Wall clock time and date at job start Wed Apr 1 2020 04:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99934 * 2 1 4 4 H 1.48501 * 109.47140 * 90.00222 * 3 2 1 5 5 H 1.48498 * 109.47078 * 209.99793 * 3 2 1 6 6 H 1.48502 * 109.47470 * 330.00433 * 3 2 1 7 7 C 1.37873 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99834 * 5.00916 * 7 2 1 9 9 C 1.50695 * 120.00009 * 185.01358 * 7 2 1 10 10 O 1.42905 * 112.94574 * 53.34303 * 9 7 2 11 11 C 1.53944 * 113.74373 * 281.60567 * 9 7 2 12 12 N 1.47578 * 86.11858 * 222.04995 * 11 9 7 13 13 C 1.34783 * 134.48935 * 204.64360 * 12 11 9 14 14 O 1.21587 * 119.99739 * 180.02562 * 13 12 11 15 15 N 1.34767 * 120.00320 * 359.97438 * 13 12 11 16 16 C 1.39943 * 120.00443 * 185.39151 * 15 13 12 17 17 C 1.38894 * 120.06048 * 214.47427 * 16 15 13 18 18 C 1.38109 * 119.98004 * 179.76692 * 17 16 15 19 19 C 1.38264 * 120.09293 * 0.51029 * 18 17 16 20 20 C 1.50703 * 119.94358 * 179.72008 * 19 18 17 21 21 F 1.39905 * 109.46966 * 0.02822 * 20 19 18 22 22 F 1.39900 * 109.46750 * 120.02293 * 20 19 18 23 23 F 1.39894 * 109.47188 * 240.02342 * 20 19 18 24 24 C 1.38488 * 120.11436 * 359.74402 * 19 18 17 25 25 F 1.35096 * 119.99139 * 179.97438 * 24 19 18 26 26 C 1.38355 * 120.01996 * 0.02562 * 24 19 18 27 27 C 1.47577 * 91.01693 * 24.63915 * 12 11 9 28 28 H 0.96997 * 120.00123 * 174.98839 * 1 2 3 29 29 H 0.96700 * 113.99304 * 304.63176 * 10 9 7 30 30 H 1.09004 * 113.76882 * 336.35241 * 11 9 7 31 31 H 1.09003 * 113.76778 * 107.74555 * 11 9 7 32 32 H 0.97011 * 119.99937 * 5.39422 * 15 13 12 33 33 H 1.07999 * 120.01140 * 0.02562 * 17 16 15 34 34 H 1.07997 * 119.94985 * 180.25691 * 18 17 16 35 35 H 1.07999 * 120.04799 * 180.02562 * 26 24 19 36 36 H 1.08997 * 113.77014 * 221.05657 * 27 12 11 37 37 H 1.09002 * 113.77011 * 89.65751 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6528 -0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4676 -2.1275 -0.0826 9 6 3.5071 -1.1965 0.1135 10 8 3.9815 -0.4592 1.2420 11 6 4.2292 -0.8534 -1.2021 12 7 5.1644 -1.9412 -0.8556 13 6 6.4435 -2.2240 -1.1728 14 8 6.9740 -3.2228 -0.7262 15 7 7.1341 -1.4004 -1.9857 16 6 8.4223 -1.7502 -2.4059 17 6 9.3851 -0.7663 -2.5906 18 6 10.6573 -1.1138 -3.0006 19 6 10.9713 -2.4393 -3.2379 20 6 12.3587 -2.8141 -3.6914 21 9 13.1420 -1.6599 -3.7984 22 9 12.9348 -3.6838 -2.7592 23 9 12.2872 -3.4465 -4.9372 24 6 10.0128 -3.4230 -3.0601 25 9 10.3222 -4.7172 -3.2932 26 6 8.7382 -3.0806 -2.6449 27 6 4.1367 -2.5949 -0.0222 28 1 -0.4850 -0.8368 -0.0734 29 1 3.6708 0.4560 1.2725 30 1 3.6351 -1.0523 -2.0941 31 1 4.6877 0.1354 -1.2066 32 1 6.7382 -0.5649 -2.2796 33 1 9.1402 0.2699 -2.4095 34 1 11.4067 -0.3488 -3.1401 35 1 7.9906 -3.8474 -2.5056 36 1 4.5214 -2.9964 0.9152 37 1 3.5154 -3.3052 -0.5676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647320811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:27 Heat of formation + Delta-G solvation = -189.871130 kcal Electronic energy + Delta-G solvation = -30242.764720 eV Core-core repulsion = 25100.982614 eV Total energy + Delta-G solvation = -5141.782107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -50.44330 -49.29106 -47.90277 -47.83343 -40.82746 -39.47192 -38.00291 -34.98798 -34.59401 -32.74456 -31.37400 -31.00172 -28.80782 -26.23775 -25.68890 -24.81503 -23.61184 -22.39258 -20.75864 -19.57334 -18.93460 -18.73381 -18.67986 -18.43686 -18.13547 -17.54695 -16.56853 -16.21571 -15.97095 -15.91953 -15.52591 -15.12931 -14.87987 -14.70335 -14.68933 -14.42342 -14.29074 -14.05598 -14.01066 -13.70096 -13.61692 -13.60313 -13.27323 -12.98965 -12.80340 -12.37935 -12.20102 -12.18551 -11.91826 -11.53477 -10.97911 -10.77480 -10.53319 -10.29206 -9.88266 -9.63800 -9.24685 -9.14876 -8.81137 -8.67611 -8.20663 -6.83381 -4.60481 0.41883 0.77005 2.30666 2.41536 2.84984 2.96902 3.01188 3.20341 3.34151 3.40311 3.59081 3.72479 3.93199 4.05566 4.14693 4.37174 4.60463 4.64402 4.78450 4.97264 5.04779 5.37266 5.39268 5.44966 5.57434 5.68156 5.82413 5.85265 5.95678 6.03830 6.11135 6.15934 6.43690 6.51269 7.05110 7.34557 7.95200 8.09027 8.33432 8.46092 8.52662 9.15813 10.52890 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.027298 B = 0.002326 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.471638 B =12036.867506 C =12572.291063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.034 3.966 3 Si 1.033 2.967 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.279 1.279 7 C -0.612 4.612 8 H 0.073 0.927 9 C 0.199 3.801 10 O -0.554 6.554 11 C 0.056 3.944 12 N -0.646 5.646 13 C 0.721 3.279 14 O -0.581 6.581 15 N -0.686 5.686 16 C 0.247 3.753 17 C -0.166 4.166 18 C -0.021 4.021 19 C -0.254 4.254 20 C 0.517 3.483 21 F -0.176 7.176 22 F -0.174 7.174 23 F -0.175 7.175 24 C 0.175 3.825 25 F -0.122 7.122 26 C -0.164 4.164 27 C 0.149 3.851 28 H 0.275 0.725 29 H 0.356 0.644 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.413 0.587 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.077 0.923 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.264 1.060 -8.908 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.174 4.174 3 Si 0.862 3.138 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.205 1.205 7 C -0.650 4.650 8 H 0.091 0.909 9 C 0.158 3.842 10 O -0.363 6.363 11 C -0.067 4.067 12 N -0.383 5.383 13 C 0.425 3.575 14 O -0.459 6.459 15 N -0.333 5.333 16 C 0.148 3.852 17 C -0.187 4.187 18 C -0.039 4.039 19 C -0.257 4.257 20 C 0.463 3.537 21 F -0.157 7.157 22 F -0.155 7.155 23 F -0.156 7.156 24 C 0.154 3.846 25 F -0.100 7.100 26 C -0.185 4.185 27 C 0.027 3.973 28 H 0.086 0.914 29 H 0.206 0.794 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.250 0.750 33 H 0.163 0.837 34 H 0.169 0.831 35 H 0.177 0.823 36 H 0.096 0.904 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.816 1.280 -8.408 21.564 hybrid contribution -0.102 -1.025 -0.500 1.144 sum 19.714 0.256 -8.908 21.635 Atomic orbital electron populations 1.70757 1.06676 1.31408 1.43223 1.25833 0.96542 1.02480 0.92535 0.84272 0.75584 0.76136 0.77831 1.20206 1.19516 1.20499 1.22245 0.89321 0.96285 1.57112 0.90897 1.20474 0.93261 0.88669 0.81784 1.86467 1.75669 1.26750 1.47462 1.24847 0.88987 0.89735 1.03084 1.49363 1.07889 1.29553 1.51448 1.15452 0.80833 0.82362 0.78852 1.90928 1.68820 1.28073 1.58064 1.42784 1.14523 1.25147 1.50815 1.17378 0.84233 0.92549 0.91019 1.20940 0.91775 1.00011 1.05992 1.20622 0.96600 0.93538 0.93188 1.19930 0.93133 0.96043 1.16622 1.17979 0.85846 0.74586 0.75316 1.93160 1.76946 1.49621 1.95997 1.93238 1.86320 1.70395 1.65585 1.93228 1.96585 1.82660 1.43146 1.16969 0.92755 0.77866 0.96972 1.91574 1.93244 1.33796 1.91430 1.21126 0.96245 0.97663 1.03497 1.23251 0.84019 0.96804 0.93267 0.91443 0.79411 0.88688 0.90979 0.75019 0.83674 0.83100 0.82264 0.90441 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.11 13.70 55.43 0.76 -23.35 16 2 C 0.03 0.85 5.47 -17.82 -0.10 0.75 16 3 Si 1.03 20.36 24.81 -169.99 -4.22 16.14 16 4 H -0.28 -5.20 6.95 56.52 0.39 -4.80 16 5 H -0.27 -4.49 4.78 56.52 0.27 -4.22 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.61 -14.76 9.04 -34.44 -0.31 -15.07 16 8 H 0.07 1.89 8.04 -52.49 -0.42 1.47 16 9 C 0.20 4.15 1.06 -90.85 -0.10 4.05 16 10 O -0.55 -11.88 13.43 -35.23 -0.47 -12.36 16 11 C 0.06 0.97 6.56 -2.98 -0.02 0.95 16 12 N -0.65 -11.51 3.61 -184.08 -0.66 -12.18 16 13 C 0.72 12.48 8.49 -86.92 -0.74 11.74 16 14 O -0.58 -11.75 14.86 5.29 0.08 -11.67 16 15 N -0.69 -8.92 5.34 -14.23 -0.08 -8.99 16 16 C 0.25 2.98 6.25 -83.70 -0.52 2.46 16 17 C -0.17 -1.50 9.96 -39.39 -0.39 -1.89 16 18 C -0.02 -0.18 9.42 -39.62 -0.37 -0.55 16 19 C -0.25 -2.77 5.38 -104.52 -0.56 -3.34 16 20 C 0.52 5.62 3.02 36.01 0.11 5.72 16 21 F -0.18 -1.70 15.97 2.25 0.04 -1.66 16 22 F -0.17 -2.08 17.05 2.25 0.04 -2.05 16 23 F -0.17 -2.01 17.05 2.25 0.04 -1.97 16 24 C 0.17 2.21 7.12 -39.45 -0.28 1.93 16 25 F -0.12 -1.65 16.45 2.25 0.04 -1.61 16 26 C -0.16 -2.20 8.63 -39.33 -0.34 -2.54 16 27 C 0.15 2.86 8.23 -2.97 -0.02 2.83 16 28 H 0.27 7.45 8.72 -40.82 -0.36 7.10 16 29 H 0.36 7.03 4.34 45.56 0.20 7.22 16 30 H 0.10 1.58 8.09 -51.93 -0.42 1.16 16 31 H 0.07 1.12 6.48 -51.93 -0.34 0.78 16 32 H 0.41 4.26 8.44 -40.82 -0.34 3.91 16 33 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.15 0.92 7.15 -52.49 -0.38 0.54 16 35 H 0.16 2.41 6.52 -52.49 -0.34 2.07 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 LS Contribution 331.79 15.07 5.00 5.00 Total: -1.00 -29.10 331.79 -5.69 -34.80 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -2.60 Total: 12.85 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -3.65 Total: 7.06 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.02 Total: -44.52 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.39 Total: -24.03 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 0.15 Total: -7.29 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.22 Total: 16.14 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.10 -5.69 -34.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647320811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.076 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds