Wall clock time and date at job start Wed Apr 1 2020 04:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86805 * 119.99785 * 2 1 4 4 H 1.48497 * 109.47241 * 239.99950 * 3 2 1 5 5 H 1.48500 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46900 * 119.99954 * 3 2 1 7 7 C 1.40310 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99785 * 189.97338 * 7 2 1 9 9 C 1.40536 * 119.99742 * 9.97137 * 7 2 1 10 10 C 1.44185 * 123.71623 * 22.90948 * 9 7 2 11 11 C 1.32764 * 114.42969 * 180.29382 * 10 9 7 12 12 S 1.75477 * 111.36385 * 359.73299 * 11 10 9 13 13 C 1.39549 * 123.71060 * 202.70214 * 9 7 2 14 14 C 1.46241 * 125.22906 * 0.02562 * 13 9 7 15 15 O 1.21757 * 120.00144 * 359.71526 * 14 13 9 16 16 N 1.34782 * 119.99612 * 179.72138 * 14 13 9 17 17 C 1.46502 * 119.99629 * 179.97438 * 16 14 13 18 18 H 1.08995 * 109.46955 * 325.00140 * 17 16 14 19 19 C 1.53007 * 109.46873 * 85.00052 * 17 16 14 20 20 O 1.42903 * 109.46804 * 64.93384 * 19 17 16 21 21 C 1.52994 * 109.47079 * 204.99937 * 17 16 14 22 22 H 1.09005 * 109.47498 * 304.81138 * 21 17 16 23 23 O 1.42902 * 109.47381 * 184.81084 * 21 17 16 24 24 C 1.50704 * 109.47286 * 64.80958 * 21 17 16 25 25 C 1.38225 * 119.61541 * 124.72826 * 24 21 17 26 26 C 1.38630 * 119.15530 * 179.75553 * 25 24 21 27 27 C 1.38671 * 118.42287 * 0.50808 * 26 25 24 28 28 C 1.38185 * 119.16471 * 359.73310 * 27 26 25 29 29 N 1.31851 * 119.61466 * 304.99884 * 24 21 17 30 30 H 0.96993 * 120.00038 * 0.02562 * 1 2 3 31 31 H 1.07993 * 122.78616 * 0.02600 * 10 9 7 32 32 H 1.08004 * 124.32144 * 179.77109 * 11 10 9 33 33 H 0.97000 * 120.00130 * 359.97438 * 16 14 13 34 34 H 1.08998 * 109.47085 * 304.93820 * 19 17 16 35 35 H 1.08998 * 109.47052 * 184.93512 * 19 17 16 36 36 H 0.96698 * 113.99294 * 179.97438 * 20 19 17 37 37 H 0.96701 * 113.99446 * 305.67938 * 23 21 17 38 38 H 1.07996 * 120.42182 * 359.97438 * 25 24 21 39 39 H 1.08001 * 120.78813 * 180.21080 * 26 25 24 40 40 H 1.08004 * 120.42150 * 179.70631 * 27 26 25 41 41 H 1.07994 * 119.62090 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6965 -1.2125 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6965 1.2126 7 6 2.0080 -1.2151 -0.0005 8 1 3.0758 -1.2221 0.1614 9 6 1.3213 -2.4229 -0.2118 10 6 0.0507 -2.5135 -0.8873 11 6 -0.4354 -3.7455 -0.9797 12 16 0.6440 -4.9156 -0.2416 13 6 1.7961 -3.6670 0.2054 14 6 3.0557 -3.8954 0.9123 15 8 3.7848 -2.9566 1.1760 16 7 3.4096 -5.1453 1.2718 17 6 4.6718 -5.3742 1.9795 18 1 5.4247 -4.6756 1.6147 19 6 4.4614 -5.1597 3.4798 20 8 3.5606 -6.1496 3.9807 21 6 5.1433 -6.8082 1.7305 22 1 4.3551 -7.5048 2.0166 23 8 6.3133 -7.0670 2.5090 24 6 5.4635 -6.9850 0.2685 25 6 6.7134 -7.4404 -0.1068 26 6 6.9960 -7.6045 -1.4540 27 6 6.0101 -7.2928 -2.3780 28 6 4.7853 -6.8376 -1.9281 29 7 4.5498 -6.6984 -0.6379 30 1 -0.4850 0.8400 -0.0004 31 1 -0.4650 -1.6504 -1.2814 32 1 -1.3750 -3.9958 -1.4498 33 1 2.8286 -5.8932 1.0620 34 1 4.0424 -4.1680 3.6498 35 1 5.4175 -5.2438 3.9964 36 1 3.3811 -6.0746 4.9279 37 1 7.0271 -6.4297 2.3699 38 1 7.4592 -7.6689 0.6402 39 1 7.9628 -7.9619 -1.7765 40 1 6.1971 -7.4040 -3.4359 41 1 4.0123 -6.5924 -2.6413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362755672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:55 Heat of formation + Delta-G solvation = -98.467307 kcal Electronic energy + Delta-G solvation = -28434.279059 eV Core-core repulsion = 24404.530436 eV Total energy + Delta-G solvation = -4029.748623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50685 -40.20416 -38.80196 -37.71654 -37.18251 -35.14326 -34.86959 -33.34578 -32.33699 -31.18238 -30.27014 -27.74349 -27.23953 -24.48661 -24.17230 -23.34275 -22.35083 -21.44494 -20.58281 -19.47540 -18.69319 -18.34733 -17.59602 -17.50725 -17.21109 -16.97125 -16.69753 -16.22609 -15.80460 -15.68304 -15.43417 -15.39556 -14.87156 -14.53811 -14.40254 -14.19558 -14.09239 -13.94575 -13.75552 -13.50737 -13.17448 -12.94393 -12.86055 -12.71905 -12.60551 -12.23901 -12.05180 -12.00644 -11.55891 -11.37842 -11.02052 -10.98042 -10.75990 -10.35112 -10.25205 -9.95854 -9.68639 -9.28484 -8.89172 -8.81668 -6.40391 0.15504 0.36042 0.42245 1.32922 1.36370 1.42256 1.45254 1.85858 2.01512 2.17704 2.47572 2.62200 2.83242 3.14355 3.33413 3.36155 3.43818 3.71094 3.93327 4.04001 4.13800 4.26212 4.28812 4.36875 4.38887 4.49539 4.64031 4.72309 4.78637 4.87506 5.01508 5.07696 5.22990 5.28433 5.32842 5.43320 5.61885 5.80297 5.83097 5.89746 6.43540 6.57702 6.63286 6.77683 6.88363 7.06201 7.13591 7.83175 8.11355 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.003750 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.086959 B = 7465.361851 C = 7833.064176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.251 1.251 6 H -0.270 1.270 7 C -0.421 4.421 8 H 0.083 0.917 9 C 0.111 3.889 10 C -0.130 4.130 11 C -0.197 4.197 12 S 0.012 5.988 13 C -0.456 4.456 14 C 0.599 3.401 15 O -0.611 6.611 16 N -0.699 5.699 17 C 0.133 3.867 18 H 0.076 0.924 19 C 0.077 3.923 20 O -0.576 6.576 21 C 0.179 3.821 22 H 0.113 0.887 23 O -0.537 6.537 24 C 0.066 3.934 25 C -0.164 4.164 26 C -0.077 4.077 27 C -0.170 4.170 28 C 0.079 3.921 29 N -0.491 5.491 30 H 0.299 0.701 31 H 0.140 0.860 32 H 0.174 0.826 33 H 0.399 0.601 34 H 0.023 0.977 35 H 0.083 0.917 36 H 0.394 0.606 37 H 0.391 0.609 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.161 0.839 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.391 -11.645 -0.439 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.184 4.184 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.174 1.174 6 H -0.195 1.195 7 C -0.452 4.452 8 H 0.101 0.899 9 C 0.100 3.900 10 C -0.162 4.162 11 C -0.332 4.332 12 S 0.268 5.732 13 C -0.575 4.575 14 C 0.395 3.605 15 O -0.498 6.498 16 N -0.350 5.350 17 C 0.027 3.973 18 H 0.094 0.906 19 C -0.002 4.002 20 O -0.384 6.384 21 C 0.118 3.882 22 H 0.131 0.869 23 O -0.342 6.342 24 C -0.072 4.072 25 C -0.183 4.183 26 C -0.102 4.102 27 C -0.190 4.190 28 C -0.078 4.078 29 N -0.202 5.202 30 H 0.111 0.889 31 H 0.158 0.842 32 H 0.191 0.809 33 H 0.234 0.766 34 H 0.041 0.959 35 H 0.101 0.899 36 H 0.243 0.757 37 H 0.241 0.759 38 H 0.180 0.820 39 H 0.186 0.814 40 H 0.179 0.821 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.492 -12.837 -0.174 15.966 hybrid contribution 0.739 2.453 -0.253 2.574 sum 10.231 -10.384 -0.426 14.584 Atomic orbital electron populations 1.69655 1.08768 1.31774 1.31986 1.27028 0.95772 1.04756 0.90800 0.85157 0.78920 0.75110 0.79978 1.18207 1.17418 1.19461 1.19938 0.96816 0.90694 1.37718 0.89937 1.18366 0.90902 0.92374 0.88384 1.21608 0.96499 0.97086 1.01051 1.25466 1.04153 0.96391 1.07149 1.82518 1.14921 1.11586 1.64129 1.23057 1.06054 0.96708 1.31636 1.16909 0.84343 0.82055 0.77148 1.90585 1.55233 1.43414 1.60541 1.45197 1.21994 1.07763 1.60076 1.21456 0.87822 0.96920 0.91118 0.90618 1.22425 0.93807 0.90155 0.93796 1.86404 1.67431 1.54223 1.30323 1.20330 0.88541 0.94684 0.84658 0.86947 1.86621 1.25567 1.56304 1.65730 1.22116 0.91753 0.96868 0.96450 1.22159 0.97484 1.00394 0.98272 1.21993 1.00437 0.95520 0.92290 1.22482 0.93981 0.99867 1.02626 1.23045 0.97499 0.95458 0.91820 1.67357 1.35605 1.14042 1.03160 0.88936 0.84215 0.80884 0.76588 0.95909 0.89899 0.75720 0.75902 0.81982 0.81369 0.82103 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.73 10.79 21.89 0.24 -39.49 16 2 C 0.04 1.82 5.39 85.37 0.46 2.28 16 3 Si 0.99 39.29 29.57 68.60 2.03 41.31 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.25 -8.82 7.11 99.48 0.71 -8.12 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.42 -24.23 8.54 23.33 0.20 -24.03 16 8 H 0.08 5.08 6.01 -2.91 -0.02 5.06 16 9 C 0.11 6.28 5.68 -20.89 -0.12 6.16 16 10 C -0.13 -6.56 9.05 22.60 0.20 -6.35 16 11 C -0.20 -8.65 11.07 66.64 0.74 -7.91 16 12 S 0.01 0.53 22.25 -56.49 -1.26 -0.72 16 13 C -0.46 -24.38 6.51 24.67 0.16 -24.22 16 14 C 0.60 31.14 7.73 86.32 0.67 31.80 16 15 O -0.61 -35.30 14.10 -4.53 -0.06 -35.36 16 16 N -0.70 -29.11 3.78 -446.88 -1.69 -30.80 16 17 C 0.13 4.50 2.05 44.99 0.09 4.60 16 18 H 0.08 2.79 7.58 -2.39 -0.02 2.77 16 19 C 0.08 2.35 6.57 71.98 0.47 2.83 16 20 O -0.58 -16.43 12.82 -148.98 -1.91 -18.34 16 21 C 0.18 4.90 2.87 29.85 0.09 4.98 16 22 H 0.11 3.40 7.72 -2.38 -0.02 3.38 16 23 O -0.54 -11.12 11.30 -148.98 -1.68 -12.80 16 24 C 0.07 1.85 6.17 42.55 0.26 2.12 16 25 C -0.16 -3.42 9.30 22.36 0.21 -3.21 16 26 C -0.08 -1.37 10.18 22.47 0.23 -1.14 16 27 C -0.17 -3.46 10.11 22.36 0.23 -3.24 16 28 C 0.08 2.20 11.18 84.67 0.95 3.15 16 29 N -0.49 -16.07 8.56 -183.88 -1.57 -17.65 16 30 H 0.30 13.17 8.29 -92.71 -0.77 12.40 16 31 H 0.14 7.05 6.36 -2.91 -0.02 7.03 16 32 H 0.17 6.12 8.06 -2.91 -0.02 6.10 16 33 H 0.40 16.43 7.28 -92.71 -0.68 15.75 16 34 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 1.95 7.73 -2.39 -0.02 1.93 16 36 H 0.39 7.57 9.12 -74.06 -0.68 6.90 16 37 H 0.39 5.32 8.56 -74.06 -0.63 4.68 16 38 H 0.16 2.46 6.84 -2.91 -0.02 2.44 16 39 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -74.71 362.74 -1.93 -76.64 By element: Atomic # 1 Polarization: 50.27 SS G_CDS: -0.86 Total: 49.41 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 4.83 Total: -12.19 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -3.02 Total: -87.94 kcal Atomic # 8 Polarization: -62.85 SS G_CDS: -3.66 Total: -66.51 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.31 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -1.26 Total: -0.72 kcal Total: -74.71 -1.93 -76.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362755672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.828 kcal (2) G-P(sol) polarization free energy of solvation -74.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds