Wall clock time and date at job start Wed Apr 1 2020 05:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99853 * 2 1 4 4 H 1.48498 * 109.47326 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46825 * 299.99935 * 3 2 1 6 6 H 1.48500 * 109.47250 * 59.99997 * 3 2 1 7 7 C 1.38800 * 120.00406 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99980 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99635 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99866 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47179 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47251 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.47219 * 179.97438 * 12 11 10 14 14 C 1.34232 * 116.99821 * 179.97438 * 13 12 11 15 15 O 1.20823 * 119.99820 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99713 * 180.02562 * 14 13 12 17 17 H 1.09005 * 115.55012 * 298.20176 * 16 14 13 18 18 C 1.52984 * 117.49772 * 152.50387 * 16 14 13 19 19 C 1.53079 * 60.03580 * 252.50634 * 18 16 14 20 20 C 1.52923 * 117.39677 * 107.30979 * 19 18 16 21 21 C 1.53021 * 109.69718 * 81.20903 * 20 19 18 22 22 S 1.81558 * 109.19974 * 60.78593 * 21 20 19 23 23 O 1.42101 * 108.62905 * 188.78607 * 22 21 20 24 24 O 1.42098 * 108.67834 * 57.59679 * 22 21 20 25 25 C 1.81562 * 101.55883 * 303.17969 * 22 21 20 26 26 C 1.52929 * 117.39199 * 252.68876 * 19 18 16 27 27 H 0.97002 * 120.00208 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.47105 * 299.99548 * 10 9 7 29 29 H 1.08998 * 109.47128 * 60.00148 * 10 9 7 30 30 H 1.09003 * 109.47248 * 299.99669 * 11 10 9 31 31 H 1.09002 * 109.47257 * 60.00092 * 11 10 9 32 32 H 1.08995 * 109.46975 * 300.00328 * 12 11 10 33 33 H 1.09002 * 109.46828 * 59.99936 * 12 11 10 34 34 H 1.08999 * 117.49113 * 0.02562 * 18 16 14 35 35 H 1.09008 * 117.49416 * 145.00174 * 18 16 14 36 36 H 1.08993 * 109.43947 * 201.27726 * 20 19 18 37 37 H 1.09001 * 109.43355 * 321.14069 * 20 19 18 38 38 H 1.09003 * 109.52012 * 300.86509 * 21 20 19 39 39 H 1.09001 * 109.51653 * 180.70554 * 21 20 19 40 40 H 1.08995 * 109.51586 * 296.90407 * 25 22 21 41 41 H 1.08994 * 109.51401 * 176.73250 * 25 22 21 42 42 H 1.09000 * 109.43287 * 38.85973 * 26 19 18 43 43 H 1.09004 * 109.43285 * 158.72157 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9795 -5.3242 0.0012 12 6 3.1515 -6.3076 0.0005 13 8 2.6424 -7.6674 0.0018 14 6 3.5488 -8.6575 0.0008 15 8 4.7285 -8.3965 -0.0004 16 6 3.0950 -10.0945 0.0014 17 1 2.5111 -10.4028 0.8688 18 6 4.0294 -11.1306 -0.6260 19 6 2.7422 -10.7250 -1.3485 20 6 2.8804 -9.8454 -2.5918 21 6 3.2358 -10.7133 -3.8008 22 16 1.9083 -11.9199 -4.0805 23 8 2.3379 -12.8465 -5.0685 24 8 0.6877 -11.2176 -4.2707 25 6 1.8451 -12.7694 -2.4772 26 6 1.5987 -11.7402 -1.3719 27 1 -0.4850 0.8400 0.0004 28 1 3.1245 -3.7313 -0.8894 29 1 3.1245 -3.7313 0.8905 30 1 1.3712 -5.4840 0.8914 31 1 1.3706 -5.4846 -0.8886 32 1 3.7595 -6.1477 -0.8898 33 1 3.7608 -6.1473 0.8901 34 1 4.9726 -10.7729 -1.0389 35 1 4.0607 -12.1208 -0.1713 36 1 1.9377 -9.3313 -2.7790 37 1 3.6680 -9.1094 -2.4296 38 1 4.1714 -11.2390 -3.6094 39 1 3.3459 -10.0820 -4.6826 40 1 2.7922 -13.2778 -2.2968 41 1 1.0349 -13.4984 -2.4831 42 1 1.5449 -12.2480 -0.4089 43 1 0.6582 -11.2227 -1.5613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322672228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:34 Heat of formation + Delta-G solvation = -149.108944 kcal Electronic energy + Delta-G solvation = -25632.082010 eV Core-core repulsion = 21703.288601 eV Total energy + Delta-G solvation = -3928.793409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.094 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -41.13735 -39.20497 -37.40702 -36.74777 -36.43887 -33.62220 -33.28055 -32.61894 -32.46790 -27.22759 -25.99053 -25.61069 -24.67392 -24.35616 -21.40882 -20.87754 -20.09127 -18.97066 -17.97696 -17.43841 -17.41676 -16.92509 -16.86850 -16.56315 -16.11858 -15.55871 -14.91205 -14.83951 -14.61386 -14.46622 -14.19432 -13.77289 -13.66395 -13.49423 -13.00670 -12.85425 -12.77590 -12.58728 -12.49515 -12.43472 -12.38649 -12.17404 -11.88409 -11.42849 -11.34763 -11.20010 -11.04965 -11.01998 -10.88972 -10.80638 -10.67855 -10.59474 -10.45128 -10.36252 -9.65819 -9.10860 -8.38199 -6.59251 -6.27220 -3.98426 -0.45128 1.83291 2.19604 2.31587 2.82855 3.18808 3.19653 3.20778 3.27840 3.48971 3.54139 3.80327 3.84276 3.91349 4.01741 4.10689 4.17437 4.27866 4.52520 4.59906 4.62618 4.82639 4.89247 5.03261 5.09082 5.09599 5.09842 5.12017 5.20505 5.25356 5.33746 5.36525 5.41797 5.45286 5.52277 5.71596 5.83687 6.10203 6.33356 6.39881 6.61934 7.54518 7.56985 8.32590 9.19320 10.80951 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.001873 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.751220 B =14946.593915 C =15733.407947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.518 4.518 8 H 0.074 0.926 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.071 3.929 13 O -0.347 6.347 14 C 0.489 3.511 15 O -0.505 6.505 16 C -0.139 4.139 17 H 0.147 0.853 18 C -0.137 4.137 19 C -0.131 4.131 20 C -0.081 4.081 21 C -0.599 4.599 22 S 2.417 3.583 23 O -0.944 6.944 24 O -0.931 6.931 25 C -0.602 4.602 26 C -0.072 4.072 27 H 0.267 0.733 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.094 0.906 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 -29.115 -2.573 29.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.003 4.003 13 O -0.263 6.263 14 C 0.331 3.669 15 O -0.393 6.393 16 C -0.158 4.158 17 H 0.165 0.835 18 C -0.173 4.173 19 C -0.131 4.131 20 C -0.119 4.119 21 C -0.728 4.728 22 S 2.599 3.401 23 O -0.941 6.941 24 O -0.928 6.928 25 C -0.731 4.731 26 C -0.110 4.110 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.113 0.887 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.859 -29.201 -3.348 29.791 hybrid contribution 2.586 1.533 0.811 3.114 sum 7.446 -27.667 -2.537 28.764 Atomic orbital electron populations 1.70021 1.05925 1.27340 1.47132 1.25024 0.95102 0.99150 0.94524 0.86093 0.79631 0.81757 0.77924 1.19599 1.20525 1.20532 1.22730 0.94602 0.90647 1.58647 0.90802 1.84677 1.08692 0.99246 1.96875 1.23178 1.03488 0.96344 1.03307 1.21294 0.96380 0.91524 1.04451 1.23332 0.97909 0.76473 1.02631 1.86498 1.39995 1.16849 1.82996 1.22437 0.84403 0.87562 0.72468 1.90690 1.18564 1.84825 1.45223 1.21911 1.06325 0.88471 0.99048 0.83550 1.23352 0.94482 0.98694 1.00800 1.21893 0.98428 1.00190 0.92592 1.20923 1.05136 0.96695 0.89120 1.30147 1.19172 1.16117 1.07394 1.08080 0.77237 0.77330 0.77493 1.93603 1.83165 1.62075 1.55286 1.93619 1.41429 1.73193 1.84565 1.30154 1.11865 1.11246 1.19816 1.20860 0.97719 0.93269 0.99114 0.92269 0.91760 0.91760 0.90266 0.90228 0.91120 0.91066 0.86888 0.86586 0.88030 0.89392 0.84714 0.84246 0.84707 0.84330 0.88740 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 2 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 3 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.65 9.50 30.94 0.29 -14.35 16 8 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.12 -3.15 21.44 -107.50 -2.30 -5.46 16 10 C -0.11 -2.23 5.67 37.16 0.21 -2.01 16 11 C -0.10 -1.53 5.60 -26.73 -0.15 -1.68 16 12 C 0.07 0.97 5.47 37.16 0.20 1.17 16 13 O -0.35 -4.33 10.22 -39.26 -0.40 -4.73 16 14 C 0.49 5.45 5.98 36.00 0.22 5.66 16 15 O -0.50 -6.97 16.36 -18.75 -0.31 -7.27 16 16 C -0.14 -0.95 5.97 -91.72 -0.55 -1.50 16 17 H 0.15 0.69 8.14 -51.93 -0.42 0.27 16 18 C -0.14 -0.66 9.48 -26.70 -0.25 -0.91 16 19 C -0.13 -0.70 1.77 -154.48 -0.27 -0.97 16 20 C -0.08 -0.53 5.00 -26.76 -0.13 -0.66 16 21 C -0.60 -2.93 6.35 37.17 0.24 -2.69 16 22 S 2.42 15.30 5.27 -107.50 -0.57 14.73 16 23 O -0.94 -9.31 18.10 -57.82 -1.05 -10.35 16 24 O -0.93 -9.53 17.91 -57.82 -1.04 -10.56 16 25 C -0.60 -1.82 6.35 37.17 0.24 -1.58 16 26 C -0.07 -0.26 5.41 -26.75 -0.14 -0.41 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 29 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 33 H 0.07 0.96 8.13 -51.93 -0.42 0.53 16 34 H 0.11 0.65 7.93 -51.93 -0.41 0.23 16 35 H 0.12 0.27 8.14 -51.92 -0.42 -0.15 16 36 H 0.10 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.09 0.68 6.95 -51.93 -0.36 0.32 16 38 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 39 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.13 0.13 8.14 -51.93 -0.42 -0.30 16 41 H 0.14 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.09 0.19 8.09 -51.93 -0.42 -0.23 16 43 H 0.10 0.41 8.10 -51.93 -0.42 -0.01 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -37.93 384.42 -11.01 -48.95 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -6.65 Total: -4.43 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -0.20 Total: -18.04 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.73 Total: -24.95 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -2.79 Total: -32.92 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 12.15 SS G_CDS: -2.87 Total: 9.28 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.93 -11.01 -48.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322672228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.163 kcal (2) G-P(sol) polarization free energy of solvation -37.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds