 16 28 28 H 0.97000 * 120.00698 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46965 * 59.99763 * 10 9 7 30 30 H 1.08998 * 109.47121 * 300.00285 * 10 9 7 31 31 H 0.97009 * 119.99628 * 5.21085 * 13 11 10 32 32 H 1.07996 * 119.96816 * 0.02562 * 15 14 13 33 33 H 1.08009 * 119.92342 * 180.02562 * 16 15 14 34 34 H 1.07996 * 119.96205 * 179.97438 * 17 16 15 35 35 H 1.08996 * 109.71363 * 269.57195 * 22 20 19 36 36 H 1.09000 * 109.47130 * 149.35324 * 22 20 19 37 37 H 1.08995 * 109.61989 * 184.48476 * 23 22 20 38 38 H 1.09005 * 109.62347 * 63.92808 * 23 22 20 39 39 H 1.09000 * 109.52162 * 295.70539 * 24 23 22 40 40 H 1.09003 * 109.56940 * 175.55318 * 24 23 22 41 41 H 1.08000 * 120.07068 * 179.75237 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3026 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 -0.0003 14 6 2.3575 -7.6503 -0.1097 15 6 1.2256 -7.9093 -0.8727 16 6 0.7450 -9.1998 -0.9814 17 6 1.3874 -10.2365 -0.3318 18 6 2.5223 -9.9849 0.4277 19 7 3.1770 -11.0383 1.0813 20 6 4.1373 -11.7063 0.4247 21 8 4.4074 -11.3919 -0.7145 22 6 4.8900 -12.8357 1.0773 23 6 3.9804 -13.5145 2.1071 24 6 3.4879 -12.4537 3.0973 25 6 2.8148 -11.3420 2.3366 26 8 1.9288 -10.7088 2.8693 27 6 3.0046 -8.6894 0.5434 28 1 -0.4851 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8894 30 1 3.1245 -3.7313 -0.8905 31 1 3.7985 -6.1856 0.0753 32 1 0.7216 -7.1012 -1.3819 33 1 -0.1349 -9.3988 -1.5755 34 1 1.0090 -11.2443 -0.4185 35 1 5.7776 -12.4462 1.5759 36 1 5.1864 -13.5607 0.3193 37 1 4.5410 -14.2816 2.6412 38 1 3.1275 -13.9664 1.6006 39 1 4.3354 -12.0534 3.6537 40 1 2.7769 -12.9034 3.7904 41 1 3.8848 -8.4906 1.1368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322393666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:11 Heat of formation + Delta-G solvation = -93.963224 kcal Electronic energy + Delta-G solvation = -26886.209649 eV Core-core repulsion = 22856.656338 eV Total energy + Delta-G solvation = -4029.553311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.09627 -41.52984 -39.94657 -39.44959 -36.68781 -36.24765 -35.20856 -34.60852 -32.02778 -31.19325 -29.70321 -29.64353 -27.68631 -25.38458 -24.42931 -23.90373 -23.51620 -21.87180 -20.00085 -19.87526 -18.87430 -18.31906 -18.28008 -17.65513 -17.46536 -17.36760 -16.90022 -16.62864 -16.10382 -15.97680 -15.74242 -15.45186 -15.38283 -15.14939 -14.90809 -14.77262 -14.53608 -14.14811 -13.74476 -13.63772 -13.29228 -13.22832 -13.12387 -12.90856 -12.83160 -12.64259 -12.25391 -11.97201 -11.78248 -11.62752 -11.34212 -11.29624 -11.16296 -11.12450 -11.01030 -10.33021 -10.08042 -9.34668 -8.70450 -8.37003 -6.15757 -0.00868 0.09992 0.48135 1.16475 1.36121 1.41332 1.42644 1.45289 1.54802 1.69517 2.05915 2.24264 2.52575 2.97462 3.12513 3.23453 3.60580 3.64690 3.78297 3.78833 3.90417 3.91859 3.95427 4.10505 4.21028 4.30271 4.35391 4.38735 4.45348 4.60534 4.77655 4.87056 4.90550 5.03514 5.06698 5.11457 5.22293 5.23545 5.31521 5.40118 5.77977 5.86745 6.17613 6.22337 6.42355 6.72314 6.96662 7.04396 8.72177 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.025172 B = 0.001962 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.091447 B =14269.169745 C =14421.986100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.547 4.547 8 H 0.085 0.915 9 S -0.145 6.145 10 C -0.128 4.128 11 C 0.536 3.464 12 O -0.536 6.536 13 N -0.658 5.658 14 C 0.152 3.848 15 C -0.131 4.131 16 C -0.089 4.089 17 C -0.123 4.123 18 C 0.118 3.882 19 N -0.527 5.527 20 C 0.516 3.484 21 O -0.533 6.533 22 C -0.130 4.130 23 C -0.115 4.115 24 C -0.131 4.131 25 C 0.513 3.487 26 O -0.538 6.538 27 C -0.133 4.133 28 H 0.271 0.729 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.428 0.572 32 H 0.123 0.877 33 H 0.157 0.843 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.076 0.924 39 H 0.140 0.860 40 H 0.127 0.873 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.223 -32.655 4.800 36.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.082 5.918 10 C -0.279 4.279 11 C 0.324 3.676 12 O -0.412 6.412 13 N -0.306 5.306 14 C 0.056 3.944 15 C -0.151 4.151 16 C -0.108 4.108 17 C -0.143 4.143 18 C 0.029 3.971 19 N -0.268 5.268 20 C 0.309 3.691 21 O -0.407 6.407 22 C -0.169 4.169 23 C -0.152 4.152 24 C -0.170 4.170 25 C 0.307 3.693 26 O -0.412 6.412 27 C -0.154 4.154 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.268 0.732 32 H 0.141 0.859 33 H 0.174 0.826 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.094 0.906 39 H 0.158 0.842 40 H 0.145 0.855 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.813 -32.364 4.502 35.098 hybrid contribution 1.514 1.919 -0.226 2.455 sum 14.327 -30.444 4.276 33.918 Atomic orbital electron populations 1.70176 1.07979 1.28677 1.47900 1.26144 0.95987 1.03380 0.93710 0.84936 0.78193 0.75935 0.78806 1.19284 1.20346 1.18135 1.23201 0.95432 0.91811 1.58989 0.89690 1.85613 1.09947 0.99167 1.97090 1.23356 1.04044 0.93004 1.07509 1.20341 0.86182 0.86610 0.74476 1.90720 1.17016 1.85674 1.47763 1.43329 1.11452 1.02840 1.72988 1.17618 0.96182 0.84051 0.96527 1.21367 0.96896 0.98177 0.98685 1.21166 1.00043 0.90851 0.98695 1.21301 0.94813 1.00532 0.97625 1.17445 0.94664 0.87336 0.97626 1.44756 1.35752 1.30592 1.15702 1.22355 0.77534 0.83328 0.85859 1.90773 1.63757 1.66631 1.19548 1.22139 0.99558 0.93970 1.01245 1.21809 1.00222 0.97809 0.95402 1.22138 1.03663 0.92411 0.98745 1.22413 0.82003 0.85310 0.79608 1.90807 1.30844 1.52431 1.67074 1.20869 1.02585 0.91169 1.00819 0.91956 0.86560 0.86385 0.73248 0.85903 0.82574 0.84112 0.84167 0.85190 0.84486 0.90551 0.84241 0.85467 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16 2 C 0.01 0.72 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.55 -31.11 9.50 67.95 0.65 -30.46 16 8 H 0.09 4.46 7.80 -2.91 -0.02 4.44 16 9 S -0.15 -8.05 20.57 -56.49 -1.16 -9.22 16 10 C -0.13 -5.06 6.16 71.23 0.44 -4.62 16 11 C 0.54 20.51 7.58 87.65 0.66 21.17 16 12 O -0.54 -25.19 13.56 -3.05 -0.04 -25.23 16 13 N -0.66 -19.24 5.34 -303.55 -1.62 -20.87 16 14 C 0.15 4.67 6.27 38.14 0.24 4.90 16 15 C -0.13 -4.24 8.65 22.41 0.19 -4.05 16 16 C -0.09 -2.39 10.03 22.23 0.22 -2.17 16 17 C -0.12 -3.15 9.96 22.40 0.22 -2.93 16 18 C 0.12 3.10 3.46 38.07 0.13 3.23 16 19 N -0.53 -10.08 2.57 -580.75 -1.50 -11.57 16 20 C 0.52 8.00 7.44 87.72 0.65 8.65 16 21 O -0.53 -13.04 16.90 -2.85 -0.05 -13.09 16 22 C -0.13 -0.31 6.08 29.90 0.18 -0.13 16 23 C -0.12 0.16 6.08 30.76 0.19 0.34 16 24 C -0.13 -0.46 6.07 29.89 0.18 -0.28 16 25 C 0.51 8.75 7.45 87.72 0.65 9.41 16 26 O -0.54 -14.88 16.90 -2.87 -0.05 -14.93 16 27 C -0.13 -3.62 9.88 22.51 0.22 -3.40 16 28 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.12 4.07 8.14 -2.40 -0.02 4.05 16 30 H 0.12 4.13 8.14 -2.40 -0.02 4.11 16 31 H 0.43 9.00 8.82 -92.70 -0.82 8.18 16 32 H 0.12 4.48 6.43 -2.91 -0.02 4.46 16 33 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 34 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.14 -0.33 8.14 -2.39 -0.02 -0.35 16 36 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.14 -1.08 8.14 -2.39 -0.02 -1.10 16 38 H 0.08 0.01 8.14 -2.38 -0.02 -0.01 16 39 H 0.14 -0.17 8.14 -2.39 -0.02 -0.18 16 40 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -91.15 370.74 3.47 -87.68 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.27 Total: 16.53 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 5.30 Total: 0.86 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -2.83 Total: -88.28 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.14 Total: -53.26 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.22 kcal Total: -91.15 3.47 -87.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322393666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.279 kcal (2) G-P(sol) polarization free energy of solvation -91.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds