Wall clock time and date at job start Wed Apr 1 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38165 * 120.02826 * 2 1 4 4 C 1.38255 * 120.11957 * 180.27823 * 3 2 1 5 5 C 1.38315 * 120.16845 * 359.74071 * 4 3 2 6 6 C 1.38258 * 120.05276 * 0.02562 * 5 4 3 7 7 F 1.35097 * 120.05815 * 179.97438 * 6 5 4 8 8 C 1.38838 * 120.02474 * 179.76645 * 2 1 3 9 9 N 1.39827 * 120.08309 * 0.02562 * 8 2 1 10 10 C 1.34775 * 119.99710 * 131.45459 * 9 8 2 11 11 O 1.21383 * 120.00467 * 5.52342 * 10 9 8 12 12 C 1.49344 * 119.99844 * 185.53108 * 10 9 8 13 13 O 1.21367 * 119.99779 * 359.97438 * 12 10 9 14 14 N 1.34778 * 120.00252 * 179.97438 * 12 10 9 15 15 C 1.46499 * 120.00048 * 179.97438 * 14 12 10 16 16 H 1.08995 * 109.47131 * 34.99762 * 15 14 12 17 17 C 1.50699 * 109.47090 * 154.99556 * 15 14 12 18 18 H 1.08003 * 120.00364 * 5.35463 * 17 15 14 19 19 C 1.37879 * 120.00256 * 185.34828 * 17 15 14 20 20 N 1.31512 * 119.99641 * 19.32215 * 19 17 15 21 21 Si 1.86796 * 120.00237 * 199.59735 * 19 17 15 22 22 H 1.48508 * 109.47202 * 269.72741 * 21 19 17 23 23 H 1.48497 * 109.47226 * 29.72239 * 21 19 17 24 24 H 1.48496 * 109.47352 * 149.72571 * 21 19 17 25 25 C 1.52998 * 109.47143 * 274.99766 * 15 14 12 26 26 F 1.39906 * 109.46788 * 295.75686 * 25 15 14 27 27 F 1.39899 * 109.47212 * 55.75416 * 25 15 14 28 28 F 1.39899 * 109.47146 * 175.75639 * 25 15 14 29 29 H 1.08999 * 109.47550 * 270.22913 * 1 2 3 30 30 H 1.08997 * 109.47243 * 30.23530 * 1 2 3 31 31 H 1.09010 * 109.47437 * 150.22962 * 1 2 3 32 32 H 1.08000 * 119.93387 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.91420 * 179.72336 * 4 3 2 34 34 H 1.08004 * 119.97091 * 180.02562 * 5 4 3 35 35 H 0.96996 * 119.99914 * 311.44689 * 9 8 2 36 36 H 0.96998 * 119.99926 * 359.97438 * 14 12 10 37 37 H 0.97001 * 120.00055 * 6.04909 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1984 -0.0058 5 6 4.2779 0.0037 -0.0062 6 6 3.5932 -1.1974 -0.0014 7 9 4.2739 -2.3643 -0.0023 8 6 2.2017 -1.2021 0.0049 9 7 1.5048 -2.4143 0.0093 10 6 1.8393 -3.3869 -0.8616 11 8 2.8076 -3.2511 -1.5809 12 6 1.0184 -4.6319 -0.9420 13 8 0.0504 -4.7680 -0.2226 14 7 1.3525 -5.6044 -1.8133 15 6 0.5475 -6.8259 -1.8916 16 1 -0.5007 -6.5820 -1.7192 17 6 0.7015 -7.4422 -3.2582 18 1 1.4011 -7.0208 -3.9650 19 6 -0.0505 -8.5442 -3.6063 20 7 -1.1449 -8.8317 -2.9361 21 14 0.4893 -9.6331 -5.0248 22 1 -0.1163 -9.1380 -6.2872 23 1 1.9694 -9.5993 -5.1394 24 1 0.0438 -11.0276 -4.7757 25 6 1.0218 -7.8184 -0.8282 26 9 2.3372 -8.2057 -1.1055 27 9 0.9699 -7.2122 0.4316 28 9 0.1920 -8.9447 -0.8383 29 1 -0.3634 0.0041 1.0276 30 1 -0.3633 0.8878 -0.5175 31 1 -0.3634 -0.8921 -0.5103 32 1 1.6578 2.1311 -0.0004 33 1 4.1180 2.1354 -0.0103 34 1 5.3579 0.0092 -0.0104 35 1 0.7808 -2.5552 0.6392 36 1 2.1259 -5.4956 -2.3884 37 1 -1.4710 -8.2223 -2.2555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337031078.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:40 Heat of formation + Delta-G solvation = -238.735901 kcal Electronic energy + Delta-G solvation = -31319.099560 eV Core-core repulsion = 26175.198518 eV Total energy + Delta-G solvation = -5143.901042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.86842 -48.85490 -46.42169 -46.30762 -40.84985 -39.42510 -38.11841 -35.59739 -34.81632 -32.85526 -32.64193 -29.95341 -28.66860 -27.36235 -25.00098 -24.57821 -22.75423 -21.97587 -21.43102 -20.23338 -19.06058 -17.97409 -17.47582 -17.35360 -17.13183 -16.97217 -16.78488 -16.26930 -16.22347 -15.43081 -15.36400 -14.97120 -14.46068 -14.05594 -13.95809 -13.90299 -13.62617 -13.47370 -13.40177 -13.27165 -13.02414 -12.84144 -12.68229 -12.53531 -12.47030 -12.43613 -12.09380 -12.04484 -11.62877 -11.56301 -11.38941 -11.18169 -10.85622 -10.41068 -10.23800 -9.58443 -9.48661 -8.92385 -8.73795 -8.61240 -8.54964 -6.82775 -4.61453 0.74886 0.90362 1.59526 2.38246 3.21263 3.28728 3.35467 3.40864 3.52199 3.68814 4.00666 4.08558 4.26811 4.43552 4.52394 4.65666 4.81228 4.84486 4.91132 5.15582 5.22692 5.30559 5.32016 5.45504 5.58928 5.60195 5.71993 5.82173 5.97426 6.04306 6.15155 6.38752 6.58759 6.65695 6.89383 7.12579 7.61116 7.91335 7.99796 8.28447 8.34042 9.07209 10.52241 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.019410 B = 0.002954 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.242663 B = 9477.076582 C = 9492.785448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.068 4.068 3 C -0.121 4.121 4 C -0.094 4.094 5 C -0.151 4.151 6 C 0.115 3.885 7 F -0.121 7.121 8 C 0.103 3.897 9 N -0.651 5.651 10 C 0.509 3.491 11 O -0.490 6.490 12 C 0.505 3.495 13 O -0.517 6.517 14 N -0.668 5.668 15 C 0.232 3.768 16 H 0.084 0.916 17 C -0.638 4.638 18 H 0.077 0.923 19 C 0.044 3.956 20 N -0.853 5.853 21 Si 1.071 2.929 22 H -0.283 1.283 23 H -0.281 1.281 24 H -0.278 1.278 25 C 0.415 3.585 26 F -0.192 7.192 27 F -0.208 7.208 28 F -0.172 7.172 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.424 0.576 36 H 0.415 0.585 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.327 18.495 5.947 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.112 4.112 5 C -0.170 4.170 6 C 0.093 3.907 7 F -0.099 7.099 8 C 0.008 3.992 9 N -0.301 5.301 10 C 0.291 3.709 11 O -0.362 6.362 12 C 0.284 3.716 13 O -0.393 6.393 14 N -0.319 5.319 15 C 0.127 3.873 16 H 0.102 0.898 17 C -0.673 4.673 18 H 0.095 0.905 19 C -0.169 4.169 20 N -0.482 5.482 21 Si 0.896 3.104 22 H -0.209 1.209 23 H -0.206 1.206 24 H -0.203 1.203 25 C 0.359 3.641 26 F -0.173 7.173 27 F -0.189 7.189 28 F -0.153 7.153 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.264 0.736 36 H 0.252 0.748 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.940 16.936 5.138 18.375 hybrid contribution 0.720 0.970 1.164 1.678 sum 5.660 17.906 6.302 19.809 Atomic orbital electron populations 1.20825 0.89895 1.03883 1.03050 1.19773 0.96754 0.90895 0.99611 1.20939 0.94115 0.97162 1.01745 1.21008 0.94080 0.97523 0.98618 1.21071 1.01055 0.90747 1.04126 1.17690 0.88482 0.82393 1.02134 1.91569 1.79367 1.45820 1.93187 1.17505 0.89486 0.85970 1.06248 1.43009 1.37512 1.12441 1.37132 1.20610 0.85143 0.84716 0.80400 1.90807 1.25680 1.78787 1.40883 1.19742 0.85406 0.84281 0.82171 1.90765 1.27306 1.79516 1.41689 1.45762 1.31791 1.16633 1.37716 1.19919 0.93299 0.79171 0.94940 0.89827 1.21694 1.29815 1.18848 0.96975 0.90485 1.26025 0.92570 0.96450 1.01859 1.70718 1.17725 1.38510 1.21258 0.83546 0.76121 0.76379 0.74369 1.20942 1.20648 1.20290 1.22986 0.75409 0.83609 0.82069 1.93050 1.38371 1.92216 1.93681 1.93089 1.96280 1.83394 1.46185 1.93182 1.71592 1.54139 1.96416 0.90349 0.90553 0.90906 0.84840 0.84779 0.84345 0.73646 0.74842 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.61 36.00 0.35 -0.59 16 2 C -0.07 -0.67 5.90 -104.43 -0.62 -1.29 16 3 C -0.12 -0.95 9.70 -39.60 -0.38 -1.34 16 4 C -0.09 -0.73 10.04 -39.55 -0.40 -1.13 16 5 C -0.15 -1.52 10.02 -39.55 -0.40 -1.92 16 6 C 0.11 1.55 6.62 -39.23 -0.26 1.29 16 7 F -0.12 -1.98 14.55 2.25 0.03 -1.94 16 8 C 0.10 1.31 6.02 -83.65 -0.50 0.81 16 9 N -0.65 -9.10 4.35 -10.24 -0.04 -9.14 16 10 C 0.51 8.81 7.38 -11.64 -0.09 8.72 16 11 O -0.49 -9.28 13.84 5.47 0.08 -9.21 16 12 C 0.50 9.91 7.32 -11.63 -0.09 9.82 16 13 O -0.52 -10.83 15.09 5.48 0.08 -10.75 16 14 N -0.67 -14.05 5.01 -55.40 -0.28 -14.33 16 15 C 0.23 5.61 1.93 -69.08 -0.13 5.47 16 16 H 0.08 2.16 6.56 -51.93 -0.34 1.82 16 17 C -0.64 -16.23 8.24 -34.44 -0.28 -16.51 16 18 H 0.08 1.91 7.79 -52.48 -0.41 1.50 16 19 C 0.04 1.14 4.74 -17.82 -0.08 1.05 16 20 N -0.85 -23.55 12.05 55.43 0.67 -22.88 16 21 Si 1.07 23.26 29.95 -169.99 -5.09 18.17 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 C 0.42 10.19 2.82 37.16 0.10 10.30 16 26 F -0.19 -4.63 16.89 2.25 0.04 -4.60 16 27 F -0.21 -4.93 15.57 2.25 0.04 -4.89 16 28 F -0.17 -4.49 14.18 2.25 0.03 -4.46 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.07 0.67 7.40 -51.92 -0.38 0.29 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 33 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.42 5.19 7.99 -40.82 -0.33 4.86 16 36 H 0.41 8.25 8.00 -40.82 -0.33 7.93 16 37 H 0.28 7.73 6.47 -40.82 -0.26 7.47 16 LS Contribution 337.76 15.07 5.09 5.09 Total: -1.00 -30.59 337.76 -5.09 -35.69 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -2.96 Total: 8.56 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: -2.78 Total: 14.69 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.35 Total: -46.36 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.16 Total: -19.95 kcal Atomic # 9 Polarization: -16.03 SS G_CDS: 0.14 Total: -15.89 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.09 Total: 18.17 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.59 -5.09 -35.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337031078.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.049 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds