Wall clock time and date at job start Wed Apr 1 2020 04:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86805 * 119.99785 * 2 1 4 4 H 1.48497 * 109.47241 * 239.99950 * 3 2 1 5 5 H 1.48500 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46900 * 119.99954 * 3 2 1 7 7 C 1.40310 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99785 * 189.97338 * 7 2 1 9 9 C 1.40536 * 119.99742 * 9.97137 * 7 2 1 10 10 C 1.44185 * 123.71623 * 22.90948 * 9 7 2 11 11 C 1.32764 * 114.42969 * 180.29382 * 10 9 7 12 12 S 1.75477 * 111.36385 * 359.73299 * 11 10 9 13 13 C 1.39549 * 123.71060 * 202.70214 * 9 7 2 14 14 C 1.46241 * 125.22906 * 0.02562 * 13 9 7 15 15 O 1.21757 * 120.00144 * 359.71526 * 14 13 9 16 16 N 1.34782 * 119.99612 * 179.72138 * 14 13 9 17 17 C 1.46502 * 119.99629 * 179.97438 * 16 14 13 18 18 H 1.08995 * 109.46955 * 325.00140 * 17 16 14 19 19 C 1.53007 * 109.46873 * 85.00052 * 17 16 14 20 20 O 1.42903 * 109.46804 * 64.93384 * 19 17 16 21 21 C 1.52994 * 109.47079 * 204.99937 * 17 16 14 22 22 H 1.09005 * 109.47498 * 304.81138 * 21 17 16 23 23 O 1.42902 * 109.47381 * 184.81084 * 21 17 16 24 24 C 1.50704 * 109.47286 * 64.80958 * 21 17 16 25 25 C 1.38225 * 119.61541 * 124.72826 * 24 21 17 26 26 C 1.38630 * 119.15530 * 179.75553 * 25 24 21 27 27 C 1.38671 * 118.42287 * 0.50808 * 26 25 24 28 28 C 1.38185 * 119.16471 * 359.73310 * 27 26 25 29 29 N 1.31851 * 119.61466 * 304.99884 * 24 21 17 30 30 H 0.96993 * 120.00038 * 0.02562 * 1 2 3 31 31 H 1.07993 * 122.78616 * 0.02600 * 10 9 7 32 32 H 1.08004 * 124.32144 * 179.77109 * 11 10 9 33 33 H 0.97000 * 120.00130 * 359.97438 * 16 14 13 34 34 H 1.08998 * 109.47085 * 304.93820 * 19 17 16 35 35 H 1.08998 * 109.47052 * 184.93512 * 19 17 16 36 36 H 0.96698 * 113.99294 * 179.97438 * 20 19 17 37 37 H 0.96701 * 113.99446 * 305.67938 * 23 21 17 38 38 H 1.07996 * 120.42182 * 359.97438 * 25 24 21 39 39 H 1.08001 * 120.78813 * 180.21080 * 26 25 24 40 40 H 1.08004 * 120.42150 * 179.70631 * 27 26 25 41 41 H 1.07994 * 119.62090 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6965 -1.2125 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6965 1.2126 7 6 2.0080 -1.2151 -0.0005 8 1 3.0758 -1.2221 0.1614 9 6 1.3213 -2.4229 -0.2118 10 6 0.0507 -2.5135 -0.8873 11 6 -0.4354 -3.7455 -0.9797 12 16 0.6440 -4.9156 -0.2416 13 6 1.7961 -3.6670 0.2054 14 6 3.0557 -3.8954 0.9123 15 8 3.7848 -2.9566 1.1760 16 7 3.4096 -5.1453 1.2718 17 6 4.6718 -5.3742 1.9795 18 1 5.4247 -4.6756 1.6147 19 6 4.4614 -5.1597 3.4798 20 8 3.5606 -6.1496 3.9807 21 6 5.1433 -6.8082 1.7305 22 1 4.3551 -7.5048 2.0166 23 8 6.3133 -7.0670 2.5090 24 6 5.4635 -6.9850 0.2685 25 6 6.7134 -7.4404 -0.1068 26 6 6.9960 -7.6045 -1.4540 27 6 6.0101 -7.2928 -2.3780 28 6 4.7853 -6.8376 -1.9281 29 7 4.5498 -6.6984 -0.6379 30 1 -0.4850 0.8400 -0.0004 31 1 -0.4650 -1.6504 -1.2814 32 1 -1.3750 -3.9958 -1.4498 33 1 2.8286 -5.8932 1.0620 34 1 4.0424 -4.1680 3.6498 35 1 5.4175 -5.2438 3.9964 36 1 3.3811 -6.0746 4.9279 37 1 7.0271 -6.4297 2.3699 38 1 7.4592 -7.6689 0.6402 39 1 7.9628 -7.9619 -1.7765 40 1 6.1971 -7.4040 -3.4359 41 1 4.0123 -6.5924 -2.6413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362755672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:56 Heat of formation + Delta-G solvation = -72.758305 kcal Electronic energy + Delta-G solvation = -28433.164233 eV Core-core repulsion = 24404.530436 eV Total energy + Delta-G solvation = -4028.633797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.45400 -38.68806 -37.37447 -36.14762 -35.79062 -33.64148 -32.97675 -32.32912 -31.31795 -29.56771 -28.56044 -26.15654 -25.87560 -23.46400 -22.63433 -22.04403 -20.96357 -19.75311 -18.69429 -17.87527 -17.64929 -17.04254 -16.27106 -16.12015 -15.82954 -15.60549 -15.21898 -14.99038 -14.50164 -14.24579 -14.03376 -13.69521 -13.50152 -13.37923 -13.24008 -12.92159 -12.59782 -12.38116 -12.01571 -11.90676 -11.71934 -11.51451 -11.36848 -11.12646 -11.06535 -10.84587 -10.48014 -10.40172 -10.06190 -9.83987 -9.75614 -9.54492 -9.26204 -9.14259 -8.95534 -8.35327 -8.04158 -7.39506 -7.03057 -6.96671 -4.43657 1.10586 1.32467 2.25257 3.00607 3.02757 3.06266 3.24279 3.73279 3.80067 3.86552 3.88296 3.92316 4.22542 4.42985 4.47293 4.65492 4.74046 4.87867 4.98980 5.11203 5.16757 5.30833 5.41186 5.53146 5.62047 5.69480 5.76522 5.99574 6.04492 6.12234 6.16712 6.20257 6.69929 6.80067 6.91978 7.26058 7.29575 7.34677 7.47654 7.57594 7.79512 7.85193 8.11581 8.43974 8.58209 8.70236 8.90573 9.70838 9.94075 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.003750 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.086959 B = 7465.361851 C = 7833.064176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.068 3.932 3 Si 0.924 3.076 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.382 4.382 8 H 0.110 0.890 9 C 0.140 3.860 10 C -0.102 4.102 11 C -0.211 4.211 12 S -0.037 6.037 13 C -0.420 4.420 14 C 0.607 3.393 15 O -0.575 6.575 16 N -0.715 5.715 17 C 0.139 3.861 18 H 0.091 0.909 19 C 0.069 3.931 20 O -0.565 6.565 21 C 0.158 3.842 22 H 0.127 0.873 23 O -0.544 6.544 24 C 0.093 3.907 25 C -0.169 4.169 26 C -0.079 4.079 27 C -0.179 4.179 28 C 0.109 3.891 29 N -0.450 5.450 30 H 0.287 0.713 31 H 0.144 0.856 32 H 0.135 0.865 33 H 0.399 0.601 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.374 0.626 37 H 0.374 0.626 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.284 -10.418 -0.133 13.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.153 4.153 3 Si 0.747 3.253 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.413 4.413 8 H 0.127 0.873 9 C 0.128 3.872 10 C -0.135 4.135 11 C -0.345 4.345 12 S 0.219 5.781 13 C -0.539 4.539 14 C 0.404 3.596 15 O -0.460 6.460 16 N -0.368 5.368 17 C 0.031 3.969 18 H 0.109 0.891 19 C -0.011 4.011 20 O -0.370 6.370 21 C 0.097 3.903 22 H 0.144 0.856 23 O -0.347 6.347 24 C -0.045 4.045 25 C -0.189 4.189 26 C -0.105 4.105 27 C -0.199 4.199 28 C -0.048 4.048 29 N -0.160 5.160 30 H 0.098 0.902 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.234 0.766 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.220 0.780 37 H 0.221 0.779 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 8.390 -11.555 0.110 14.280 hybrid contribution 1.052 2.239 -0.364 2.501 sum 9.442 -9.316 -0.254 13.267 Atomic orbital electron populations 1.69670 1.08005 1.30217 1.32742 1.26344 0.94899 1.02407 0.91657 0.86089 0.79946 0.78634 0.80595 1.18495 1.20197 1.18393 1.19959 0.97676 0.88816 1.34825 0.87269 1.17923 0.89568 0.91777 0.87888 1.21709 0.96491 0.96052 0.99220 1.24997 1.03325 0.97249 1.08967 1.82842 1.16647 1.13471 1.65131 1.22572 1.04642 0.95350 1.31340 1.16796 0.84583 0.81105 0.77151 1.90625 1.54218 1.42027 1.59103 1.45413 1.20963 1.09491 1.60976 1.21229 0.89856 0.95128 0.90642 0.89096 1.22609 0.92353 0.91720 0.94384 1.86450 1.67419 1.54794 1.28337 1.20776 0.87970 0.97484 0.84051 0.85570 1.86646 1.25898 1.55838 1.66317 1.22026 0.90553 0.95117 0.96813 1.21862 0.98292 1.01827 0.96884 1.21515 0.99199 0.96788 0.93012 1.22171 0.95150 1.01715 1.00826 1.22865 0.95855 0.93856 0.92273 1.67503 1.33908 1.12601 1.01941 0.90219 0.83858 0.84710 0.76648 0.92580 0.93335 0.78022 0.77872 0.84481 0.85150 0.85028 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.21 10.79 55.57 0.60 -18.61 16 2 C 0.07 1.68 5.39 -17.28 -0.09 1.59 16 3 Si 0.92 18.83 29.57 -169.99 -5.03 13.80 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.38 -10.43 8.54 -37.94 -0.32 -10.75 16 8 H 0.11 3.13 6.01 -52.49 -0.32 2.82 16 9 C 0.14 3.78 5.68 -106.21 -0.60 3.18 16 10 C -0.10 -2.53 9.05 -39.12 -0.35 -2.89 16 11 C -0.21 -4.71 11.07 28.86 0.32 -4.39 16 12 S -0.04 -0.81 22.25 -107.50 -2.39 -3.20 16 13 C -0.42 -10.81 6.51 -35.88 -0.23 -11.04 16 14 C 0.61 14.99 7.73 -13.04 -0.10 14.89 16 15 O -0.58 -15.63 14.10 5.14 0.07 -15.56 16 16 N -0.72 -14.34 3.78 -55.24 -0.21 -14.55 16 17 C 0.14 2.30 2.05 -67.93 -0.14 2.16 16 18 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 19 C 0.07 1.04 6.57 37.16 0.24 1.29 16 20 O -0.57 -8.24 12.82 -35.23 -0.45 -8.69 16 21 C 0.16 2.20 2.87 -27.88 -0.08 2.12 16 22 H 0.13 1.92 7.72 -51.93 -0.40 1.52 16 23 O -0.54 -6.21 11.30 -35.23 -0.40 -6.61 16 24 C 0.09 1.33 6.17 -82.59 -0.51 0.82 16 25 C -0.17 -1.96 9.30 -39.44 -0.37 -2.33 16 26 C -0.08 -0.83 10.18 -39.28 -0.40 -1.23 16 27 C -0.18 -1.99 10.11 -39.44 -0.40 -2.39 16 28 C 0.11 1.52 11.18 -17.55 -0.20 1.32 16 29 N -0.45 -7.25 8.56 -9.47 -0.08 -7.33 16 30 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 31 H 0.14 3.54 6.36 -52.49 -0.33 3.20 16 32 H 0.14 2.56 8.06 -52.48 -0.42 2.14 16 33 H 0.40 7.96 7.28 -40.82 -0.30 7.67 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.61 7.73 -51.93 -0.40 0.21 16 36 H 0.37 3.80 9.12 45.56 0.42 4.22 16 37 H 0.37 3.02 8.56 45.56 0.39 3.41 16 38 H 0.14 1.28 6.84 -52.49 -0.36 0.92 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.16 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -32.43 362.74 -8.60 -41.03 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -2.94 Total: 21.91 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -3.24 Total: -7.65 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.31 Total: -40.49 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.78 Total: -30.86 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.39 Total: -3.20 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.43 -8.60 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362755672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.731 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds