Wall clock time and date at job start Wed Apr 1 2020 05:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38091 * 120.35954 * 2 1 4 4 N 1.31924 * 120.83305 * 179.97438 * 3 2 1 5 5 C 1.32279 * 121.65036 * 359.72208 * 4 3 2 6 6 O 1.35680 * 119.68757 * 180.28546 * 5 4 3 7 7 C 1.38878 * 120.63066 * 0.54233 * 5 4 3 8 8 C 1.50693 * 120.44333 * 179.75129 * 7 5 4 9 9 N 1.46509 * 109.46999 * 284.71791 * 8 7 5 10 10 S 1.65596 * 119.99749 * 165.00200 * 9 8 7 11 11 O 1.42099 * 106.40481 * 311.46097 * 10 9 8 12 12 O 1.42105 * 106.40085 * 178.53995 * 10 9 8 13 13 C 1.76197 * 107.22208 * 64.99975 * 10 9 8 14 14 C 1.38631 * 119.75137 * 269.73278 * 13 10 9 15 15 C 1.37625 * 120.24865 * 179.72149 * 14 13 10 16 16 C 1.40714 * 119.74505 * 0.56158 * 15 14 13 17 17 C 1.41396 * 120.24341 * 179.68299 * 16 15 14 18 18 H 1.08001 * 120.00033 * 204.40452 * 17 16 15 19 19 C 1.39945 * 119.99872 * 24.41312 * 17 16 15 20 20 N 1.30822 * 120.00260 * 17.84136 * 19 17 16 21 21 Si 1.86798 * 119.99772 * 197.84462 * 19 17 16 22 22 H 1.48503 * 109.47144 * 59.99568 * 21 19 17 23 23 H 1.48496 * 109.47221 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47181 * 299.99724 * 21 19 17 25 25 C 1.40721 * 119.50899 * 359.70882 * 16 15 14 26 26 C 1.37613 * 119.74455 * 359.97438 * 25 16 15 27 27 C 1.38418 * 119.10962 * 359.47444 * 7 5 4 28 28 H 1.08992 * 109.47482 * 270.02813 * 1 2 3 29 29 H 1.09000 * 109.46519 * 30.02683 * 1 2 3 30 30 H 1.08999 * 109.47214 * 150.02515 * 1 2 3 31 31 H 1.07999 * 119.57751 * 359.97438 * 3 2 1 32 32 H 0.96700 * 114.00337 * 270.25465 * 6 5 4 33 33 H 1.09004 * 109.47131 * 164.72065 * 8 7 5 34 34 H 1.08998 * 109.47325 * 44.71846 * 8 7 5 35 35 H 0.96994 * 119.99759 * 344.99717 * 9 8 7 36 36 H 1.08001 * 119.87548 * 359.96597 * 14 13 10 37 37 H 1.08004 * 120.12699 * 180.27473 * 15 14 13 38 38 H 0.97001 * 120.00033 * 180.02562 * 20 19 17 39 39 H 1.08000 * 120.12320 * 179.97438 * 25 16 15 40 40 H 1.08005 * 119.86875 * 180.02562 * 26 25 16 41 41 H 1.08004 * 120.75448 * 180.23655 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2050 1.1915 0.0000 4 7 3.5242 1.2025 0.0005 5 6 4.2276 0.0822 0.0065 6 8 5.5831 0.1399 0.0127 7 6 3.5918 -1.1525 0.0012 8 6 4.3974 -2.4261 0.0024 9 7 4.9611 -2.6486 -1.3315 10 16 6.1796 -3.7501 -1.5421 11 8 7.1487 -3.4728 -0.5406 12 8 6.4779 -3.7576 -2.9315 13 6 5.5170 -5.3390 -1.1669 14 6 5.5864 -5.8246 0.1297 15 6 5.0670 -7.0619 0.4354 16 6 4.4746 -7.8398 -0.5766 17 6 3.9438 -9.1153 -0.2757 18 1 3.8552 -9.8603 -1.0525 19 6 3.5330 -9.4122 1.0288 20 7 3.3068 -8.4446 1.8796 21 14 3.3077 -11.1903 1.5550 22 1 4.5950 -11.9163 1.4102 23 1 2.8715 -11.2352 2.9738 24 1 2.2780 -11.8331 0.6996 25 6 4.4149 -7.3391 -1.8903 26 6 4.9348 -6.0964 -2.1716 27 6 2.2084 -1.1976 0.0006 28 1 -0.3634 0.0005 1.0276 29 1 -0.3632 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6640 2.1263 -0.0004 32 1 5.9801 0.1584 -0.8689 33 1 3.7525 -3.2636 0.2686 34 1 5.2054 -2.3443 0.7293 35 1 4.6206 -2.1508 -2.0911 36 1 6.0461 -5.2280 0.9037 37 1 5.1182 -7.4364 1.4471 38 1 3.0224 -8.6504 2.7839 39 1 3.9628 -7.9279 -2.6748 40 1 4.8897 -5.7099 -3.1792 41 1 1.6866 -2.1432 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364972870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:33 Heat of formation + Delta-G solvation = -73.543839 kcal Electronic energy + Delta-G solvation = -27601.311985 eV Core-core repulsion = 23572.644125 eV Total energy + Delta-G solvation = -4028.667860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.79279 -37.61817 -37.33604 -36.55588 -35.52697 -35.16374 -34.08383 -33.29503 -31.53535 -30.30155 -29.50781 -26.98420 -26.05933 -25.85595 -23.35488 -21.62765 -21.40704 -21.15740 -19.01908 -18.85976 -17.65989 -17.39807 -17.12242 -16.69314 -16.16236 -15.77174 -15.55595 -14.75606 -14.42408 -14.20050 -14.10334 -13.83037 -13.53490 -13.34500 -13.32963 -13.20176 -12.83378 -12.54789 -12.44406 -12.22833 -12.09961 -11.82427 -11.73715 -11.49680 -11.39344 -11.34333 -11.30470 -11.25590 -10.93517 -10.47051 -9.92969 -9.83379 -9.72691 -9.58243 -9.53981 -9.12814 -8.83709 -8.00741 -7.74881 -7.19089 -4.84737 0.69632 0.96972 1.29099 2.21244 2.84922 2.86430 2.88249 2.92075 3.26874 3.61171 3.62800 3.78782 4.19659 4.32478 4.46325 4.54345 4.64590 4.76987 4.94132 5.11158 5.20483 5.31520 5.33820 5.38428 5.58717 5.62711 5.73694 5.95940 6.00326 6.03047 6.05395 6.09163 6.33090 6.63829 6.66406 6.86269 7.00453 7.18467 7.29803 7.38171 7.38428 7.59214 7.72658 7.73181 7.92517 8.27400 8.46861 8.60588 9.72204 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011759 B = 0.003118 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.611812 B = 8977.775649 C =10480.387736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.151 4.151 3 C 0.122 3.878 4 N -0.503 5.503 5 C 0.319 3.681 6 O -0.474 6.474 7 C -0.152 4.152 8 C 0.170 3.830 9 N -1.124 6.124 10 S 2.693 3.307 11 O -0.979 6.979 12 O -0.985 6.985 13 C -0.788 4.788 14 C -0.017 4.017 15 C -0.182 4.182 16 C 0.140 3.860 17 C -0.435 4.435 18 H 0.087 0.913 19 C 0.073 3.927 20 N -0.765 5.765 21 Si 0.917 3.083 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.261 1.261 25 C -0.239 4.239 26 C 0.003 3.997 27 C -0.047 4.047 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.158 0.842 32 H 0.400 0.600 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.408 0.592 36 H 0.104 0.896 37 H 0.123 0.877 38 H 0.290 0.710 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 11.761 -1.142 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.153 4.153 3 C -0.036 4.036 4 N -0.220 5.220 5 C 0.140 3.860 6 O -0.281 6.281 7 C -0.157 4.157 8 C 0.043 3.957 9 N -0.879 5.879 10 S 2.792 3.208 11 O -0.969 6.969 12 O -0.976 6.976 13 C -0.884 4.884 14 C -0.038 4.038 15 C -0.203 4.203 16 C 0.136 3.864 17 C -0.462 4.462 18 H 0.105 0.895 19 C -0.150 4.150 20 N -0.387 5.387 21 Si 0.740 3.260 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.186 1.186 25 C -0.260 4.260 26 C -0.018 4.018 27 C -0.073 4.073 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.176 0.824 32 H 0.258 0.742 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.240 0.760 36 H 0.122 0.878 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.423 12.730 -0.385 13.843 hybrid contribution -1.257 -1.789 -0.251 2.201 sum -6.680 10.941 -0.636 12.835 Atomic orbital electron populations 1.20704 0.89789 1.03284 1.02771 1.20954 0.97918 0.93879 1.02570 1.22421 0.88291 0.97700 0.95169 1.67212 1.08959 1.31720 1.14153 1.19067 0.84692 0.87279 0.94980 1.84779 1.13775 1.95660 1.33860 1.20991 0.94680 0.95676 1.04316 1.19954 0.97608 0.93410 0.84682 1.55841 1.58656 1.59013 1.14425 1.01275 0.73000 0.73863 0.72692 1.93503 1.57380 1.85113 1.60888 1.93498 1.83300 1.87780 1.33016 1.29126 1.34273 1.22657 1.02388 1.20278 0.94563 0.96076 0.92861 1.21343 1.03147 0.95596 1.00188 1.17850 0.85766 0.91628 0.91160 1.19929 1.33127 0.98326 0.94797 0.89456 1.26129 0.92509 1.00249 0.96069 1.69799 1.28144 1.34553 1.06250 0.86192 0.80222 0.81202 0.78336 1.18331 1.19866 1.18556 1.21050 1.10361 0.97263 0.97318 1.20157 0.91938 0.94136 0.95523 1.21511 0.92598 0.98913 0.94263 0.90758 0.91164 0.91041 0.82446 0.74196 0.90091 0.88689 0.76022 0.87812 0.85953 0.89896 0.88220 0.87831 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.03 36.01 0.36 -0.32 16 2 C -0.15 -1.40 5.90 -104.47 -0.62 -2.01 16 3 C 0.12 1.22 10.85 -17.57 -0.19 1.03 16 4 N -0.50 -6.45 10.39 -13.33 -0.14 -6.59 16 5 C 0.32 4.19 7.72 -17.12 -0.13 4.06 16 6 O -0.47 -6.21 12.90 -18.74 -0.24 -6.45 16 7 C -0.15 -1.87 5.31 -104.32 -0.55 -2.42 16 8 C 0.17 2.32 5.99 -5.19 -0.03 2.29 16 9 N -1.12 -15.73 5.99 -11.65 -0.07 -15.80 16 10 S 2.69 49.31 5.73 -107.50 -0.62 48.69 16 11 O -0.98 -20.17 16.72 -57.17 -0.96 -21.12 16 12 O -0.99 -19.94 17.26 -57.17 -0.99 -20.93 16 13 C -0.79 -16.68 5.97 -39.29 -0.23 -16.91 16 14 C -0.02 -0.39 9.49 -39.66 -0.38 -0.77 16 15 C -0.18 -4.42 8.70 -38.87 -0.34 -4.76 16 16 C 0.14 3.44 5.58 -106.82 -0.60 2.85 16 17 C -0.43 -10.39 9.05 -37.74 -0.34 -10.73 16 18 H 0.09 1.98 7.91 -52.49 -0.41 1.56 16 19 C 0.07 1.63 5.14 -17.34 -0.09 1.54 16 20 N -0.77 -17.56 10.95 55.55 0.61 -16.96 16 21 Si 0.92 16.61 29.59 -169.99 -5.03 11.58 16 22 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 23 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 24 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 25 C -0.24 -5.50 9.80 -38.87 -0.38 -5.88 16 26 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 27 C -0.05 -0.49 9.48 -39.31 -0.37 -0.87 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.40 3.73 9.06 45.56 0.41 4.14 16 33 H 0.08 1.10 8.00 -51.93 -0.42 0.68 16 34 H 0.09 1.39 7.62 -51.93 -0.40 0.99 16 35 H 0.41 4.77 8.64 -34.47 -0.30 4.47 16 36 H 0.10 2.14 7.59 -52.49 -0.40 1.75 16 37 H 0.12 3.01 6.16 -52.48 -0.32 2.68 16 38 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 39 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 40 H 0.10 2.02 7.60 -52.48 -0.40 1.62 16 41 H 0.14 1.34 8.05 -52.48 -0.42 0.92 16 LS Contribution 368.72 15.07 5.56 5.56 Total: -1.00 -31.45 368.72 -10.04 -41.49 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -3.90 Total: 13.77 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: -4.27 Total: -33.23 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.40 Total: -39.35 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -2.18 Total: -48.51 kcal Atomic # 14 Polarization: 16.61 SS G_CDS: -5.03 Total: 11.58 kcal Atomic # 16 Polarization: 49.31 SS G_CDS: -0.62 Total: 48.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.45 -10.04 -41.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364972870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.054 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds