Wall clock time and date at job start Wed Apr 1 2020 04:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31387 * 1 3 3 Si 1.86801 * 120.00028 * 2 1 4 4 H 1.48494 * 109.47481 * 245.00106 * 3 2 1 5 5 H 1.48501 * 109.46881 * 5.00165 * 3 2 1 6 6 H 1.48505 * 109.47107 * 124.99786 * 3 2 1 7 7 C 1.39015 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00124 * 207.04922 * 7 2 1 9 9 N 1.36877 * 119.99616 * 27.04589 * 7 2 1 10 10 C 1.46497 * 119.99918 * 196.57777 * 9 7 2 11 11 C 1.53009 * 109.47192 * 340.37966 * 10 9 7 12 12 C 1.50695 * 109.46843 * 108.29268 * 11 10 9 13 13 O 1.20831 * 120.00476 * 0.02562 * 12 11 10 14 14 O 1.34234 * 119.99816 * 180.02562 * 12 11 10 15 15 C 1.34774 * 120.00366 * 16.58421 * 9 7 2 16 16 O 1.21749 * 119.99570 * 312.03373 * 15 9 7 17 17 C 1.46540 * 120.00360 * 132.02786 * 15 9 7 18 18 C 1.37996 * 126.24265 * 187.98994 * 17 15 9 19 19 C 1.39809 * 107.08647 * 180.22343 * 18 17 15 20 20 C 1.35486 * 107.87493 * 359.77710 * 19 18 17 21 21 N 1.35583 * 108.88571 * 0.02562 * 20 19 18 22 22 C 1.46498 * 125.68578 * 179.97438 * 21 20 19 23 23 C 1.50699 * 109.47027 * 286.87701 * 22 21 20 24 24 C 1.33390 * 125.20507 * 227.30819 * 23 22 21 25 25 C 1.38422 * 114.92235 * 179.97438 * 24 23 22 26 26 C 1.33384 * 114.91871 * 0.24964 * 25 24 23 27 27 S 1.75878 * 109.59696 * 359.63446 * 26 25 24 28 28 H 0.96998 * 120.00244 * 4.98916 * 1 2 3 29 29 H 1.09002 * 109.46829 * 100.37695 * 10 9 7 30 30 H 1.08999 * 109.47423 * 220.38370 * 10 9 7 31 31 H 1.08999 * 109.47176 * 228.29823 * 11 10 9 32 32 H 1.08997 * 109.46976 * 348.29476 * 11 10 9 33 33 H 0.96700 * 117.00140 * 179.97438 * 14 12 11 34 34 H 1.07997 * 126.45662 * 359.97438 * 18 17 15 35 35 H 1.07998 * 126.06453 * 179.79736 * 19 18 17 36 36 H 1.08003 * 125.55562 * 180.02562 * 20 19 18 37 37 H 0.94909 * 85.63866 * 65.24431 * 30 10 9 38 38 H 1.09007 * 109.46949 * 46.87739 * 22 21 20 39 39 H 1.08004 * 122.53501 * 359.97438 * 24 23 22 40 40 H 1.08001 * 122.53912 * 179.97438 * 25 24 23 41 41 H 1.08009 * 125.20069 * 179.75870 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 3.0078 1.7507 -1.2688 5 1 1.2875 2.7438 0.1221 6 1 3.1908 1.6449 1.1469 7 6 2.0090 -1.2039 -0.0005 8 1 3.0004 -1.2552 0.4248 9 7 1.4369 -2.3242 -0.5401 10 6 1.9836 -3.6475 -0.2303 11 6 3.4186 -3.4998 0.2799 12 6 3.4582 -3.7882 1.7584 13 8 2.4430 -4.0821 2.3441 14 8 4.6213 -3.7184 2.4249 15 6 0.3706 -2.2099 -1.3564 16 8 -0.5713 -1.5095 -1.0330 17 6 0.3449 -2.9285 -2.6332 18 6 -0.5989 -2.7873 -3.6300 19 6 -0.2418 -3.6618 -4.6607 20 6 0.8911 -4.3043 -4.2872 21 7 1.2594 -3.8658 -3.0582 22 6 2.4322 -4.3178 -2.3056 23 6 2.1873 -5.7096 -1.7821 24 6 2.4202 -6.1131 -0.5323 25 6 2.1173 -7.4404 -0.2818 26 6 1.6432 -8.1160 -1.3296 27 16 1.5500 -7.0502 -2.7256 28 1 -0.4850 0.8368 -0.0731 29 1 1.3723 -4.1226 0.5370 30 1 1.9796 -4.2622 -1.1304 31 1 4.0650 -4.2032 -0.2450 32 1 3.7657 -2.4827 0.0986 33 1 4.5967 -3.9114 3.3722 34 1 -1.4546 -2.1287 -3.6149 35 1 -0.7743 -3.8004 -5.5900 36 1 1.4153 -5.0449 -4.8730 37 1 2.6111 -3.6406 -1.4703 38 1 3.3037 -4.3239 -2.9603 39 1 2.8153 -5.4541 0.2268 40 1 2.2584 -7.8955 0.6874 41 1 1.3581 -9.1578 -1.3214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072257.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:16 Heat of formation + Delta-G solvation = 188.592496 kcal Electronic energy + Delta-G solvation = -30149.325681 eV Core-core repulsion = 26132.024906 eV Total energy + Delta-G solvation = -4017.300776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.59227 -41.41353 -40.14902 -39.45826 -37.40151 -36.95454 -34.95437 -33.68767 -32.30761 -30.46709 -29.95743 -27.73674 -26.99521 -25.36432 -23.95909 -23.37082 -21.99924 -21.32933 -20.67811 -20.16995 -19.34428 -19.14138 -18.25372 -17.81900 -17.39967 -17.08074 -16.80509 -16.49076 -16.39919 -15.85726 -15.82213 -15.52746 -14.94795 -14.59496 -14.17841 -14.09105 -13.83960 -13.64139 -13.60040 -13.41826 -13.22160 -13.17545 -13.03770 -12.88674 -12.69434 -12.63869 -12.52860 -12.14995 -11.93957 -11.60911 -11.60105 -10.94617 -10.50464 -9.88496 -9.73366 -9.65915 -9.40695 -9.30983 -8.92302 -7.55519 -5.37975 -0.14473 0.54021 0.75905 1.01060 1.23391 1.41129 1.46392 1.52290 1.63287 1.98259 2.01067 2.09094 2.38779 2.66683 3.06912 3.24109 3.33174 3.43142 3.70503 3.99049 4.12530 4.21555 4.25802 4.40522 4.46209 4.49368 4.58475 4.62906 4.66951 4.81051 4.91636 5.02112 5.06347 5.26609 5.27435 5.40351 5.43947 5.50473 5.64814 5.98365 6.05805 6.19803 6.46818 6.95518 7.02080 7.43196 7.71919 8.21786 8.95709 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.006094 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.649554 B = 4593.885075 C = 6703.139407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C -0.025 4.025 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.300 1.300 6 H -0.261 1.261 7 C -0.366 4.366 8 H 0.113 0.887 9 N -0.535 5.535 10 C -0.046 4.046 11 C -0.146 4.146 12 C 0.487 3.513 13 O -0.546 6.546 14 O -0.506 6.506 15 C 0.540 3.460 16 O -0.461 6.461 17 C -0.059 4.059 18 C -0.160 4.160 19 C -0.206 4.206 20 C 0.011 3.989 21 N -0.418 5.418 22 C 0.034 3.966 23 C -0.241 4.241 24 C -0.134 4.134 25 C -0.153 4.153 26 C -0.201 4.201 27 S 0.153 5.847 28 H 0.238 0.762 29 H 0.024 0.976 30 H 0.232 0.768 31 H 0.150 0.850 32 H 0.138 0.862 33 H 0.425 0.575 34 H 0.122 0.878 35 H 0.167 0.833 36 H 0.200 0.800 37 H 0.228 0.772 38 H 0.136 0.864 39 H 0.146 0.854 40 H 0.157 0.843 41 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.510 -17.360 -6.786 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.229 4.229 3 Si 0.775 3.225 4 H -0.193 1.193 5 H -0.227 1.227 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.130 0.870 9 N -0.267 5.267 10 C -0.163 4.163 11 C -0.183 4.183 12 C 0.330 3.670 13 O -0.436 6.436 14 O -0.319 6.319 15 C 0.327 3.673 16 O -0.328 6.328 17 C -0.173 4.173 18 C -0.186 4.186 19 C -0.230 4.230 20 C -0.122 4.122 21 N -0.094 5.094 22 C -0.086 4.086 23 C -0.359 4.359 24 C -0.166 4.166 25 C -0.182 4.182 26 C -0.336 4.336 27 S 0.418 5.582 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.245 0.755 31 H 0.168 0.832 32 H 0.156 0.844 33 H 0.287 0.713 34 H 0.140 0.860 35 H 0.185 0.815 36 H 0.216 0.784 37 H 0.243 0.757 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.174 0.826 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 10.351 -17.119 -8.034 21.558 hybrid contribution 0.015 1.417 2.814 3.151 sum 10.365 -15.702 -5.220 19.526 Atomic orbital electron populations 1.71120 1.06492 1.24097 1.44101 1.26213 0.95668 1.02872 0.98171 0.85660 0.78185 0.79383 0.79229 1.19281 1.22698 1.18567 1.19537 0.99477 0.86452 1.43713 0.87024 1.43128 1.31591 1.04406 1.47588 1.26080 0.92938 0.89478 1.07840 1.22041 0.98891 1.08719 0.88658 1.23378 0.80374 0.71690 0.91530 1.90728 1.36507 1.45848 1.70507 1.84480 1.34783 1.82666 1.29989 1.17810 0.84530 0.81524 0.83401 1.90991 1.32898 1.34873 1.74087 1.21811 0.95971 1.00791 0.98744 1.21358 0.99429 1.03046 0.94801 1.21020 0.99594 1.01303 1.01058 1.22420 0.99380 1.03485 0.86919 1.44195 1.19737 1.30624 1.14853 1.23194 0.88264 0.93424 1.03680 1.24482 1.13020 0.99038 0.99330 1.20933 1.02300 0.97625 0.95729 1.20358 1.03170 0.93394 1.01323 1.26191 1.06451 1.04994 0.96003 1.84024 1.62377 0.98821 1.13003 0.95013 0.95842 0.75454 0.83225 0.84414 0.71343 0.85957 0.81525 0.78367 0.75726 0.84633 0.83657 0.82583 0.78702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.86 9.05 21.68 0.20 -52.66 16 2 C -0.03 -1.47 5.04 84.95 0.43 -1.05 16 3 Si 0.95 44.57 29.63 68.60 2.03 46.60 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.37 -19.71 8.87 84.09 0.75 -18.97 16 8 H 0.11 5.37 5.41 -2.91 -0.02 5.36 16 9 N -0.53 -27.23 2.63 -866.41 -2.28 -29.51 16 10 C -0.05 -1.82 2.80 86.38 0.24 -1.58 16 11 C -0.15 -4.51 3.87 29.85 0.12 -4.39 16 12 C 0.49 15.72 7.44 71.23 0.53 16.25 16 13 O -0.55 -22.43 15.79 21.95 0.35 -22.09 16 14 O -0.51 -11.84 13.42 -51.46 -0.69 -12.53 16 15 C 0.54 29.89 6.53 86.41 0.56 30.45 16 16 O -0.46 -29.86 12.73 -4.51 -0.06 -29.92 16 17 C -0.06 -2.65 6.78 40.33 0.27 -2.38 16 18 C -0.16 -6.58 10.67 22.59 0.24 -6.34 16 19 C -0.21 -6.28 10.81 22.01 0.24 -6.04 16 20 C 0.01 0.31 10.07 83.48 0.84 1.15 16 21 N -0.42 -14.00 2.79 -783.10 -2.18 -16.18 16 22 C 0.03 0.93 5.15 85.63 0.44 1.38 16 23 C -0.24 -6.08 5.57 24.59 0.14 -5.95 16 24 C -0.13 -3.42 7.77 21.22 0.16 -3.25 16 25 C -0.15 -3.28 10.18 21.21 0.22 -3.06 16 26 C -0.20 -3.64 11.23 66.72 0.75 -2.89 16 27 S 0.15 3.07 21.90 -56.49 -1.24 1.83 16 28 H 0.24 15.05 8.32 -92.71 -0.77 14.28 16 29 H 0.02 1.11 5.84 -2.39 -0.01 1.10 16 30 H 0.23 7.75 0.31 -138.59 -0.04 7.71 16 31 H 0.15 3.11 6.60 -2.39 -0.02 3.09 16 32 H 0.14 4.53 5.05 -2.39 -0.01 4.52 16 33 H 0.43 6.32 9.10 -74.06 -0.67 5.64 16 34 H 0.12 5.28 8.06 -2.91 -0.02 5.26 16 35 H 0.17 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.20 3.58 7.94 -2.91 -0.02 3.55 16 37 H 0.23 7.32 1.55 -81.15 -0.13 7.19 16 38 H 0.14 2.70 8.14 -2.38 -0.02 2.68 16 39 H 0.15 3.95 2.90 -2.91 -0.01 3.95 16 40 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -86.11 335.41 2.37 -83.74 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: 0.31 Total: 37.38 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 5.93 Total: -6.67 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -4.26 Total: -98.35 kcal Atomic # 8 Polarization: -64.13 SS G_CDS: -0.40 Total: -64.53 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.24 Total: 1.83 kcal Total: -86.11 2.37 -83.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072257.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 272.332 kcal (2) G-P(sol) polarization free energy of solvation -86.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds