Wall clock time and date at job start Wed Apr 1 2020 05:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99853 * 2 1 4 4 H 1.48498 * 109.47326 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46825 * 299.99935 * 3 2 1 6 6 H 1.48500 * 109.47250 * 59.99997 * 3 2 1 7 7 C 1.38800 * 120.00406 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99980 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99635 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99866 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47179 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47251 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.47219 * 179.97438 * 12 11 10 14 14 C 1.34232 * 116.99821 * 179.97438 * 13 12 11 15 15 O 1.20823 * 119.99820 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99713 * 180.02562 * 14 13 12 17 17 H 1.09005 * 115.55012 * 298.20176 * 16 14 13 18 18 C 1.52984 * 117.49772 * 152.50387 * 16 14 13 19 19 C 1.53079 * 60.03580 * 252.50634 * 18 16 14 20 20 C 1.52923 * 117.39677 * 107.30979 * 19 18 16 21 21 C 1.53021 * 109.69718 * 81.20903 * 20 19 18 22 22 S 1.81558 * 109.19974 * 60.78593 * 21 20 19 23 23 O 1.42101 * 108.62905 * 188.78607 * 22 21 20 24 24 O 1.42098 * 108.67834 * 57.59679 * 22 21 20 25 25 C 1.81562 * 101.55883 * 303.17969 * 22 21 20 26 26 C 1.52929 * 117.39199 * 252.68876 * 19 18 16 27 27 H 0.97002 * 120.00208 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.47105 * 299.99548 * 10 9 7 29 29 H 1.08998 * 109.47128 * 60.00148 * 10 9 7 30 30 H 1.09003 * 109.47248 * 299.99669 * 11 10 9 31 31 H 1.09002 * 109.47257 * 60.00092 * 11 10 9 32 32 H 1.08995 * 109.46975 * 300.00328 * 12 11 10 33 33 H 1.09002 * 109.46828 * 59.99936 * 12 11 10 34 34 H 1.08999 * 117.49113 * 0.02562 * 18 16 14 35 35 H 1.09008 * 117.49416 * 145.00174 * 18 16 14 36 36 H 1.08993 * 109.43947 * 201.27726 * 20 19 18 37 37 H 1.09001 * 109.43355 * 321.14069 * 20 19 18 38 38 H 1.09003 * 109.52012 * 300.86509 * 21 20 19 39 39 H 1.09001 * 109.51653 * 180.70554 * 21 20 19 40 40 H 1.08995 * 109.51586 * 296.90407 * 25 22 21 41 41 H 1.08994 * 109.51401 * 176.73250 * 25 22 21 42 42 H 1.09000 * 109.43287 * 38.85973 * 26 19 18 43 43 H 1.09004 * 109.43285 * 158.72157 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9795 -5.3242 0.0012 12 6 3.1515 -6.3076 0.0005 13 8 2.6424 -7.6674 0.0018 14 6 3.5488 -8.6575 0.0008 15 8 4.7285 -8.3965 -0.0004 16 6 3.0950 -10.0945 0.0014 17 1 2.5111 -10.4028 0.8688 18 6 4.0294 -11.1306 -0.6260 19 6 2.7422 -10.7250 -1.3485 20 6 2.8804 -9.8454 -2.5918 21 6 3.2358 -10.7133 -3.8008 22 16 1.9083 -11.9199 -4.0805 23 8 2.3379 -12.8465 -5.0685 24 8 0.6877 -11.2176 -4.2707 25 6 1.8451 -12.7694 -2.4772 26 6 1.5987 -11.7402 -1.3719 27 1 -0.4850 0.8400 0.0004 28 1 3.1245 -3.7313 -0.8894 29 1 3.1245 -3.7313 0.8905 30 1 1.3712 -5.4840 0.8914 31 1 1.3706 -5.4846 -0.8886 32 1 3.7595 -6.1477 -0.8898 33 1 3.7608 -6.1473 0.8901 34 1 4.9726 -10.7729 -1.0389 35 1 4.0607 -12.1208 -0.1713 36 1 1.9377 -9.3313 -2.7790 37 1 3.6680 -9.1094 -2.4296 38 1 4.1714 -11.2390 -3.6094 39 1 3.3459 -10.0820 -4.6826 40 1 2.7922 -13.2778 -2.2968 41 1 1.0349 -13.4984 -2.4831 42 1 1.5449 -12.2480 -0.4089 43 1 0.6582 -11.2227 -1.5613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322672228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:33 Heat of formation + Delta-G solvation = -174.677584 kcal Electronic energy + Delta-G solvation = -25633.190750 eV Core-core repulsion = 21703.288601 eV Total energy + Delta-G solvation = -3929.902148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.91433 -39.82106 -38.04419 -37.71435 -37.05475 -34.92420 -34.59666 -33.76653 -32.98565 -28.48304 -27.64783 -26.38997 -25.48974 -24.78012 -22.74945 -21.55512 -20.64899 -19.59727 -19.43432 -18.70275 -18.06108 -17.80181 -17.37141 -17.33759 -16.91425 -16.66759 -16.31712 -16.15889 -15.63812 -15.23816 -14.94905 -14.80673 -14.28520 -14.12288 -13.99633 -13.95908 -13.83745 -13.35644 -13.19708 -13.17315 -13.06144 -12.98811 -12.97598 -12.84990 -12.63041 -12.42251 -12.41227 -12.24933 -11.87895 -11.77615 -11.54738 -11.45001 -11.27409 -11.17427 -10.99010 -10.95016 -10.37297 -8.69700 -8.39559 -6.16144 -0.90562 1.01363 1.25713 1.37679 1.40910 1.51573 1.78038 1.81923 2.25425 2.37429 2.76765 2.95077 3.07459 3.24954 3.35566 3.40405 3.53000 3.64675 3.66290 3.81406 3.84349 3.95025 4.00866 4.12889 4.16352 4.27916 4.29724 4.42914 4.50748 4.59849 4.65733 4.75205 4.82574 4.86163 4.90025 4.99094 5.01316 5.07871 5.11251 5.20635 5.38725 5.42074 6.16567 6.64202 7.03083 8.69994 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.001873 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.751220 B =14946.593915 C =15733.407947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.074 0.926 9 S -0.186 6.186 10 C -0.091 4.091 11 C -0.086 4.086 12 C 0.080 3.920 13 O -0.353 6.353 14 C 0.486 3.514 15 O -0.536 6.536 16 C -0.155 4.155 17 H 0.174 0.826 18 C -0.120 4.120 19 C -0.126 4.126 20 C -0.089 4.089 21 C -0.591 4.591 22 S 2.410 3.590 23 O -0.987 6.987 24 O -0.982 6.982 25 C -0.575 4.575 26 C -0.074 4.074 27 H 0.272 0.728 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.154 0.846 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.161 0.839 39 H 0.139 0.861 40 H 0.169 0.831 41 H 0.160 0.840 42 H 0.128 0.872 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.738 -31.157 -1.323 32.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.687 4.687 8 H 0.092 0.908 9 S 0.043 5.957 10 C -0.240 4.240 11 C -0.125 4.125 12 C 0.004 3.996 13 O -0.269 6.269 14 C 0.330 3.670 15 O -0.426 6.426 16 C -0.173 4.173 17 H 0.191 0.809 18 C -0.156 4.156 19 C -0.127 4.127 20 C -0.127 4.127 21 C -0.721 4.721 22 S 2.598 3.402 23 O -0.984 6.984 24 O -0.979 6.979 25 C -0.708 4.708 26 C -0.112 4.112 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.172 0.828 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.179 0.821 39 H 0.157 0.843 40 H 0.187 0.813 41 H 0.177 0.823 42 H 0.146 0.854 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.274 -31.250 -2.142 31.945 hybrid contribution 2.186 2.086 0.465 3.058 sum 8.460 -29.163 -1.677 30.412 Atomic orbital electron populations 1.70148 1.07646 1.28571 1.47904 1.26070 0.96056 1.03129 0.93750 0.84957 0.78397 0.76645 0.78307 1.18710 1.19707 1.19626 1.23074 0.94807 0.91899 1.58911 0.90802 1.84656 1.13111 1.00884 1.97054 1.23063 1.00765 0.96587 1.03605 1.21106 0.97081 0.89833 1.04472 1.23023 0.96539 0.77153 1.02872 1.86499 1.40632 1.16524 1.83264 1.23367 0.83856 0.88728 0.71011 1.90672 1.19788 1.85387 1.46734 1.22148 1.08516 0.85747 1.00903 0.80917 1.23559 0.93359 0.99424 0.99282 1.21923 0.99843 1.00014 0.90889 1.20938 1.03901 0.97110 0.90756 1.30057 1.19602 1.15653 1.06820 1.07936 0.76379 0.77026 0.78876 1.93546 1.83499 1.62915 1.58432 1.93553 1.43823 1.74361 1.86203 1.29954 1.14710 1.10844 1.15295 1.20977 0.96463 0.93010 1.00753 0.91891 0.91437 0.91322 0.90165 0.90345 0.90961 0.90815 0.87967 0.82845 0.89401 0.90993 0.82099 0.84277 0.81330 0.82252 0.85422 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.39 13.22 21.65 0.29 -54.10 16 2 C 0.02 0.85 5.49 84.86 0.47 1.32 16 3 Si 0.99 43.75 29.55 68.60 2.03 45.78 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.54 -30.88 9.50 67.95 0.65 -30.24 16 8 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 9 S -0.19 -9.74 21.44 -56.49 -1.21 -10.95 16 10 C -0.09 -3.56 5.67 71.98 0.41 -3.15 16 11 C -0.09 -2.69 5.60 30.59 0.17 -2.52 16 12 C 0.08 2.11 5.47 71.98 0.39 2.51 16 13 O -0.35 -8.57 10.22 -51.43 -0.53 -9.09 16 14 C 0.49 10.27 5.98 71.24 0.43 10.70 16 15 O -0.54 -14.42 16.36 21.97 0.36 -14.06 16 16 C -0.15 -1.68 5.97 -11.51 -0.07 -1.75 16 17 H 0.17 0.95 8.14 -2.38 -0.02 0.93 16 18 C -0.12 -0.68 9.48 30.62 0.29 -0.39 16 19 C -0.13 -1.00 1.77 -52.17 -0.09 -1.09 16 20 C -0.09 -1.11 5.00 30.58 0.15 -0.96 16 21 C -0.59 -5.31 6.35 71.99 0.46 -4.86 16 22 S 2.41 29.12 5.27 -56.49 -0.30 28.82 16 23 O -0.99 -19.37 18.10 -127.38 -2.31 -21.67 16 24 O -0.98 -21.01 17.91 -127.38 -2.28 -23.29 16 25 C -0.58 -1.32 6.35 71.99 0.46 -0.86 16 26 C -0.07 -0.26 5.41 30.58 0.17 -0.10 16 27 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.07 2.58 8.14 -2.40 -0.02 2.56 16 29 H 0.07 2.61 8.14 -2.40 -0.02 2.59 16 30 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 33 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 34 H 0.10 0.88 7.93 -2.39 -0.02 0.86 16 35 H 0.15 -0.23 8.14 -2.38 -0.02 -0.25 16 36 H 0.09 1.30 8.10 -2.39 -0.02 1.28 16 37 H 0.07 1.13 6.95 -2.39 -0.02 1.11 16 38 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.17 -0.63 8.14 -2.39 -0.02 -0.65 16 41 H 0.16 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.13 -0.25 8.09 -2.39 -0.02 -0.27 16 43 H 0.09 0.55 8.10 -2.39 -0.02 0.53 16 Total: -1.00 -85.48 384.42 0.92 -84.55 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 1.00 Total: 5.40 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 3.87 Total: -31.39 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.29 Total: -54.10 kcal Atomic # 8 Polarization: -63.36 SS G_CDS: -4.75 Total: -68.11 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 19.38 SS G_CDS: -1.51 Total: 17.87 kcal Total: -85.48 0.92 -84.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322672228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.123 kcal (2) G-P(sol) polarization free energy of solvation -85.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds