Wall clock time and date at job start Wed Apr 1 2020 04:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86809 * 119.99884 * 2 1 4 4 H 1.48498 * 109.47069 * 270.00034 * 3 2 1 5 5 H 1.48506 * 109.46980 * 29.99712 * 3 2 1 6 6 H 1.48493 * 109.47224 * 149.99981 * 3 2 1 7 7 C 1.39940 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00297 * 197.85483 * 7 2 1 9 9 C 1.41402 * 120.00005 * 17.85977 * 7 2 1 10 10 C 1.40716 * 120.24014 * 24.38510 * 9 7 2 11 11 C 1.37620 * 119.73696 * 180.02562 * 10 9 7 12 12 C 1.38630 * 120.25517 * 0.02562 * 11 10 9 13 13 S 1.76198 * 119.75219 * 179.97438 * 12 11 10 14 14 O 1.42095 * 106.40215 * 336.46055 * 13 12 11 15 15 O 1.42098 * 106.40628 * 203.53843 * 13 12 11 16 16 N 1.65607 * 107.21546 * 89.99881 * 13 12 11 17 17 C 1.46495 * 119.99997 * 64.72858 * 16 13 12 18 18 H 1.08999 * 109.47336 * 25.27318 * 17 16 13 19 19 C 1.53000 * 109.47109 * 265.27244 * 17 16 13 20 20 O 1.42898 * 109.47024 * 295.00186 * 19 17 16 21 21 C 1.50702 * 109.47185 * 145.27309 * 17 16 13 22 22 C 1.38677 * 120.41588 * 219.71604 * 21 17 16 23 23 C 1.38635 * 118.41636 * 179.78041 * 22 21 17 24 24 C 1.38225 * 119.15906 * 0.51756 * 23 22 21 25 25 N 1.31848 * 120.76542 * 359.72925 * 24 23 22 26 26 C 1.31885 * 121.73097 * 359.97438 * 25 24 23 27 27 C 1.38633 * 120.49724 * 0.25005 * 12 11 10 28 28 C 1.37618 * 120.25149 * 359.44986 * 27 12 11 29 29 H 0.96995 * 120.00649 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.13119 * 0.02562 * 10 9 7 31 31 H 1.08008 * 119.86931 * 180.02562 * 11 10 9 32 32 H 0.97001 * 119.99749 * 244.99534 * 16 13 12 33 33 H 1.09003 * 109.47209 * 54.99534 * 19 17 16 34 34 H 1.09002 * 109.47303 * 174.99738 * 19 17 16 35 35 H 0.96701 * 114.00158 * 180.02562 * 20 19 17 36 36 H 1.08000 * 120.78902 * 0.02662 * 22 21 17 37 37 H 1.07994 * 120.41648 * 180.21973 * 23 22 21 38 38 H 1.07997 * 119.61532 * 179.73951 * 24 23 22 39 39 H 1.07997 * 119.62214 * 180.02562 * 26 25 24 40 40 H 1.08006 * 119.87301 * 179.70295 * 27 12 11 41 41 H 1.08002 * 120.12955 * 180.27307 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4395 2.6528 0.7000 6 1 3.5397 1.4403 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2873 9 6 1.3521 -2.4072 -0.3745 10 6 0.2209 -2.3626 -1.2102 11 6 -0.4096 -3.5323 -1.5684 12 6 0.0652 -4.7509 -1.1086 13 16 -0.7528 -6.2402 -1.5748 14 8 -2.0854 -5.8781 -1.9099 15 8 -0.4361 -7.2013 -0.5772 16 7 -0.0458 -6.7699 -2.9756 17 6 1.3588 -7.1859 -2.9753 18 1 1.6419 -7.5091 -1.9736 19 6 2.2394 -6.0087 -3.3992 20 8 1.9486 -5.6600 -4.7542 21 6 1.5452 -8.3264 -3.9426 22 6 2.3795 -9.3875 -3.6246 23 6 2.5169 -10.4169 -4.5429 24 6 1.8312 -10.3466 -5.7410 25 7 1.0503 -9.3194 -6.0119 26 6 0.8911 -8.3254 -5.1598 27 6 1.1754 -4.8061 -0.2802 28 6 1.8255 -3.6497 0.0859 29 1 -0.4851 0.8399 -0.0004 30 1 -0.1509 -1.4144 -1.5692 31 1 -1.2778 -3.5006 -2.2101 32 1 -0.5607 -6.8010 -3.7971 33 1 2.0391 -5.1539 -2.7531 34 1 3.2889 -6.2907 -3.3138 35 1 2.4717 -4.9195 -5.0907 36 1 2.9064 -9.4132 -2.6822 37 1 3.1555 -11.2606 -4.3270 38 1 1.9363 -11.1423 -6.4636 39 1 0.2426 -7.5009 -5.4166 40 1 1.5338 -5.7607 0.0760 41 1 2.6929 -3.6954 0.7278 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364903563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:09 Heat of formation + Delta-G solvation = -97.901433 kcal Electronic energy + Delta-G solvation = -28249.018380 eV Core-core repulsion = 24219.294295 eV Total energy + Delta-G solvation = -4029.724085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.23454 -39.39942 -38.49770 -38.07456 -36.81640 -35.92027 -35.79513 -33.35532 -32.06621 -31.87589 -31.28252 -29.12460 -27.60003 -24.85427 -24.50301 -23.26744 -22.95518 -22.19236 -20.43813 -19.41598 -18.98591 -18.51471 -18.12605 -17.81856 -17.39251 -17.08497 -16.76859 -16.34545 -15.87123 -15.79615 -15.25787 -15.03270 -14.99850 -14.86693 -14.37545 -14.10040 -13.97510 -13.90794 -13.82798 -13.52642 -13.21264 -13.13451 -13.03640 -12.95755 -12.89869 -12.82806 -12.56385 -12.41394 -11.99321 -11.52759 -11.38643 -11.20423 -10.90817 -10.71319 -10.48783 -10.32058 -9.87096 -9.75679 -9.51124 -8.86271 -6.63341 -0.36812 0.22107 0.40104 0.49976 1.08888 1.36418 1.43577 1.51391 2.11042 2.19885 2.53490 2.88777 2.94211 3.31022 3.45892 3.54342 3.61367 3.80094 3.94870 4.12889 4.14634 4.23310 4.33253 4.34452 4.37514 4.49211 4.64331 4.81427 4.90395 4.91574 4.96297 4.99776 5.13529 5.24317 5.25448 5.37512 5.54506 5.61780 5.79375 5.82862 5.94994 6.05710 6.17402 6.51794 6.70427 6.83316 6.90846 7.08543 8.08488 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.017455 B = 0.003040 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.774080 B = 9206.958174 C = 9875.344304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.034 3.966 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.464 4.464 8 H 0.094 0.906 9 C 0.115 3.885 10 C -0.206 4.206 11 C -0.017 4.017 12 C -0.789 4.789 13 S 2.720 3.280 14 O -1.008 7.008 15 O -0.997 6.997 16 N -1.102 6.102 17 C 0.199 3.801 18 H 0.120 0.880 19 C 0.059 3.941 20 O -0.575 6.575 21 C -0.139 4.139 22 C -0.075 4.075 23 C -0.166 4.166 24 C 0.083 3.917 25 N -0.515 5.515 26 C 0.113 3.887 27 C 0.002 3.998 28 C -0.249 4.249 29 H 0.297 0.703 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.420 0.580 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.392 0.608 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.179 0.821 39 H 0.149 0.851 40 H 0.130 0.870 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.737 -11.644 -7.765 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.186 4.186 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.175 1.175 7 C -0.491 4.491 8 H 0.112 0.888 9 C 0.111 3.889 10 C -0.227 4.227 11 C -0.037 4.037 12 C -0.883 4.883 13 S 2.817 3.183 14 O -0.998 6.998 15 O -0.987 6.987 16 N -0.861 5.861 17 C 0.091 3.909 18 H 0.138 0.862 19 C -0.021 4.021 20 O -0.382 6.382 21 C -0.142 4.142 22 C -0.101 4.101 23 C -0.186 4.186 24 C -0.074 4.074 25 N -0.224 5.224 26 C -0.044 4.044 27 C -0.018 4.018 28 C -0.270 4.270 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.256 0.744 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.241 0.759 36 H 0.178 0.822 37 H 0.187 0.813 38 H 0.196 0.804 39 H 0.166 0.834 40 H 0.148 0.852 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.030 -12.413 -7.881 16.297 hybrid contribution 0.918 2.094 0.465 2.333 sum 7.948 -10.318 -7.416 14.988 Atomic orbital electron populations 1.69864 1.09481 1.31789 1.31115 1.27013 0.95477 1.05294 0.90771 0.85066 0.79172 0.74969 0.79841 1.18369 1.19334 1.17489 1.20243 0.99044 0.92042 1.37776 0.88792 1.18170 0.90467 0.93391 0.86854 1.21314 1.00908 0.96876 1.03588 1.20371 0.95903 0.92015 0.95380 1.29447 1.18204 1.15887 1.24744 1.00402 0.72206 0.73390 0.72326 1.93467 1.36871 1.85134 1.84367 1.93463 1.85395 1.61111 1.58722 1.55449 1.20769 1.82028 1.27869 1.19844 0.80173 0.91555 0.99308 0.86200 1.22749 0.98281 0.96714 0.84309 1.86378 1.67997 1.56558 1.27306 1.20755 1.00034 0.96679 0.96761 1.21889 0.95632 0.91872 1.00740 1.22457 1.01301 1.00355 0.94462 1.23323 0.91735 0.95698 0.96652 1.67722 1.18094 1.02522 1.34073 1.22503 0.96821 0.95608 0.89431 1.20430 0.91475 0.98098 0.91794 1.21229 1.05000 0.92606 1.08130 0.89177 0.87576 0.87489 0.74373 0.92703 0.90783 0.75892 0.82184 0.81337 0.80404 0.83381 0.85218 0.86801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.43 10.95 21.82 0.24 -38.19 16 2 C 0.03 1.52 5.14 85.26 0.44 1.96 16 3 Si 0.99 33.66 29.60 68.60 2.03 35.69 16 4 H -0.26 -8.57 7.11 99.48 0.71 -7.87 16 5 H -0.27 -8.84 7.11 99.48 0.71 -8.14 16 6 H -0.25 -8.20 7.11 99.48 0.71 -7.49 16 7 C -0.46 -22.13 9.05 23.46 0.21 -21.92 16 8 H 0.09 4.18 7.91 -2.91 -0.02 4.16 16 9 C 0.11 5.61 5.58 -21.29 -0.12 5.49 16 10 C -0.21 -10.22 8.70 22.73 0.20 -10.02 16 11 C -0.02 -0.75 9.49 22.22 0.21 -0.54 16 12 C -0.79 -32.35 4.93 22.46 0.11 -32.24 16 13 S 2.72 99.70 5.71 -56.49 -0.32 99.38 16 14 O -1.01 -42.98 17.26 -128.00 -2.21 -45.19 16 15 O -1.00 -39.09 16.60 -128.00 -2.12 -41.22 16 16 N -1.10 -31.48 5.38 -172.53 -0.93 -32.40 16 17 C 0.20 4.87 2.95 44.25 0.13 5.00 16 18 H 0.12 2.71 7.40 -2.39 -0.02 2.69 16 19 C 0.06 1.39 6.87 71.98 0.49 1.89 16 20 O -0.58 -13.36 12.07 -148.98 -1.80 -15.16 16 21 C -0.14 -3.16 4.84 -19.77 -0.10 -3.25 16 22 C -0.07 -1.33 9.82 22.47 0.22 -1.11 16 23 C -0.17 -2.50 10.11 22.36 0.23 -2.27 16 24 C 0.08 1.51 11.18 84.69 0.95 2.46 16 25 N -0.52 -12.82 10.36 -195.85 -2.03 -14.85 16 26 C 0.11 2.85 9.34 84.67 0.79 3.64 16 27 C 0.00 0.07 8.68 22.22 0.19 0.26 16 28 C -0.25 -10.90 9.80 22.73 0.22 -10.67 16 29 H 0.30 12.80 8.30 -92.71 -0.77 12.03 16 30 H 0.11 5.48 6.16 -2.91 -0.02 5.46 16 31 H 0.11 4.65 7.60 -2.91 -0.02 4.63 16 32 H 0.42 11.07 7.11 -96.74 -0.69 10.38 16 33 H 0.05 1.55 6.14 -2.39 -0.01 1.53 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.39 6.56 9.12 -74.06 -0.68 5.88 16 36 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.15 3.77 6.59 -2.91 -0.02 3.75 16 40 H 0.13 4.41 7.59 -2.91 -0.02 4.39 16 41 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -67.41 360.01 -3.22 -70.63 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: -0.26 Total: 42.64 kcal Atomic # 6 Polarization: -65.51 SS G_CDS: 4.18 Total: -61.33 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -2.72 Total: -85.44 kcal Atomic # 8 Polarization: -95.43 SS G_CDS: -6.13 Total: -101.56 kcal Atomic # 14 Polarization: 33.66 SS G_CDS: 2.03 Total: 35.69 kcal Atomic # 16 Polarization: 99.70 SS G_CDS: -0.32 Total: 99.38 kcal Total: -67.41 -3.22 -70.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364903563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.268 kcal (2) G-P(sol) polarization free energy of solvation -67.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds