Wall clock time and date at job start Wed Apr 1 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46904 * 109.47182 * 246.50670 * 3 2 1 5 5 C 1.46905 * 110.99455 * 287.11057 * 4 3 2 6 6 C 1.50702 * 109.46665 * 160.53455 * 5 4 3 7 7 O 1.20830 * 120.00107 * 359.11597 * 6 5 4 8 8 O 1.34229 * 120.00115 * 179.12383 * 6 5 4 9 9 C 1.46898 * 110.99813 * 163.16224 * 4 3 2 10 10 C 1.50700 * 109.47162 * 293.94852 * 9 4 3 11 11 O 1.21296 * 119.99853 * 0.02562 * 10 9 4 12 12 N 1.34781 * 119.99888 * 180.02562 * 10 9 4 13 13 C 1.39933 * 119.99573 * 174.89170 * 12 10 9 14 14 C 1.38682 * 120.11900 * 343.06286 * 13 12 10 15 15 C 1.38221 * 120.02063 * 179.97438 * 14 13 12 16 16 C 1.38394 * 120.24742 * 0.02703 * 15 14 13 17 17 C 1.38077 * 120.23332 * 359.97278 * 16 15 14 18 18 C 1.38993 * 119.97361 * 0.02562 * 17 16 15 19 19 S 1.76202 * 120.12101 * 180.02562 * 18 17 16 20 20 C 1.76194 * 100.00107 * 352.44545 * 19 18 17 21 21 H 1.07997 * 120.00112 * 358.26735 * 20 19 18 22 22 C 1.38692 * 120.00368 * 178.26791 * 20 19 18 23 23 N 1.31650 * 120.00400 * 180.02562 * 22 20 19 24 24 Si 1.86808 * 119.99491 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46857 * 90.00403 * 24 22 20 26 26 H 1.48499 * 109.46767 * 210.00081 * 24 22 20 27 27 H 1.48497 * 109.47279 * 330.00173 * 24 22 20 28 28 H 4.40884 * 5.52236 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.46986 * 126.50287 * 3 2 1 30 30 H 1.09001 * 109.46819 * 6.50315 * 3 2 1 31 31 H 1.08993 * 109.47575 * 280.53632 * 5 4 3 32 32 H 1.09003 * 109.46805 * 40.54060 * 5 4 3 33 33 H 0.96695 * 117.00463 * 179.97438 * 8 6 5 34 34 H 1.09000 * 109.46890 * 173.95008 * 9 4 3 35 35 H 1.09000 * 109.47220 * 53.95353 * 9 4 3 36 36 H 0.96992 * 119.99886 * 354.89585 * 12 10 9 37 37 H 1.08003 * 119.98519 * 0.25817 * 14 13 12 38 38 H 1.07997 * 119.87257 * 179.97438 * 15 14 13 39 39 H 1.08004 * 119.87806 * 179.97438 * 16 15 14 40 40 H 1.07997 * 120.01371 * 180.02562 * 17 16 15 41 41 H 0.96999 * 119.99813 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1354 0.5530 1.2702 5 6 2.9298 2.0065 1.3261 6 6 2.9829 2.4665 2.7602 7 8 3.1567 1.6634 3.6462 8 8 2.8370 3.7682 3.0534 9 6 4.5486 0.2127 1.4824 10 6 4.6849 -1.2772 1.6633 11 8 3.7015 -1.9859 1.6192 12 7 5.8995 -1.8221 1.8740 13 6 6.0147 -3.1895 2.1481 14 6 4.9029 -3.9150 2.5489 15 6 5.0189 -5.2657 2.8187 16 6 6.2425 -5.8995 2.6910 17 6 7.3563 -5.1871 2.2926 18 6 7.2503 -3.8285 2.0189 19 16 8.6689 -2.9159 1.5097 20 6 9.9179 -4.1367 1.7424 21 1 9.6571 -5.1078 2.1364 22 6 11.2360 -3.8506 1.4195 23 7 12.1692 -4.7629 1.5929 24 14 11.6871 -2.1710 0.7374 25 1 12.0232 -1.2558 1.8575 26 1 12.8599 -2.3016 -0.1641 27 1 10.5368 -1.6206 -0.0235 28 1 -1.0501 0.0001 -0.0002 29 1 3.0090 0.6121 -0.8261 30 1 3.0097 -1.0203 -0.1164 31 1 3.7120 2.5064 0.7550 32 1 1.9564 2.2523 0.9016 33 1 2.8781 4.0152 3.9874 34 1 4.9150 0.7219 2.3738 35 1 5.1322 0.5287 0.6178 36 1 6.6935 -1.2665 1.8357 37 1 3.9451 -3.4254 2.6459 38 1 4.1516 -5.8283 3.1311 39 1 6.3265 -6.9550 2.9037 40 1 8.3093 -5.6854 2.1938 41 1 13.0911 -4.5626 1.3675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588420267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:30 Heat of formation + Delta-G solvation = -36.847719 kcal Electronic energy + Delta-G solvation = -27137.547220 eV Core-core repulsion = 23110.470623 eV Total energy + Delta-G solvation = -4027.076597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.79721 -41.13046 -39.52667 -38.13133 -36.90799 -35.82356 -34.76890 -33.93096 -31.92960 -31.33648 -29.93827 -28.88621 -28.02566 -25.36605 -24.03906 -23.45097 -22.11000 -21.36015 -20.23255 -19.37782 -18.82980 -18.57543 -18.26506 -17.70267 -17.62050 -17.16048 -16.94643 -16.72298 -16.07521 -15.99369 -15.52911 -15.36073 -15.29537 -14.88895 -14.69560 -14.30649 -14.10641 -13.93285 -13.73050 -13.70582 -13.42880 -13.10723 -13.04036 -12.97463 -12.87318 -12.39127 -12.33357 -11.66424 -11.58843 -11.50822 -11.39403 -11.32475 -11.08151 -10.86803 -10.58051 -10.49097 -9.53554 -9.20668 -8.55818 -8.51426 -6.29403 0.30451 0.48552 1.00929 1.27257 1.30580 1.40759 1.49528 1.58398 1.61592 1.95617 1.97981 2.16908 2.18365 2.51410 2.80219 2.94109 3.02913 3.44799 3.64978 4.00432 4.04908 4.15344 4.22925 4.26168 4.32337 4.39389 4.46847 4.50878 4.56066 4.64602 4.68464 5.02684 5.15637 5.27352 5.41460 5.56179 5.62942 5.67698 5.69564 5.70450 5.73979 6.12967 6.21692 6.42459 6.75702 6.84576 7.06052 7.07544 8.56061 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.002951 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.363666 B = 9487.465068 C =10835.899199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.209 4.209 3 C 0.164 3.836 4 N -0.532 5.532 5 C 0.064 3.936 6 C 0.479 3.521 7 O -0.538 6.538 8 O -0.513 6.513 9 C 0.044 3.956 10 C 0.513 3.487 11 O -0.529 6.529 12 N -0.656 5.656 13 C 0.141 3.859 14 C -0.139 4.139 15 C -0.119 4.119 16 C -0.124 4.124 17 C -0.133 4.133 18 C -0.117 4.117 19 S -0.046 6.046 20 C -0.550 4.550 21 H 0.079 0.921 22 C 0.044 3.956 23 N -0.913 5.913 24 Si 0.915 3.085 25 H -0.257 1.257 26 H -0.262 1.262 27 H -0.220 1.220 28 H 0.243 0.757 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.428 0.572 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.417 0.583 37 H 0.157 0.843 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.577 17.892 -3.134 26.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.209 4.209 3 C 0.039 3.961 4 N -0.257 5.257 5 C -0.064 4.064 6 C 0.321 3.679 7 O -0.427 6.427 8 O -0.327 6.327 9 C -0.086 4.086 10 C 0.301 3.699 11 O -0.406 6.406 12 N -0.300 5.300 13 C 0.038 3.962 14 C -0.160 4.160 15 C -0.141 4.141 16 C -0.145 4.145 17 C -0.158 4.158 18 C -0.233 4.233 19 S 0.202 5.798 20 C -0.697 4.697 21 H 0.097 0.903 22 C -0.162 4.162 23 N -0.549 5.549 24 Si 0.735 3.265 25 H -0.181 1.181 26 H -0.187 1.187 27 H -0.143 1.143 28 H 0.260 0.740 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.150 0.850 33 H 0.289 0.711 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.255 0.745 37 H 0.174 0.826 38 H 0.167 0.833 39 H 0.158 0.842 40 H 0.136 0.864 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.016 18.113 -3.416 27.210 hybrid contribution 1.523 -0.845 0.628 1.852 sum -18.493 17.268 -2.789 25.455 Atomic orbital electron populations 1.25644 0.96766 0.99985 0.98712 1.23135 0.94808 1.01352 1.01619 1.19147 0.85542 1.02004 0.89447 1.60815 1.17651 1.11319 1.35946 1.21695 1.07408 0.87302 0.89949 1.23640 0.71450 0.79908 0.92888 1.90778 1.45744 1.55679 1.50500 1.84456 1.84249 1.26545 1.37444 1.22056 0.90057 0.90760 1.05726 1.21127 0.81703 0.91682 0.75342 1.90554 1.38038 1.62911 1.49062 1.43487 1.10473 1.07231 1.68850 1.17409 0.92910 0.84072 1.01762 1.21786 0.98815 0.95091 1.00355 1.21302 0.97840 0.94263 1.00712 1.21257 0.92150 1.00583 1.00474 1.21350 0.99892 0.93120 1.01452 1.21841 0.96702 0.97758 1.06996 1.81868 0.97350 1.20737 1.79824 1.22857 0.94330 1.01943 1.50537 0.90300 1.25737 0.94966 1.01506 0.93967 1.70029 1.02297 1.36069 1.46511 0.85906 0.81115 0.79144 0.80346 1.18096 1.18666 1.14274 0.74023 0.88830 0.88769 0.86018 0.84960 0.71058 0.86342 0.86973 0.74472 0.82619 0.83306 0.84218 0.86416 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.35 19.25 74.32 1.43 -1.91 16 2 C -0.21 -4.23 12.62 31.13 0.39 -3.84 16 3 C 0.16 2.99 5.01 84.50 0.42 3.41 16 4 N -0.53 -10.04 3.73 -916.47 -3.42 -13.45 16 5 C 0.06 0.77 5.42 85.56 0.46 1.24 16 6 C 0.48 7.77 7.97 71.24 0.57 8.34 16 7 O -0.54 -13.78 16.01 21.95 0.35 -13.43 16 8 O -0.51 -5.28 13.42 -51.40 -0.69 -5.97 16 9 C 0.04 0.82 5.07 85.56 0.43 1.25 16 10 C 0.51 14.27 7.25 87.66 0.64 14.90 16 11 O -0.53 -17.74 11.26 -3.08 -0.03 -17.78 16 12 N -0.66 -20.21 5.26 -302.99 -1.59 -21.81 16 13 C 0.14 5.31 6.55 38.31 0.25 5.56 16 14 C -0.14 -5.00 8.84 22.37 0.20 -4.80 16 15 C -0.12 -3.92 10.04 22.30 0.22 -3.69 16 16 C -0.12 -4.42 10.03 22.27 0.22 -4.20 16 17 C -0.13 -5.78 9.23 22.41 0.21 -5.57 16 18 C -0.12 -5.03 6.11 22.81 0.14 -4.89 16 19 S -0.05 -2.07 18.24 -56.49 -1.03 -3.10 16 20 C -0.55 -30.48 9.57 67.93 0.65 -29.83 16 21 H 0.08 4.76 5.14 -2.91 -0.01 4.74 16 22 C 0.04 2.44 5.50 84.83 0.47 2.91 16 23 N -0.91 -53.49 13.97 21.63 0.30 -53.19 16 24 Si 0.91 39.80 27.73 68.60 1.90 41.71 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.22 -8.81 6.74 99.48 0.67 -8.14 16 28 H 0.24 2.34 7.80 -4.41 -0.03 2.31 16 29 H 0.09 1.04 8.04 -2.39 -0.02 1.03 16 30 H 0.09 2.21 5.81 -2.39 -0.01 2.20 16 31 H 0.12 0.61 8.00 -2.39 -0.02 0.59 16 32 H 0.13 1.32 7.16 -2.39 -0.02 1.31 16 33 H 0.43 1.48 9.10 -74.06 -0.67 0.80 16 34 H 0.12 2.17 6.72 -2.39 -0.02 2.16 16 35 H 0.11 1.23 8.12 -2.39 -0.02 1.21 16 36 H 0.42 11.57 7.45 -92.71 -0.69 10.88 16 37 H 0.16 5.65 5.21 -5.34 -0.03 5.63 16 38 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 39 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 40 H 0.12 5.73 5.01 -2.91 -0.01 5.71 16 41 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -78.04 367.04 2.20 -75.83 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.29 Total: 32.31 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 6.71 Total: -21.12 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -4.71 Total: -88.45 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -0.37 Total: -37.18 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.90 Total: 41.71 kcal Atomic # 16 Polarization: -2.07 SS G_CDS: -1.03 Total: -3.10 kcal Total: -78.04 2.20 -75.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588420267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.986 kcal (2) G-P(sol) polarization free energy of solvation -78.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds