Wall clock time and date at job start Wed Apr 1 2020 05:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38230 * 120.41600 * 2 1 4 4 N 1.31857 * 120.75996 * 179.97438 * 3 2 1 5 5 C 1.31878 * 121.73026 * 359.71064 * 4 3 2 6 6 C 1.38186 * 120.76255 * 0.58397 * 5 4 3 7 7 S 1.76200 * 120.42105 * 179.70155 * 6 5 4 8 8 O 1.42103 * 106.40268 * 156.17864 * 7 6 5 9 9 O 1.42104 * 106.39840 * 23.26154 * 7 6 5 10 10 N 1.65594 * 107.21859 * 269.72173 * 7 6 5 11 11 C 1.46506 * 119.99712 * 65.00072 * 10 7 6 12 12 C 1.50699 * 109.46983 * 165.00095 * 11 10 7 13 13 C 1.38328 * 119.96224 * 270.02054 * 12 11 10 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96952 * 89.99494 * 12 11 10 27 27 C 1.38621 * 120.42122 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47044 * 270.01469 * 1 2 3 29 29 H 1.08999 * 109.47544 * 30.01840 * 1 2 3 30 30 H 1.09003 * 109.47162 * 150.01771 * 1 2 3 31 31 H 1.08000 * 119.61948 * 359.96498 * 3 2 1 32 32 H 1.08001 * 119.62596 * 180.30780 * 5 4 3 33 33 H 0.97001 * 120.00325 * 244.99501 * 10 7 6 34 34 H 1.08996 * 109.47397 * 44.99663 * 11 10 7 35 35 H 1.08997 * 109.47015 * 284.99506 * 11 10 7 36 36 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 37 37 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 38 38 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 39 39 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.03594 * 0.04940 * 26 12 11 41 41 H 1.08000 * 120.79378 * 0.04077 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5254 1.2000 0.0005 5 6 4.2257 0.0825 0.0067 6 6 3.5949 -1.1470 0.0008 7 16 4.5394 -2.6344 0.0013 8 8 3.6994 -3.6430 0.5456 9 8 5.8094 -2.3030 0.5461 10 7 4.8027 -3.0483 -1.5804 11 6 5.6154 -2.1826 -2.4385 12 6 6.0083 -2.9355 -3.6835 13 6 7.1807 -3.6693 -3.7059 14 6 7.5449 -4.3611 -4.8465 15 6 6.7353 -4.3266 -5.9650 16 6 5.5606 -3.5863 -5.9475 17 8 4.7659 -3.5456 -7.0473 18 6 5.2315 -4.1451 -8.1616 19 1 6.1586 -4.6980 -8.1301 20 6 4.5200 -4.0517 -9.3480 21 7 4.9746 -4.6362 -10.4353 22 14 2.9167 -3.0947 -9.4026 23 1 3.1972 -1.6781 -9.7487 24 1 2.0215 -3.6870 -10.4288 25 1 2.2566 -3.1583 -8.0739 26 6 5.1975 -2.8925 -4.8002 27 6 2.2089 -1.1954 0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5136 31 1 1.6674 2.1277 -0.0006 32 1 5.3047 0.1287 0.0119 33 1 4.4190 -3.8640 -1.9386 34 1 6.5126 -1.8766 -1.9006 35 1 5.0386 -1.3000 -2.7146 36 1 7.8133 -3.7014 -2.8312 37 1 8.4611 -4.9328 -4.8611 38 1 7.0177 -4.8714 -6.8538 39 1 4.4766 -4.5712 -11.2652 40 1 4.2825 -2.3191 -4.7822 41 1 1.6889 -2.1419 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364799900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:46 Heat of formation + Delta-G solvation = -40.220038 kcal Electronic energy + Delta-G solvation = -27082.671869 eV Core-core repulsion = 23055.449037 eV Total energy + Delta-G solvation = -4027.222832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66151 -39.38791 -37.55084 -37.20222 -36.10454 -34.96928 -34.12997 -32.68448 -32.47155 -30.61292 -29.37539 -27.86023 -25.80762 -25.03289 -24.54947 -23.03287 -21.89011 -20.85066 -19.71634 -18.16645 -18.01847 -17.71810 -17.32844 -17.19910 -16.86520 -16.00962 -15.36505 -15.03661 -14.83677 -14.78355 -14.31644 -14.20594 -13.93394 -13.67725 -13.63730 -13.32484 -13.26849 -13.10910 -12.91496 -12.70634 -12.43528 -12.36689 -12.28752 -12.23144 -12.07865 -11.56964 -11.43000 -10.96000 -10.87704 -10.82337 -10.62186 -10.25517 -10.03453 -9.68288 -9.58180 -9.48583 -8.96240 -8.37977 -7.51299 -6.49408 -4.16836 -0.01376 0.27376 0.69753 1.81054 2.12696 2.79598 3.12191 3.15745 3.19452 3.32746 3.49859 3.90137 3.92836 4.16006 4.28165 4.35139 4.38232 4.48885 4.55463 4.62310 4.85534 4.98885 5.01832 5.09631 5.17193 5.20160 5.32520 5.41340 5.50794 5.55096 5.61546 5.69778 5.78665 5.98333 6.07716 6.11243 6.37963 6.63534 6.78400 6.96761 7.07638 7.17899 7.33122 7.46580 7.70137 7.94392 8.85424 9.46135 10.58141 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.002866 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.041361 B = 9766.986592 C =11393.674808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.159 4.159 3 C 0.150 3.850 4 N -0.491 5.491 5 C 0.192 3.808 6 C -0.729 4.729 7 S 2.702 3.298 8 O -0.957 6.957 9 O -0.951 6.951 10 N -1.107 6.107 11 C 0.163 3.837 12 C -0.067 4.067 13 C -0.184 4.184 14 C -0.077 4.077 15 C -0.212 4.212 16 C 0.156 3.844 17 O -0.216 6.216 18 C -0.391 4.391 19 H 0.107 0.893 20 C 0.064 3.936 21 N -0.877 5.877 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.174 4.174 27 C 0.025 3.975 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.164 0.836 32 H 0.174 0.826 33 H 0.424 0.576 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.280 0.720 40 H 0.118 0.882 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 8.551 20.549 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.162 4.162 3 C -0.007 4.007 4 N -0.199 5.199 5 C 0.034 3.966 6 C -0.816 4.816 7 S 2.789 3.211 8 O -0.947 6.947 9 O -0.941 6.941 10 N -0.868 5.868 11 C 0.038 3.962 12 C -0.069 4.069 13 C -0.204 4.204 14 C -0.095 4.095 15 C -0.231 4.231 16 C 0.104 3.896 17 O -0.121 6.121 18 C -0.467 4.467 19 H 0.124 0.876 20 C -0.139 4.139 21 N -0.515 5.515 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.207 1.207 25 H -0.184 1.184 26 C -0.194 4.194 27 C -0.001 4.001 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.181 0.819 32 H 0.191 0.809 33 H 0.260 0.740 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.152 0.848 39 H 0.090 0.910 40 H 0.136 0.864 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.092 9.167 21.071 23.537 hybrid contribution -1.542 -0.270 -0.864 1.788 sum -6.634 8.898 20.208 23.055 Atomic orbital electron populations 1.20766 0.89244 1.03845 1.03052 1.21073 0.98269 0.94184 1.02651 1.23103 0.90092 0.97895 0.89560 1.67855 1.08278 1.30801 1.13014 1.22651 1.00757 0.86057 0.87183 1.32097 1.08375 1.21640 1.19525 1.01764 0.73745 0.73054 0.72522 1.93599 1.68936 1.55825 1.76351 1.93601 1.39540 1.84655 1.76330 1.55536 1.65607 1.35102 1.30589 1.20189 0.94678 0.91523 0.89779 1.19097 0.95472 0.99187 0.93159 1.20597 0.98171 1.02942 0.98665 1.20825 0.98356 0.97681 0.92657 1.21380 0.96746 1.04704 1.00272 1.19047 0.89685 0.93238 0.87645 1.83567 1.41715 1.69079 1.17771 1.20762 1.09884 1.31526 0.84507 0.87569 1.24468 0.99178 0.96738 0.93550 1.69641 1.39416 1.42177 1.00267 0.86181 0.82096 0.79890 0.78709 1.19853 1.20719 1.18434 1.20048 1.01905 1.05285 0.92150 1.21279 0.91697 0.99509 0.87661 0.90492 0.90715 0.90703 0.81926 0.80890 0.73995 0.89337 0.91263 0.86943 0.86878 0.84821 0.90952 0.86440 0.82997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.04 36.01 0.36 -0.21 16 2 C -0.16 -1.26 5.90 -104.48 -0.62 -1.88 16 3 C 0.15 1.26 10.86 -17.54 -0.19 1.07 16 4 N -0.49 -5.18 10.36 -13.25 -0.14 -5.32 16 5 C 0.19 1.95 10.69 -17.55 -0.19 1.77 16 6 C -0.73 -7.22 5.96 -39.44 -0.24 -7.46 16 7 S 2.70 28.95 5.75 -107.50 -0.62 28.33 16 8 O -0.96 -12.38 17.36 -57.17 -0.99 -13.37 16 9 O -0.95 -12.22 16.77 -57.17 -0.96 -13.18 16 10 N -1.11 -11.54 5.99 -11.65 -0.07 -11.61 16 11 C 0.16 1.85 6.34 -5.19 -0.03 1.81 16 12 C -0.07 -1.00 5.27 -104.65 -0.55 -1.55 16 13 C -0.18 -2.79 9.70 -39.53 -0.38 -3.17 16 14 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 15 C -0.21 -4.27 9.17 -39.39 -0.36 -4.63 16 16 C 0.16 3.36 6.65 -39.11 -0.26 3.10 16 17 O -0.22 -5.44 8.59 0.05 0.00 -5.43 16 18 C -0.39 -10.63 9.95 30.89 0.31 -10.33 16 19 H 0.11 2.94 5.44 -52.49 -0.29 2.66 16 20 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 21 N -0.88 -24.74 13.96 55.48 0.77 -23.96 16 22 Si 0.91 21.00 28.62 -169.99 -4.86 16.14 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 26 C -0.17 -3.10 9.65 -39.40 -0.38 -3.48 16 27 C 0.03 0.23 9.33 -39.28 -0.37 -0.14 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 30 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 31 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.17 1.47 7.62 -52.49 -0.40 1.07 16 33 H 0.42 4.25 8.64 -34.47 -0.30 3.95 16 34 H 0.09 0.89 7.69 -51.93 -0.40 0.49 16 35 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.13 2.86 5.64 -52.49 -0.30 2.57 16 39 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 41 H 0.15 1.15 7.71 -52.49 -0.40 0.74 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -33.46 369.47 -9.28 -42.74 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.59 Total: 5.23 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -3.39 Total: -25.11 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.57 Total: -40.90 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -1.95 Total: -31.99 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.86 Total: 16.14 kcal Atomic # 16 Polarization: 28.95 SS G_CDS: -0.62 Total: 28.33 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.46 -9.28 -42.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364799900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.518 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds