Wall clock time and date at job start Wed Apr 1 2020 05:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38163 * 120.02892 * 2 1 4 4 C 1.38263 * 120.11978 * 180.27457 * 3 2 1 5 5 C 1.38313 * 120.17084 * 359.75051 * 4 3 2 6 6 C 1.38259 * 120.04655 * 359.97438 * 5 4 3 7 7 F 1.35107 * 120.05806 * 179.97438 * 6 5 4 8 8 C 1.38838 * 120.02653 * 179.77346 * 2 1 3 9 9 N 1.39827 * 120.08056 * 359.97438 * 8 2 1 10 10 C 1.34773 * 120.00026 * 95.43742 * 9 8 2 11 11 O 1.21378 * 119.99914 * 355.02916 * 10 9 8 12 12 C 1.49347 * 119.99995 * 175.02284 * 10 9 8 13 13 O 1.21364 * 119.99977 * 0.02562 * 12 10 9 14 14 N 1.34773 * 119.99995 * 180.02562 * 12 10 9 15 15 C 1.46496 * 120.00375 * 180.02562 * 14 12 10 16 16 H 1.08998 * 109.46945 * 325.00353 * 15 14 12 17 17 C 1.50693 * 109.47727 * 205.00216 * 15 14 12 18 18 H 1.08003 * 119.99575 * 359.97438 * 17 15 14 19 19 C 1.37871 * 120.00647 * 180.02562 * 17 15 14 20 20 N 1.31518 * 119.99523 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00562 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46945 * 269.99650 * 21 19 17 23 23 H 1.48504 * 109.46989 * 29.99312 * 21 19 17 24 24 H 1.48500 * 109.47236 * 149.99576 * 21 19 17 25 25 C 1.53008 * 109.47099 * 84.99767 * 15 14 12 26 26 F 1.39898 * 109.46855 * 180.02562 * 25 15 14 27 27 F 1.39894 * 109.46919 * 300.00529 * 25 15 14 28 28 F 1.39896 * 109.46647 * 60.00434 * 25 15 14 29 29 H 1.09000 * 109.46833 * 270.23054 * 1 2 3 30 30 H 1.09002 * 109.46927 * 30.22577 * 1 2 3 31 31 H 1.08995 * 109.47434 * 150.23117 * 1 2 3 32 32 H 1.08004 * 119.94221 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.91621 * 179.72428 * 4 3 2 34 34 H 1.07999 * 119.97732 * 180.02562 * 5 4 3 35 35 H 0.97002 * 119.99434 * 275.43395 * 9 8 2 36 36 H 0.97004 * 120.00147 * 0.02562 * 14 12 10 37 37 H 0.97002 * 119.99704 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5810 1.1984 -0.0057 5 6 4.2780 0.0037 -0.0063 6 6 3.5932 -1.1973 -0.0006 7 9 4.2738 -2.3644 -0.0016 8 6 2.2017 -1.2020 0.0048 9 7 1.5048 -2.4143 0.0101 10 6 1.2644 -3.0585 -1.1491 11 8 1.5723 -2.5440 -2.2044 12 6 0.6192 -4.4053 -1.1350 13 8 0.3110 -4.9195 -0.0797 14 7 0.3793 -5.0497 -2.2941 15 6 -0.2541 -6.3706 -2.2804 16 1 0.0826 -6.9259 -1.4049 17 6 0.1263 -7.1232 -3.5293 18 1 0.7746 -6.6633 -4.2605 19 6 -0.3542 -8.3983 -3.7392 20 7 -1.1442 -8.9581 -2.8491 21 14 0.1178 -9.3314 -5.2871 22 1 -0.8732 -9.0496 -6.3565 23 1 1.4658 -8.8979 -5.7347 24 1 0.1361 -10.7884 -5.0006 25 6 -1.7744 -6.2067 -2.2267 26 9 -2.3791 -7.4682 -2.2130 27 9 -2.1274 -5.5082 -1.0672 28 9 -2.2065 -5.4941 -3.3503 29 1 -0.3633 0.0041 1.0277 30 1 -0.3633 0.8880 -0.5174 31 1 -0.3634 -0.8920 -0.5102 32 1 1.6579 2.1312 0.0004 33 1 4.1181 2.1353 -0.0102 34 1 5.3580 0.0091 -0.0103 35 1 1.1945 -2.7915 0.8481 36 1 0.6260 -4.6389 -3.1375 37 1 -1.4819 -9.8553 -2.9966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337031077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:37 Heat of formation + Delta-G solvation = -219.887339 kcal Electronic energy + Delta-G solvation = -31229.191775 eV Core-core repulsion = 26086.108068 eV Total energy + Delta-G solvation = -5143.083707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.03720 -48.45553 -46.11005 -45.71023 -40.76717 -39.33731 -37.96956 -35.42465 -34.59504 -32.73912 -32.59277 -29.94083 -28.79231 -27.34865 -25.02140 -24.54649 -22.60601 -21.98188 -21.20908 -20.12574 -18.97392 -17.81573 -17.16421 -17.13273 -16.90044 -16.79839 -16.72705 -16.09912 -15.79655 -15.60936 -15.21733 -14.96948 -14.83281 -14.28379 -14.02008 -13.75869 -13.59104 -13.40175 -13.14493 -13.01555 -12.63559 -12.50409 -12.48163 -12.36824 -12.09908 -12.07784 -12.02157 -11.91077 -11.64910 -11.42934 -11.25292 -10.93251 -10.89765 -10.44523 -9.76860 -9.69600 -9.41404 -9.02819 -8.90664 -8.81987 -8.50218 -6.30902 -4.55460 0.75654 0.87929 1.64240 2.52311 3.17218 3.22558 3.23696 3.26914 3.47941 3.81302 3.98044 4.17005 4.42647 4.44275 4.53149 4.80760 4.85834 4.88233 4.92671 5.19210 5.26645 5.38730 5.59958 5.69424 5.73051 5.75289 5.89520 5.98372 6.07158 6.08315 6.20304 6.62004 6.71163 6.82309 7.02488 7.33352 7.55305 7.76722 8.08034 8.34453 8.52942 9.12606 10.60734 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.003064 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.412298 B = 9136.411510 C = 9882.591329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.045 4.045 3 C -0.127 4.127 4 C -0.081 4.081 5 C -0.157 4.157 6 C 0.115 3.885 7 F -0.129 7.129 8 C 0.098 3.902 9 N -0.660 5.660 10 C 0.516 3.484 11 O -0.503 6.503 12 C 0.502 3.498 13 O -0.514 6.514 14 N -0.675 5.675 15 C 0.243 3.757 16 H 0.091 0.909 17 C -0.554 4.554 18 H 0.081 0.919 19 C 0.066 3.934 20 N -0.839 5.839 21 Si 0.918 3.082 22 H -0.275 1.275 23 H -0.269 1.269 24 H -0.282 1.282 25 C 0.417 3.583 26 F -0.133 7.133 27 F -0.218 7.218 28 F -0.206 7.206 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.423 0.577 36 H 0.412 0.588 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.959 17.582 6.421 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.046 4.046 3 C -0.146 4.146 4 C -0.099 4.099 5 C -0.176 4.176 6 C 0.094 3.906 7 F -0.108 7.108 8 C 0.006 3.994 9 N -0.314 5.314 10 C 0.299 3.701 11 O -0.376 6.376 12 C 0.281 3.719 13 O -0.390 6.390 14 N -0.326 5.326 15 C 0.138 3.862 16 H 0.109 0.891 17 C -0.591 4.591 18 H 0.099 0.901 19 C -0.143 4.143 20 N -0.472 5.472 21 Si 0.744 3.256 22 H -0.201 1.201 23 H -0.193 1.193 24 H -0.207 1.207 25 C 0.361 3.639 26 F -0.114 7.114 27 F -0.200 7.200 28 F -0.188 7.188 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.263 0.737 36 H 0.248 0.752 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.821 17.269 6.442 19.329 hybrid contribution 0.024 -0.674 -0.753 1.011 sum 5.845 16.595 5.689 18.491 Atomic orbital electron populations 1.20805 0.89870 1.03767 1.02974 1.20066 0.96971 0.91326 0.96248 1.21019 0.94154 0.97387 1.02040 1.21063 0.94088 0.97572 0.97209 1.21074 1.01066 0.90766 1.04729 1.18011 0.88993 0.82081 1.01513 1.91537 1.79542 1.46224 1.93482 1.17331 0.88644 0.86249 1.07216 1.42885 1.57110 1.20817 1.10580 1.20677 0.79065 0.86592 0.83796 1.90769 1.49535 1.67136 1.30159 1.19748 0.80877 0.85606 0.85658 1.90772 1.50918 1.67047 1.30247 1.45936 1.58501 1.19958 1.08159 1.19948 0.83351 0.79614 1.03322 0.89142 1.20881 1.33786 0.99903 1.04511 0.90091 1.25078 0.93856 0.97347 0.98023 1.70389 1.28214 1.14584 1.34022 0.86154 0.79226 0.78586 0.81600 1.20096 1.19341 1.20721 1.23075 0.95155 0.74239 0.71407 1.93420 1.85431 1.36891 1.95694 1.93063 1.94184 1.80839 1.51930 1.93008 1.91996 1.79650 1.54150 0.90255 0.90670 0.91045 0.84782 0.84633 0.84261 0.73719 0.75192 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.77 36.00 0.35 -0.75 16 2 C -0.04 -0.47 5.90 -104.43 -0.62 -1.09 16 3 C -0.13 -1.05 9.70 -39.60 -0.38 -1.43 16 4 C -0.08 -0.62 10.04 -39.54 -0.40 -1.02 16 5 C -0.16 -1.50 10.02 -39.55 -0.40 -1.89 16 6 C 0.11 1.46 7.31 -39.23 -0.29 1.18 16 7 F -0.13 -1.89 17.08 2.25 0.04 -1.85 16 8 C 0.10 1.27 5.27 -83.65 -0.44 0.83 16 9 N -0.66 -9.39 4.10 -10.24 -0.04 -9.43 16 10 C 0.52 8.98 7.53 -11.64 -0.09 8.90 16 11 O -0.50 -9.57 16.46 5.47 0.09 -9.48 16 12 C 0.50 10.01 7.42 -11.64 -0.09 9.92 16 13 O -0.51 -11.07 15.06 5.48 0.08 -10.99 16 14 N -0.67 -14.29 4.98 -55.40 -0.28 -14.57 16 15 C 0.24 5.94 2.21 -69.08 -0.15 5.79 16 16 H 0.09 2.41 7.58 -51.93 -0.39 2.02 16 17 C -0.55 -14.07 8.46 -34.45 -0.29 -14.36 16 18 H 0.08 1.97 7.74 -52.48 -0.41 1.56 16 19 C 0.07 1.70 5.20 -17.82 -0.09 1.60 16 20 N -0.84 -22.52 9.50 55.43 0.53 -22.00 16 21 Si 0.92 19.99 29.54 -169.99 -5.02 14.97 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 C 0.42 10.48 2.81 37.16 0.10 10.58 16 26 F -0.13 -3.60 12.91 2.25 0.03 -3.57 16 27 F -0.22 -5.31 15.68 2.25 0.04 -5.27 16 28 F -0.21 -5.05 16.94 2.25 0.04 -5.01 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 31 H 0.07 0.83 7.19 -51.93 -0.37 0.46 16 32 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.42 5.39 8.30 -40.82 -0.34 5.05 16 36 H 0.41 8.17 8.01 -40.82 -0.33 7.85 16 37 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 342.71 15.07 5.16 5.16 Total: -1.00 -30.27 342.71 -5.19 -35.46 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -3.08 Total: 8.32 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: -2.78 Total: 18.26 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.21 Total: -46.00 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.17 Total: -20.47 kcal Atomic # 9 Polarization: -15.84 SS G_CDS: 0.14 Total: -15.70 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.27 -5.19 -35.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337031077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.426 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds