Wall clock time and date at job start Wed Apr 1 2020 05:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38230 * 120.41600 * 2 1 4 4 N 1.31857 * 120.75996 * 179.97438 * 3 2 1 5 5 C 1.31878 * 121.73026 * 359.71064 * 4 3 2 6 6 C 1.38186 * 120.76255 * 0.58397 * 5 4 3 7 7 S 1.76200 * 120.42105 * 179.70155 * 6 5 4 8 8 O 1.42103 * 106.40268 * 156.17864 * 7 6 5 9 9 O 1.42104 * 106.39840 * 23.26154 * 7 6 5 10 10 N 1.65594 * 107.21859 * 269.72173 * 7 6 5 11 11 C 1.46506 * 119.99712 * 65.00072 * 10 7 6 12 12 C 1.50699 * 109.46983 * 165.00095 * 11 10 7 13 13 C 1.38328 * 119.96224 * 270.02054 * 12 11 10 14 14 C 1.38280 * 120.13484 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.07150 * 359.67534 * 14 13 12 16 16 C 1.38861 * 119.92830 * 0.59673 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.69892 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96952 * 89.99494 * 12 11 10 27 27 C 1.38621 * 120.42122 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47044 * 270.01469 * 1 2 3 29 29 H 1.08999 * 109.47544 * 30.01840 * 1 2 3 30 30 H 1.09003 * 109.47162 * 150.01771 * 1 2 3 31 31 H 1.08000 * 119.61948 * 359.96498 * 3 2 1 32 32 H 1.08001 * 119.62596 * 180.30780 * 5 4 3 33 33 H 0.97001 * 120.00325 * 244.99501 * 10 7 6 34 34 H 1.08996 * 109.47397 * 44.99663 * 11 10 7 35 35 H 1.08997 * 109.47015 * 284.99506 * 11 10 7 36 36 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 37 37 H 1.08007 * 119.96121 * 179.97438 * 14 13 12 38 38 H 1.08001 * 120.03709 * 180.32387 * 15 14 13 39 39 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.03594 * 0.04940 * 26 12 11 41 41 H 1.08000 * 120.79378 * 0.04077 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5254 1.2000 0.0005 5 6 4.2257 0.0825 0.0067 6 6 3.5949 -1.1470 0.0008 7 16 4.5394 -2.6344 0.0013 8 8 3.6994 -3.6430 0.5456 9 8 5.8094 -2.3030 0.5461 10 7 4.8027 -3.0483 -1.5804 11 6 5.6154 -2.1826 -2.4385 12 6 6.0083 -2.9355 -3.6835 13 6 7.1807 -3.6693 -3.7059 14 6 7.5449 -4.3611 -4.8465 15 6 6.7353 -4.3266 -5.9650 16 6 5.5606 -3.5863 -5.9475 17 8 4.7659 -3.5456 -7.0473 18 6 5.2315 -4.1451 -8.1616 19 1 6.1586 -4.6980 -8.1301 20 6 4.5200 -4.0517 -9.3480 21 7 4.9746 -4.6362 -10.4353 22 14 2.9167 -3.0947 -9.4026 23 1 3.1972 -1.6781 -9.7487 24 1 2.0215 -3.6870 -10.4288 25 1 2.2566 -3.1583 -8.0739 26 6 5.1975 -2.8925 -4.8002 27 6 2.2089 -1.1954 0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5136 31 1 1.6674 2.1277 -0.0006 32 1 5.3047 0.1287 0.0119 33 1 4.4190 -3.8640 -1.9386 34 1 6.5126 -1.8766 -1.9006 35 1 5.0386 -1.3000 -2.7146 36 1 7.8133 -3.7014 -2.8312 37 1 8.4611 -4.9328 -4.8611 38 1 7.0177 -4.8714 -6.8538 39 1 4.4766 -4.5712 -11.2652 40 1 4.2825 -2.3191 -4.7822 41 1 1.6889 -2.1419 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364799900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:45 Heat of formation + Delta-G solvation = -64.223583 kcal Electronic energy + Delta-G solvation = -27083.712741 eV Core-core repulsion = 23055.449037 eV Total energy + Delta-G solvation = -4028.263704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31158 -40.94375 -38.79728 -38.38647 -37.04330 -36.07506 -34.71397 -34.45071 -33.35542 -31.92612 -30.87177 -28.37013 -27.39197 -26.49303 -25.22809 -23.66420 -23.31615 -22.34465 -20.56863 -19.72505 -19.18941 -18.81977 -18.39038 -17.94369 -17.68873 -17.02611 -16.83020 -16.55598 -15.91951 -15.72288 -15.62399 -15.45452 -15.08096 -14.77539 -14.57947 -14.33159 -14.25138 -14.07840 -13.85372 -13.80570 -13.68196 -13.37182 -13.30250 -13.20432 -13.14545 -13.02154 -12.49710 -12.46970 -12.33729 -12.23887 -11.93750 -11.33660 -11.32305 -10.91808 -10.76641 -10.47407 -10.18031 -9.77858 -9.10658 -8.50127 -6.23059 -0.81564 -0.46200 0.04262 0.43107 0.67070 1.31569 1.35307 1.51295 1.94405 2.27395 2.41211 2.68460 2.78360 3.00205 3.09619 3.19205 3.33750 3.70029 3.72194 3.76037 3.88190 4.01396 4.07504 4.27480 4.36781 4.39154 4.46242 4.53461 4.64702 4.69765 4.70763 4.78810 4.85627 4.94661 5.08965 5.12829 5.21941 5.38612 5.49603 5.64360 5.71456 5.75516 5.90187 5.95864 6.21607 6.67015 6.84359 7.58230 8.61563 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.002866 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.041361 B = 9766.986592 C =11393.674808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.157 4.157 3 C 0.143 3.857 4 N -0.513 5.513 5 C 0.179 3.821 6 C -0.732 4.732 7 S 2.727 3.273 8 O -0.980 6.980 9 O -0.972 6.972 10 N -1.104 6.104 11 C 0.162 3.838 12 C -0.055 4.055 13 C -0.163 4.163 14 C -0.077 4.077 15 C -0.231 4.231 16 C 0.117 3.883 17 O -0.244 6.244 18 C -0.398 4.398 19 H 0.081 0.919 20 C 0.010 3.990 21 N -0.924 5.924 22 Si 0.970 3.030 23 H -0.266 1.266 24 H -0.269 1.269 25 H -0.261 1.261 26 C -0.170 4.170 27 C 0.009 3.991 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.191 0.809 32 H 0.184 0.816 33 H 0.427 0.573 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.284 0.716 40 H 0.130 0.870 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.547 10.291 23.394 26.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.159 4.159 3 C -0.013 4.013 4 N -0.222 5.222 5 C 0.020 3.980 6 C -0.820 4.820 7 S 2.816 3.184 8 O -0.970 6.970 9 O -0.962 6.962 10 N -0.866 5.866 11 C 0.037 3.963 12 C -0.057 4.057 13 C -0.182 4.182 14 C -0.095 4.095 15 C -0.251 4.251 16 C 0.069 3.931 17 O -0.152 6.152 18 C -0.475 4.475 19 H 0.099 0.901 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.793 3.207 23 H -0.191 1.191 24 H -0.194 1.194 25 H -0.185 1.185 26 C -0.189 4.189 27 C -0.017 4.017 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.208 0.792 32 H 0.201 0.799 33 H 0.263 0.737 34 H 0.128 0.872 35 H 0.106 0.894 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.148 0.852 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.991 10.888 23.960 26.991 hybrid contribution -1.113 -0.761 -1.399 1.944 sum -7.105 10.126 22.561 25.729 Atomic orbital electron populations 1.20857 0.87177 1.04789 1.04068 1.21399 0.99756 0.93542 1.01248 1.23642 0.89675 0.99359 0.88598 1.67883 1.09429 1.31058 1.13824 1.22879 1.01451 0.86118 0.87536 1.31861 1.08694 1.20794 1.20696 1.00842 0.72961 0.72643 0.71959 1.93568 1.69431 1.57170 1.76862 1.93569 1.40802 1.84989 1.76823 1.55381 1.65668 1.35280 1.30282 1.20302 0.96176 0.91505 0.88273 1.19464 0.94508 0.98133 0.93548 1.21122 0.97984 1.00243 0.98859 1.21141 0.98685 0.97832 0.91845 1.21396 0.97560 1.05222 1.00910 1.19611 0.90546 0.95085 0.87897 1.83508 1.42953 1.70694 1.18054 1.20695 1.09302 1.31579 0.85891 0.90125 1.25278 1.02580 0.97910 0.93109 1.69730 1.41273 1.44530 1.00993 0.85220 0.78120 0.78703 0.78694 1.19112 1.19393 1.18522 1.20328 1.02703 1.04373 0.91540 1.21585 0.91643 1.00635 0.87842 0.89322 0.89217 0.90371 0.79176 0.79918 0.73666 0.87207 0.89448 0.83231 0.84162 0.87479 0.90598 0.85209 0.81972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.04 71.24 0.72 -0.08 16 2 C -0.16 -2.07 5.90 -19.77 -0.12 -2.19 16 3 C 0.14 2.04 10.86 84.69 0.92 2.96 16 4 N -0.51 -9.75 10.36 -195.84 -2.03 -11.78 16 5 C 0.18 3.26 10.69 84.67 0.90 4.17 16 6 C -0.73 -12.93 5.96 22.36 0.13 -12.80 16 7 S 2.73 52.30 5.75 -56.49 -0.32 51.98 16 8 O -0.98 -23.68 17.36 -128.00 -2.22 -25.90 16 9 O -0.97 -22.61 16.77 -128.00 -2.15 -24.76 16 10 N -1.10 -19.73 5.99 -190.79 -1.14 -20.87 16 11 C 0.16 3.05 6.34 85.63 0.54 3.59 16 12 C -0.05 -1.46 5.27 -19.88 -0.10 -1.56 16 13 C -0.16 -4.33 9.70 22.30 0.22 -4.12 16 14 C -0.08 -2.44 10.04 22.25 0.22 -2.21 16 15 C -0.23 -9.59 9.17 22.39 0.21 -9.39 16 16 C 0.12 5.16 6.65 22.58 0.15 5.31 16 17 O -0.24 -12.74 8.59 -22.74 -0.20 -12.94 16 18 C -0.40 -22.89 9.95 67.92 0.68 -22.21 16 19 H 0.08 4.87 5.44 -2.91 -0.02 4.85 16 20 C 0.01 0.54 5.49 84.83 0.47 1.01 16 21 N -0.92 -54.53 13.96 21.61 0.30 -54.23 16 22 Si 0.97 44.30 28.62 68.60 1.96 46.26 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 26 C -0.17 -5.80 9.65 22.39 0.22 -5.58 16 27 C 0.01 0.15 9.33 22.47 0.21 0.36 16 28 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.09 0.39 8.09 -2.39 -0.02 0.37 16 30 H 0.08 0.53 8.10 -2.39 -0.02 0.51 16 31 H 0.19 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.18 2.73 7.62 -2.91 -0.02 2.71 16 33 H 0.43 7.41 8.64 -96.74 -0.84 6.57 16 34 H 0.11 1.68 7.69 -2.39 -0.02 1.67 16 35 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 36 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 38 H 0.11 4.97 5.64 -2.91 -0.02 4.95 16 39 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 41 H 0.16 2.13 7.71 -2.91 -0.02 2.10 16 Total: -1.00 -75.48 369.47 -0.19 -75.67 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.25 Total: 19.33 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 5.36 Total: -42.76 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -2.87 Total: -86.88 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -4.56 Total: -63.60 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.96 Total: 46.26 kcal Atomic # 16 Polarization: 52.30 SS G_CDS: -0.32 Total: 51.98 kcal Total: -75.48 -0.19 -75.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364799900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.449 kcal (2) G-P(sol) polarization free energy of solvation -75.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds