Wall clock time and date at job start Wed Apr 1 2020 05:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46987 * 85.68820 * 3 2 1 5 5 H 1.48500 * 109.47154 * 205.68618 * 3 2 1 6 6 H 1.48498 * 109.47181 * 325.68568 * 3 2 1 7 7 C 1.38811 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99536 * 5.86606 * 7 2 1 9 9 N 1.36927 * 120.00241 * 185.86779 * 7 2 1 10 10 C 1.46500 * 120.00459 * 185.60174 * 9 7 2 11 11 C 1.52993 * 109.47447 * 188.06219 * 10 9 7 12 12 H 1.09000 * 109.87952 * 314.29275 * 11 10 9 13 13 C 1.54330 * 109.88250 * 193.27397 * 11 10 9 14 14 C 1.55160 * 102.94219 * 218.39155 * 13 11 10 15 15 C 1.54914 * 101.58114 * 35.50288 * 14 13 11 16 16 N 1.47022 * 109.88150 * 75.47108 * 11 10 9 17 17 C 1.34781 * 125.64547 * 298.30558 * 16 11 10 18 18 O 1.21637 * 119.99853 * 3.08418 * 17 16 11 19 19 C 1.47195 * 120.00185 * 183.07584 * 17 16 11 20 20 C 1.44429 * 123.45475 * 323.91307 * 19 17 16 21 21 C 1.32774 * 113.07432 * 179.80622 * 20 19 17 22 22 S 1.75504 * 110.57843 * 0.43983 * 21 20 19 23 23 C 1.36003 * 123.45952 * 144.20633 * 19 17 16 24 24 C 1.50700 * 124.59121 * 359.97438 * 23 19 17 25 25 F 1.39895 * 109.46774 * 80.90137 * 24 23 19 26 26 F 1.39901 * 109.46673 * 200.89761 * 24 23 19 27 27 F 1.39899 * 109.47420 * 320.89526 * 24 23 19 28 28 H 0.96999 * 120.00276 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99845 * 5.59834 * 9 7 2 30 30 H 1.08997 * 109.46958 * 308.06855 * 10 9 7 31 31 H 1.09005 * 109.46692 * 68.06240 * 10 9 7 32 32 H 1.08997 * 110.71817 * 336.75690 * 13 11 10 33 33 H 1.09002 * 110.71784 * 100.02911 * 13 11 10 34 34 H 1.08995 * 111.00290 * 153.57524 * 14 13 11 35 35 H 1.09001 * 111.00433 * 277.38797 * 14 13 11 36 36 H 1.08996 * 110.36364 * 81.82959 * 15 14 13 37 37 H 1.09000 * 110.36438 * 204.04309 * 15 14 13 38 38 H 1.07993 * 123.46412 * 0.02562 * 20 19 17 39 39 H 1.08004 * 124.70865 * 180.14259 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4064 2.0991 1.3961 5 1 3.5903 1.4157 -0.6068 6 1 1.4961 2.6246 -0.7893 7 6 2.0104 -1.2021 -0.0005 8 1 1.4746 -2.1349 -0.0965 9 7 3.3743 -1.2052 0.1207 10 6 4.1178 -2.4614 -0.0027 11 6 5.5830 -2.2255 0.3690 12 1 5.9471 -1.3195 -0.1154 13 6 6.4369 -3.4342 -0.0690 14 6 7.4527 -3.5820 1.0945 15 6 6.5853 -3.1890 2.3165 16 7 5.7153 -2.1037 1.8282 17 6 5.1376 -1.1559 2.5928 18 8 4.3918 -0.3383 2.0879 19 6 5.4090 -1.1103 4.0388 20 6 5.5897 -2.2898 4.8526 21 6 5.8279 -2.0102 6.1285 22 16 5.8283 -0.2747 6.3901 23 6 5.5097 0.0466 4.7467 24 6 5.3600 1.4257 4.1580 25 9 4.0013 1.7325 4.0285 26 9 5.9711 2.3610 5.0000 27 9 5.9689 1.4639 2.8990 28 1 -0.4850 0.8400 0.0004 29 1 3.8482 -0.3756 0.2883 30 1 3.6880 -3.2054 0.6679 31 1 4.0569 -2.8202 -1.0303 32 1 5.8209 -4.3289 -0.1592 33 1 6.9519 -3.2231 -1.0061 34 1 7.8032 -4.6106 1.1789 35 1 8.2900 -2.8949 0.9718 36 1 5.9852 -4.0378 2.6443 37 1 7.2164 -2.8341 3.1312 38 1 5.5400 -3.2956 4.4626 39 1 5.9932 -2.7484 6.8993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499946168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:44 Heat of formation + Delta-G solvation = -133.151398 kcal Electronic energy + Delta-G solvation = -30392.737955 eV Core-core repulsion = 25819.628577 eV Total energy + Delta-G solvation = -4573.109378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.35615 -48.91115 -48.82413 -41.48873 -39.00992 -37.92586 -36.36882 -33.61166 -32.65259 -32.15626 -30.76027 -27.85881 -26.79421 -25.26217 -24.37401 -23.28410 -22.00293 -21.63081 -20.65716 -20.17769 -19.70827 -19.65482 -18.89221 -17.75879 -17.36070 -17.07985 -16.62455 -16.35498 -15.87621 -15.73464 -15.69514 -15.42803 -15.18533 -15.05083 -15.01057 -14.93010 -14.69918 -14.53539 -14.32927 -14.08637 -13.81627 -13.68216 -13.52295 -13.37827 -13.26104 -13.03260 -12.77259 -12.31405 -12.15769 -11.96407 -11.91104 -11.77209 -11.54413 -10.99630 -10.88181 -10.41304 -9.71098 -9.53902 -9.13068 -8.05777 -5.28831 -0.74807 0.07730 0.62705 0.92956 1.23980 1.35713 1.40971 1.44097 1.92667 2.02372 2.47736 2.50286 2.99099 3.12607 3.27674 3.42047 3.55892 3.70327 3.88970 3.96229 4.08354 4.22969 4.29195 4.34899 4.54957 4.65835 4.75016 4.80782 4.84362 4.89143 5.00353 5.03696 5.12833 5.18077 5.40259 5.49140 5.73429 6.21396 6.49619 7.06157 7.23684 8.00236 8.17579 9.16866 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.009447 B = 0.006261 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.036399 B = 4471.026597 C = 6346.523380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.055 4.055 3 Si 0.948 3.052 4 H -0.296 1.296 5 H -0.272 1.272 6 H -0.295 1.295 7 C -0.212 4.212 8 H 0.056 0.944 9 N -0.749 5.749 10 C 0.145 3.855 11 C 0.127 3.873 12 H 0.052 0.948 13 C -0.114 4.114 14 C -0.118 4.118 15 C 0.086 3.914 16 N -0.604 5.604 17 C 0.558 3.442 18 O -0.537 6.537 19 C -0.085 4.085 20 C -0.126 4.126 21 C -0.175 4.175 22 S 0.301 5.699 23 C -0.329 4.329 24 C 0.533 3.467 25 F -0.183 7.183 26 F -0.169 7.169 27 F -0.178 7.178 28 H 0.254 0.746 29 H 0.374 0.626 30 H 0.022 0.978 31 H 0.035 0.965 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.186 0.814 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.673 -10.461 15.979 31.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.246 4.246 3 Si 0.779 3.221 4 H -0.223 1.223 5 H -0.198 1.198 6 H -0.222 1.222 7 C -0.343 4.343 8 H 0.074 0.926 9 N -0.400 5.400 10 C 0.018 3.982 11 C 0.023 3.977 12 H 0.071 0.929 13 C -0.152 4.152 14 C -0.156 4.156 15 C -0.035 4.035 16 N -0.339 5.339 17 C 0.344 3.656 18 O -0.413 6.413 19 C -0.108 4.108 20 C -0.154 4.154 21 C -0.311 4.311 22 S 0.570 5.430 23 C -0.449 4.449 24 C 0.477 3.523 25 F -0.164 7.164 26 F -0.151 7.151 27 F -0.159 7.159 28 H 0.063 0.937 29 H 0.213 0.787 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.203 0.797 39 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 24.307 -9.095 17.007 31.029 hybrid contribution -0.846 1.111 -1.810 2.287 sum 23.460 -7.984 15.197 29.070 Atomic orbital electron populations 1.69859 1.06481 1.25963 1.61254 1.25147 0.95740 1.00012 1.03676 0.85469 0.78095 0.81629 0.76941 1.22335 1.19780 1.22175 1.19055 0.83730 0.92967 1.38564 0.92560 1.43185 1.03068 1.06784 1.86947 1.21215 0.90850 0.88200 0.97951 1.21976 0.95048 1.00252 0.80434 0.92935 1.22646 0.96853 0.95509 1.00181 1.22806 0.96573 1.04424 0.91784 1.22899 0.92486 0.89070 0.99004 1.48414 1.49100 1.28821 1.07518 1.17833 0.80232 0.81428 0.86107 1.90823 1.35896 1.40896 1.73715 1.20426 1.02591 0.93476 0.94265 1.21487 1.03066 0.98262 0.92550 1.26350 1.04590 0.99255 1.00910 1.82869 1.63316 1.00953 0.95846 1.24671 1.19695 0.94802 1.05720 1.17494 0.73911 0.84990 0.75904 1.93262 1.33427 1.93947 1.95785 1.93187 1.82996 1.68202 1.70689 1.93200 1.83106 1.96771 1.42869 0.93735 0.78710 0.95972 0.94707 0.89022 0.88401 0.86101 0.90280 0.89246 0.88616 0.79745 0.75326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -69.68 13.97 21.65 0.30 -69.38 16 2 C -0.05 -3.69 5.50 84.86 0.47 -3.22 16 3 Si 0.95 56.77 27.48 68.60 1.88 58.65 16 4 H -0.30 -18.41 7.11 99.48 0.71 -17.70 16 5 H -0.27 -15.68 6.65 99.48 0.66 -15.02 16 6 H -0.29 -17.05 7.11 99.48 0.71 -16.34 16 7 C -0.21 -13.71 10.47 84.03 0.88 -12.83 16 8 H 0.06 3.85 8.06 -2.91 -0.02 3.83 16 9 N -0.75 -41.29 3.88 -343.47 -1.33 -42.62 16 10 C 0.14 6.04 5.61 86.38 0.48 6.53 16 11 C 0.13 3.95 3.08 45.34 0.14 4.09 16 12 H 0.05 1.87 8.11 -2.39 -0.02 1.85 16 13 C -0.11 -2.03 6.44 31.79 0.20 -1.83 16 14 C -0.12 -1.36 7.09 31.99 0.23 -1.14 16 15 C 0.09 1.36 5.27 86.86 0.46 1.82 16 16 N -0.60 -17.82 3.06 -792.14 -2.43 -20.25 16 17 C 0.56 20.94 6.60 86.60 0.57 21.51 16 18 O -0.54 -26.79 10.64 -4.15 -0.04 -26.84 16 19 C -0.09 -2.47 5.48 -19.87 -0.11 -2.58 16 20 C -0.13 -2.14 8.43 22.67 0.19 -1.95 16 21 C -0.18 -1.90 11.12 66.64 0.74 -1.16 16 22 S 0.30 5.04 22.48 -56.49 -1.27 3.77 16 23 C -0.33 -9.54 5.80 25.17 0.15 -9.39 16 24 C 0.53 19.22 2.86 71.24 0.20 19.42 16 25 F -0.18 -8.11 16.91 44.97 0.76 -7.34 16 26 F -0.17 -5.12 16.85 44.97 0.76 -4.37 16 27 F -0.18 -7.18 14.94 44.97 0.67 -6.51 16 28 H 0.25 17.23 8.31 -92.71 -0.77 16.46 16 29 H 0.37 21.32 3.17 -92.71 -0.29 21.03 16 30 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.04 1.40 8.09 -2.38 -0.02 1.38 16 32 H 0.09 1.50 7.85 -2.39 -0.02 1.48 16 33 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.09 7.41 -2.39 -0.02 1.08 16 37 H 0.10 1.17 6.72 -2.39 -0.02 1.15 16 38 H 0.19 2.15 6.19 -2.91 -0.02 2.13 16 39 H 0.23 0.23 8.06 -2.91 -0.02 0.20 16 Total: -1.00 -94.88 339.35 4.69 -90.19 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 0.78 Total: 5.41 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 4.60 Total: 19.27 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -3.46 Total: -132.24 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.04 Total: -26.84 kcal Atomic # 9 Polarization: -20.41 SS G_CDS: 2.19 Total: -18.22 kcal Atomic # 14 Polarization: 56.77 SS G_CDS: 1.88 Total: 58.65 kcal Atomic # 16 Polarization: 5.04 SS G_CDS: -1.27 Total: 3.77 kcal Total: -94.88 4.69 -90.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499946168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.957 kcal (2) G-P(sol) polarization free energy of solvation -94.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds