Wall clock time and date at job start Wed Apr 1 2020 04:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86790 * 120.00260 * 2 1 4 4 H 1.48507 * 109.47096 * 269.99931 * 3 2 1 5 5 H 1.48502 * 109.47474 * 29.99762 * 3 2 1 6 6 H 1.48502 * 109.47428 * 150.00111 * 3 2 1 7 7 C 1.38798 * 119.99220 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99207 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00571 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99842 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46533 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46421 * 179.97438 * 11 10 9 13 13 O 1.45205 * 109.46790 * 180.02562 * 12 11 10 14 14 C 1.34227 * 116.99975 * 180.02562 * 13 12 11 15 15 O 1.20830 * 120.00245 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00028 * 179.97438 * 14 13 12 17 17 H 1.09000 * 108.79314 * 61.56504 * 16 14 13 18 18 C 1.53766 * 108.58828 * 302.97220 * 16 14 13 19 19 C 1.54646 * 108.63596 * 175.95574 * 18 16 14 20 20 H 1.09006 * 113.98871 * 196.47577 * 19 18 16 21 21 C 1.54877 * 105.92156 * 322.81586 * 19 18 16 22 22 C 1.52486 * 111.47734 * 81.45648 * 21 19 18 23 23 C 1.54881 * 111.47341 * 359.97438 * 22 21 19 24 24 H 1.08999 * 114.14333 * 152.30712 * 23 22 21 25 25 C 1.52478 * 108.82626 * 179.97438 * 16 14 13 26 26 S 1.84218 * 102.20032 * 28.54690 * 23 22 21 27 27 O 1.42092 * 110.10166 * 207.60920 * 26 23 22 28 28 O 1.42105 * 110.09705 * 72.45063 * 26 23 22 29 29 H 0.97002 * 119.99944 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47228 * 60.00326 * 10 9 7 31 31 H 1.08994 * 109.46979 * 299.99839 * 10 9 7 32 32 H 1.08993 * 109.47118 * 60.00233 * 11 10 9 33 33 H 1.08994 * 109.46845 * 299.99400 * 11 10 9 34 34 H 1.08998 * 109.47585 * 60.00447 * 12 11 10 35 35 H 1.08996 * 109.47694 * 299.99955 * 12 11 10 36 36 H 1.09004 * 109.50612 * 56.41125 * 18 16 14 37 37 H 1.09006 * 110.16469 * 295.90022 * 18 16 14 38 38 H 1.09006 * 109.08470 * 201.98703 * 21 19 18 39 39 H 1.08993 * 109.08587 * 320.92250 * 21 19 18 40 40 H 1.08999 * 109.08692 * 120.52326 * 22 21 19 41 41 H 1.09001 * 109.08797 * 239.57674 * 22 21 19 42 42 H 1.09004 * 109.50095 * 63.85726 * 25 16 14 43 43 H 1.09002 * 109.49927 * 303.75577 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1291 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9789 -5.3243 0.0017 12 6 3.1510 -6.3078 0.0024 13 8 2.6417 -7.6676 0.0014 14 6 3.5480 -8.6577 0.0024 15 8 4.7278 -8.3969 0.0045 16 6 3.0941 -10.0948 0.0020 17 1 2.5207 -10.2817 -0.9060 18 6 2.1888 -10.3232 1.2238 19 6 1.6401 -11.7680 1.1692 20 1 0.7810 -11.9406 1.8175 21 6 1.3744 -12.0652 -0.3274 22 6 2.6536 -12.4705 -1.0518 23 6 3.8707 -12.4741 -0.0940 24 1 4.6605 -13.1690 -0.3793 25 6 4.3220 -10.9987 0.0027 26 16 3.0869 -12.8495 1.5303 27 8 3.8601 -12.2948 2.5855 28 8 2.6799 -14.2104 1.5732 29 1 -0.4850 0.8401 -0.0004 30 1 3.1235 -3.7311 0.8925 31 1 3.1249 -3.7318 -0.8874 32 1 1.3713 -5.4844 -0.8889 33 1 1.3695 -5.4842 0.8911 34 1 3.7590 -6.1479 0.8928 35 1 3.7602 -6.1477 -0.8871 36 1 1.3584 -9.6175 1.1985 37 1 2.7570 -10.1842 2.1437 38 1 0.6483 -12.8743 -0.4066 39 1 0.9642 -11.1732 -0.8006 40 1 2.5255 -13.4691 -1.4696 41 1 2.8424 -11.7668 -1.8625 42 1 4.8829 -10.8499 0.9254 43 1 4.9540 -10.7545 -0.8512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350049607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:29 Heat of formation + Delta-G solvation = -162.781810 kcal Electronic energy + Delta-G solvation = -26068.251589 eV Core-core repulsion = 22138.865281 eV Total energy + Delta-G solvation = -3929.386309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.094 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.27809 -39.45378 -37.64460 -36.84296 -36.42981 -33.65689 -32.75000 -32.50276 -32.44526 -27.73001 -26.37204 -25.47944 -25.10758 -22.61346 -21.43371 -21.37962 -20.36720 -19.07270 -18.30218 -18.01784 -17.46983 -17.15185 -16.62143 -16.11832 -16.08984 -15.27112 -14.92355 -14.84823 -14.54446 -14.32515 -14.26010 -13.88815 -13.74465 -13.35520 -13.07276 -12.92250 -12.75101 -12.70756 -12.55210 -12.49071 -12.26479 -12.14913 -11.65377 -11.43951 -11.36462 -11.20544 -11.15249 -11.04768 -10.95468 -10.92907 -10.73207 -10.57114 -10.36848 -10.32797 -9.67551 -9.11075 -8.40513 -6.60789 -6.28369 -3.99710 -0.44715 1.90219 1.93232 2.33254 3.07010 3.17840 3.19189 3.25900 3.28433 3.49320 3.65281 3.74693 3.97282 4.11264 4.14111 4.16608 4.23052 4.30725 4.34257 4.54220 4.79007 4.86252 5.02602 5.03761 5.08446 5.10589 5.14213 5.19569 5.28029 5.30826 5.33638 5.37388 5.41767 5.51968 5.59579 5.70904 5.83134 6.08930 6.34081 6.38469 6.60551 7.53286 7.55707 8.31314 9.18154 10.79772 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.031895 B = 0.001752 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.662163 B =15977.748634 C =16181.702965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.074 0.926 9 S -0.124 6.124 10 C -0.115 4.115 11 C -0.097 4.097 12 C 0.071 3.929 13 O -0.353 6.353 14 C 0.465 3.535 15 O -0.503 6.503 16 C -0.102 4.102 17 H 0.130 0.870 18 C -0.111 4.111 19 C -0.526 4.526 20 H 0.158 0.842 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.527 4.527 24 H 0.157 0.843 25 C -0.103 4.103 26 S 2.361 3.639 27 O -0.923 6.923 28 O -0.931 6.931 29 H 0.268 0.732 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 -28.581 -1.794 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.667 4.667 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.264 4.264 11 C -0.136 4.136 12 C -0.003 4.003 13 O -0.269 6.269 14 C 0.307 3.693 15 O -0.391 6.391 16 C -0.120 4.120 17 H 0.148 0.852 18 C -0.149 4.149 19 C -0.636 4.636 20 H 0.176 0.824 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.637 4.637 24 H 0.175 0.825 25 C -0.141 4.141 26 S 2.545 3.455 27 O -0.920 6.920 28 O -0.928 6.928 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.338 -29.113 -0.975 29.320 hybrid contribution 1.762 1.935 -0.770 2.728 sum 5.100 -27.178 -1.746 27.707 Atomic orbital electron populations 1.70016 1.05925 1.27445 1.47081 1.25024 0.95114 0.99156 0.94502 0.86139 0.79445 0.81399 0.78398 1.20238 1.20716 1.19648 1.22691 0.94584 0.90640 1.58746 0.90832 1.84643 1.08749 0.99277 1.96891 1.23182 1.03482 0.96326 1.03364 1.21286 0.96398 0.91594 1.04307 1.23324 0.97859 0.76413 1.02741 1.86457 1.40179 1.16994 1.83273 1.23317 0.84748 0.88416 0.72827 1.90694 1.18543 1.84954 1.44899 1.21614 0.98529 0.88761 1.03134 0.85229 1.22009 1.00569 0.94507 0.97802 1.30605 1.18151 1.09403 1.05416 0.82410 1.22014 0.98507 1.04801 0.91068 1.22020 0.90333 1.04898 0.99093 1.30608 1.07919 1.05247 1.19942 0.82536 1.21607 0.96782 0.88603 1.07127 1.10329 0.79880 0.76647 0.78694 1.93633 1.67555 1.79877 1.50966 1.93609 1.81545 1.30947 1.86740 0.92227 0.91699 0.91750 0.90360 0.90300 0.90981 0.91082 0.87105 0.88440 0.89156 0.88282 0.89234 0.88643 0.88282 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.54 13.22 55.49 0.73 -24.81 16 2 C 0.07 1.99 5.49 -17.43 -0.10 1.90 16 3 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.52 -14.59 9.50 30.94 0.29 -14.29 16 8 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 9 S -0.12 -3.14 21.44 -107.50 -2.30 -5.45 16 10 C -0.11 -2.21 5.67 37.16 0.21 -2.00 16 11 C -0.10 -1.49 5.60 -26.73 -0.15 -1.64 16 12 C 0.07 0.95 5.47 37.16 0.20 1.16 16 13 O -0.35 -4.20 9.90 -39.25 -0.39 -4.59 16 14 C 0.46 5.08 7.24 36.01 0.26 5.35 16 15 O -0.50 -6.97 15.63 -18.75 -0.29 -7.26 16 16 C -0.10 -0.69 2.09 -91.64 -0.19 -0.88 16 17 H 0.13 0.57 4.37 -51.93 -0.23 0.35 16 18 C -0.11 -0.67 4.68 -25.47 -0.12 -0.79 16 19 C -0.53 -2.34 4.77 -24.88 -0.12 -2.45 16 20 H 0.16 0.42 8.14 -51.93 -0.42 -0.01 16 21 C -0.13 -0.39 5.23 -26.00 -0.14 -0.53 16 22 C -0.12 -0.38 5.24 -26.00 -0.14 -0.52 16 23 C -0.53 -2.33 4.80 -24.90 -0.12 -2.45 16 24 H 0.16 0.40 8.14 -51.93 -0.42 -0.03 16 25 C -0.10 -0.66 3.94 -26.16 -0.10 -0.76 16 26 S 2.36 16.21 5.40 -107.50 -0.58 15.63 16 27 O -0.92 -9.61 16.13 -57.63 -0.93 -10.54 16 28 O -0.93 -9.20 18.17 -57.63 -1.05 -10.24 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 31 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 35 H 0.07 0.94 8.13 -51.93 -0.42 0.51 16 36 H 0.11 0.62 7.92 -51.93 -0.41 0.21 16 37 H 0.10 0.67 7.25 -51.93 -0.38 0.30 16 38 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.10 0.24 6.79 -51.93 -0.35 -0.11 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.10 0.21 6.77 -51.93 -0.35 -0.14 16 42 H 0.10 0.77 7.26 -51.93 -0.38 0.39 16 43 H 0.10 0.64 7.96 -51.93 -0.41 0.22 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -36.72 366.34 -10.79 -47.52 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -6.28 Total: -4.08 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -0.20 Total: -17.93 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.73 Total: -24.81 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -2.66 Total: -32.63 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 13.07 SS G_CDS: -2.89 Total: 10.18 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.72 -10.79 -47.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350049607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.267 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds