Wall clock time and date at job start Wed Apr 1 2020 05:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38337 * 120.04909 * 2 1 4 4 F 1.35103 * 119.99035 * 0.02562 * 3 2 1 5 5 C 1.38499 * 120.02625 * 180.02562 * 3 2 1 6 6 C 1.38285 * 120.12238 * 359.97438 * 5 3 2 7 7 C 1.38083 * 120.10455 * 359.77204 * 6 5 3 8 8 C 1.38862 * 120.05063 * 180.02562 * 2 1 3 9 9 N 1.39722 * 120.06335 * 359.97438 * 8 2 1 10 10 C 1.34779 * 120.00181 * 154.69623 * 9 8 2 11 11 O 1.21381 * 119.99762 * 3.96986 * 10 9 8 12 12 C 1.49352 * 120.00465 * 183.97283 * 10 9 8 13 13 O 1.21357 * 119.99650 * 359.97438 * 12 10 9 14 14 N 1.34776 * 120.00098 * 180.02562 * 12 10 9 15 15 C 1.46503 * 119.99711 * 179.97438 * 14 12 10 16 16 H 1.09000 * 109.47206 * 34.99200 * 15 14 12 17 17 C 1.50697 * 109.46945 * 154.99585 * 15 14 12 18 18 H 1.08002 * 120.00147 * 94.96066 * 17 15 14 19 19 C 1.37875 * 120.00073 * 274.95497 * 17 15 14 20 20 N 1.31513 * 120.00421 * 174.99332 * 19 17 15 21 21 Si 1.86806 * 119.99962 * 354.99903 * 19 17 15 22 22 H 1.48495 * 109.47207 * 275.03938 * 21 19 17 23 23 H 1.48508 * 109.46960 * 35.04199 * 21 19 17 24 24 H 1.48504 * 109.46925 * 155.03950 * 21 19 17 25 25 C 1.53000 * 109.46883 * 274.99765 * 15 14 12 26 26 F 1.39904 * 109.46759 * 295.10174 * 25 15 14 27 27 F 1.39899 * 109.47475 * 55.10380 * 25 15 14 28 28 F 1.39897 * 109.46900 * 175.10948 * 25 15 14 29 29 H 1.09007 * 109.46927 * 269.97872 * 1 2 3 30 30 H 1.08995 * 109.47328 * 29.97382 * 1 2 3 31 31 H 1.08999 * 109.47477 * 149.97985 * 1 2 3 32 32 H 1.08001 * 119.94061 * 180.02562 * 5 3 2 33 33 H 1.08006 * 119.94720 * 180.02562 * 6 5 3 34 34 H 1.07997 * 120.01587 * 180.27154 * 7 6 5 35 35 H 0.97001 * 120.00124 * 334.69908 * 9 8 2 36 36 H 0.96992 * 120.00057 * 359.97438 * 14 12 10 37 37 H 0.96999 * 120.00596 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1974 0.0000 4 9 1.5250 2.3679 0.0005 5 6 3.5847 1.1969 -0.0005 6 6 4.2782 0.0005 -0.0005 7 6 3.5921 -1.1978 0.0047 8 6 2.2024 -1.2020 -0.0005 9 7 1.5062 -2.4134 -0.0005 10 6 2.0851 -3.5234 -0.4999 11 8 3.2362 -3.4874 -0.8833 12 6 1.3103 -4.7976 -0.5816 13 8 0.1595 -4.8336 -0.1979 14 7 1.8894 -5.9076 -1.0805 15 6 1.1295 -7.1576 -1.1600 16 1 0.0867 -6.9351 -1.3865 17 6 1.7054 -8.0272 -2.2478 18 1 2.4340 -8.7860 -2.0035 19 6 1.3020 -7.8541 -3.5548 20 7 1.8751 -8.5439 -4.5167 21 14 -0.0585 -6.6396 -3.9594 22 1 -1.3779 -7.2992 -3.7883 23 1 0.0332 -5.4716 -3.0468 24 1 0.0879 -6.1825 -5.3647 25 6 1.2148 -7.8924 0.1793 26 9 2.5389 -8.2763 0.4169 27 9 0.7839 -7.0442 1.2049 28 9 0.3997 -9.0287 0.1404 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5141 32 1 4.1241 2.1325 -0.0001 33 1 5.3583 0.0034 -0.0005 34 1 4.1351 -2.1313 0.0092 35 1 0.6062 -2.4556 0.3588 36 1 2.8092 -5.8789 -1.3868 37 1 1.5916 -8.4219 -5.4363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338386768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:39 Heat of formation + Delta-G solvation = -256.919120 kcal Electronic energy + Delta-G solvation = -30924.875978 eV Core-core repulsion = 25780.186452 eV Total energy + Delta-G solvation = -5144.689526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.93765 -49.95465 -48.44727 -48.41679 -42.33154 -40.60327 -39.26123 -37.05908 -36.05434 -34.55341 -33.56031 -31.42396 -30.74658 -28.09248 -27.00537 -26.36342 -24.00675 -22.93897 -22.57962 -21.56750 -20.57552 -19.63337 -19.40819 -19.07897 -18.61594 -18.49349 -17.83082 -17.40377 -17.16925 -16.96493 -16.68751 -16.49615 -16.35670 -15.82693 -15.39726 -15.33408 -15.17315 -14.93435 -14.84344 -14.61320 -14.58277 -14.54205 -14.49492 -14.40820 -14.17884 -13.82770 -13.71781 -13.15184 -13.08286 -12.98586 -12.65373 -12.44704 -12.29398 -12.09416 -11.90165 -11.70333 -11.07050 -10.76277 -10.41367 -9.69079 -9.32738 -8.59251 -6.79757 -0.26272 0.10669 0.43234 1.00474 1.28883 1.32282 1.38381 1.80858 2.07228 2.14147 2.28672 2.55110 2.88225 3.05466 3.23114 3.25418 3.30355 3.58891 3.65269 3.77377 3.97225 4.20803 4.27579 4.32411 4.57205 4.62183 4.81253 4.83289 4.95226 5.08875 5.09596 5.11206 5.21091 5.35647 5.74416 5.85719 5.86046 6.26166 6.40566 6.53274 6.78867 6.93424 8.52554 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.014875 B = 0.003206 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.838083 B = 8731.718165 C = 9252.307379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.150 4.150 3 C 0.102 3.898 4 F -0.138 7.138 5 C -0.159 4.159 6 C -0.072 4.072 7 C -0.154 4.154 8 C 0.153 3.847 9 N -0.630 5.630 10 C 0.514 3.486 11 O -0.504 6.504 12 C 0.497 3.503 13 O -0.534 6.534 14 N -0.680 5.680 15 C 0.208 3.792 16 H 0.091 0.909 17 C -0.542 4.542 18 H 0.070 0.930 19 C 0.064 3.936 20 N -0.892 5.892 21 Si 0.921 3.079 22 H -0.258 1.258 23 H -0.255 1.255 24 H -0.274 1.274 25 C 0.446 3.554 26 F -0.185 7.185 27 F -0.189 7.189 28 F -0.182 7.182 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.148 0.852 35 H 0.431 0.569 36 H 0.418 0.582 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.243 17.811 8.662 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.153 4.153 3 C 0.083 3.917 4 F -0.116 7.116 5 C -0.178 4.178 6 C -0.090 4.090 7 C -0.174 4.174 8 C 0.058 3.942 9 N -0.276 5.276 10 C 0.297 3.703 11 O -0.379 6.379 12 C 0.278 3.722 13 O -0.411 6.411 14 N -0.334 5.334 15 C 0.105 3.895 16 H 0.108 0.892 17 C -0.579 4.579 18 H 0.088 0.912 19 C -0.144 4.144 20 N -0.526 5.526 21 Si 0.744 3.256 22 H -0.182 1.182 23 H -0.178 1.178 24 H -0.199 1.199 25 C 0.391 3.609 26 F -0.167 7.167 27 F -0.170 7.170 28 F -0.163 7.163 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.180 0.820 33 H 0.182 0.818 34 H 0.165 0.835 35 H 0.271 0.729 36 H 0.256 0.744 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.196 17.686 8.464 19.608 hybrid contribution -0.609 0.070 -0.218 0.651 sum -0.413 17.756 8.246 19.581 Atomic orbital electron populations 1.20769 0.88650 1.04045 1.04111 1.19709 0.98078 0.90405 1.07125 1.17324 0.90469 0.80203 1.03730 1.91482 1.80634 1.45553 1.93971 1.21464 0.91602 1.01053 1.03674 1.21224 1.01744 0.89917 0.96101 1.21844 0.92367 1.01295 1.01936 1.17504 0.91691 0.83782 1.01249 1.43054 1.20220 1.06028 1.58341 1.20279 0.86929 0.85014 0.78116 1.90689 1.16813 1.84483 1.45875 1.20347 0.87308 0.85379 0.79207 1.90725 1.17295 1.85399 1.47700 1.47294 1.18252 1.08238 1.59614 1.19949 0.97204 0.83203 0.89170 0.89157 1.20720 1.27731 1.18612 0.90862 0.91232 1.25589 0.97141 0.96119 0.95532 1.69923 1.40703 1.40397 1.01543 0.86110 0.80429 0.80376 0.78691 1.18238 1.17836 1.19878 1.21224 0.73270 0.78184 0.88260 1.93108 1.36323 1.91831 1.95404 1.93147 1.89808 1.70778 1.63291 1.93116 1.73256 1.53187 1.96749 0.89006 0.90027 0.91035 0.82034 0.81783 0.83451 0.72884 0.74378 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 9.27 71.24 0.66 -1.35 16 2 C -0.15 -3.12 5.90 -19.69 -0.12 -3.24 16 3 C 0.10 2.02 7.24 22.36 0.16 2.18 16 4 F -0.14 -2.74 16.48 44.97 0.74 -2.00 16 5 C -0.16 -2.60 10.02 22.34 0.22 -2.38 16 6 C -0.07 -1.24 10.04 22.24 0.22 -1.01 16 7 C -0.15 -3.59 8.79 22.41 0.20 -3.39 16 8 C 0.15 3.64 6.43 38.21 0.25 3.88 16 9 N -0.63 -16.07 4.95 -304.85 -1.51 -17.58 16 10 C 0.51 16.09 7.77 87.24 0.68 16.77 16 11 O -0.50 -16.79 13.39 -3.34 -0.04 -16.83 16 12 C 0.50 17.97 7.12 87.24 0.62 18.59 16 13 O -0.53 -20.36 15.09 -3.27 -0.05 -20.40 16 14 N -0.68 -26.57 4.88 -447.53 -2.18 -28.76 16 15 C 0.21 9.00 1.44 44.24 0.06 9.06 16 16 H 0.09 3.98 5.35 -2.39 -0.01 3.97 16 17 C -0.54 -26.87 8.69 25.60 0.22 -26.65 16 18 H 0.07 3.81 7.66 -2.91 -0.02 3.79 16 19 C 0.06 3.22 5.47 84.65 0.46 3.68 16 20 N -0.89 -48.14 13.96 21.45 0.30 -47.84 16 21 Si 0.92 39.20 26.91 68.60 1.85 41.05 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.25 -10.59 6.74 99.48 0.67 -9.92 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 C 0.45 18.48 2.83 71.98 0.20 18.69 16 26 F -0.19 -7.66 16.62 44.97 0.75 -6.91 16 27 F -0.19 -7.43 15.55 44.97 0.70 -6.73 16 28 F -0.18 -7.59 17.14 44.97 0.77 -6.82 16 29 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.08 1.29 7.64 -2.39 -0.02 1.27 16 31 H 0.07 1.22 7.00 -2.39 -0.02 1.20 16 32 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.15 3.86 5.52 -2.91 -0.02 3.85 16 35 H 0.43 9.60 6.89 -92.71 -0.64 8.96 16 36 H 0.42 15.83 8.06 -92.71 -0.75 15.08 16 37 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -57.19 337.63 4.94 -52.25 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -0.22 Total: 25.73 kcal Atomic # 6 Polarization: 30.98 SS G_CDS: 3.85 Total: 34.83 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -3.39 Total: -94.17 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.09 Total: -37.23 kcal Atomic # 9 Polarization: -25.41 SS G_CDS: 2.96 Total: -22.46 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 1.85 Total: 41.05 kcal Total: -57.19 4.94 -52.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338386768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.669 kcal (2) G-P(sol) polarization free energy of solvation -57.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds