Wall clock time and date at job start Wed Apr 1 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39384 * 119.50682 * 2 1 4 4 C 1.36093 * 120.98931 * 180.25832 * 3 2 1 5 5 C 1.40544 * 119.65040 * 359.49271 * 4 3 2 6 6 C 1.40540 * 121.28471 * 180.24079 * 5 4 3 7 7 C 1.36092 * 119.65438 * 180.22923 * 6 5 4 8 8 S 1.76197 * 119.50321 * 179.97438 * 7 6 5 9 9 O 1.42103 * 106.40135 * 203.54138 * 8 7 6 10 10 O 1.42106 * 106.40394 * 336.45672 * 8 7 6 11 11 N 1.65600 * 107.22286 * 90.00111 * 8 7 6 12 12 C 1.46496 * 119.99894 * 64.99612 * 11 8 7 13 13 C 1.50701 * 109.47128 * 165.00358 * 12 11 8 14 14 O 1.21300 * 119.99665 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00257 * 180.02562 * 13 12 11 16 16 C 1.37098 * 119.99934 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00159 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99739 * 179.97438 * 16 15 13 19 19 N 1.31408 * 119.99833 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00207 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46814 * 90.00018 * 20 18 16 22 22 H 1.48498 * 109.47321 * 210.00237 * 20 18 16 23 23 H 1.48500 * 109.47009 * 330.00205 * 20 18 16 24 24 C 1.39375 * 120.99151 * 0.02562 * 7 6 5 25 25 C 1.36089 * 120.98526 * 0.02751 * 24 7 6 26 26 C 1.40540 * 119.65588 * 359.94914 * 25 24 7 27 27 C 1.36092 * 119.50821 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47577 * 90.00176 * 1 2 3 29 29 H 1.09004 * 109.47172 * 210.00748 * 1 2 3 30 30 H 1.09001 * 109.47234 * 330.00123 * 1 2 3 31 31 H 1.08002 * 119.50190 * 359.97041 * 3 2 1 32 32 H 1.07991 * 120.17355 * 179.74389 * 4 3 2 33 33 H 1.08004 * 120.17343 * 0.25933 * 6 5 4 34 34 H 0.97003 * 119.99631 * 244.99825 * 11 8 7 35 35 H 1.08994 * 109.47279 * 285.00274 * 12 11 8 36 36 H 1.08998 * 109.47241 * 45.00535 * 12 11 8 37 37 H 0.96998 * 119.99767 * 359.97438 * 15 13 12 38 38 H 0.97005 * 120.00151 * 179.97438 * 19 18 16 39 39 H 1.07992 * 119.50935 * 180.02562 * 24 7 6 40 40 H 1.08001 * 120.17539 * 180.02562 * 25 24 7 41 41 H 1.08003 * 120.16833 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1934 1.2131 0.0000 4 6 3.5539 1.2483 -0.0053 5 6 4.2806 0.0453 0.0000 6 6 5.6860 0.0416 -0.0001 7 6 6.3562 -1.1428 0.0004 8 16 8.1182 -1.1428 -0.0004 9 8 8.5192 -2.3929 -0.5443 10 8 8.5192 0.1066 -0.5460 11 7 8.6092 -1.1418 1.5811 12 6 8.3143 -2.2910 2.4404 13 6 9.1609 -2.2180 3.6850 14 8 9.9341 -1.2962 3.8392 15 7 9.0588 -3.1768 4.6267 16 6 9.8293 -3.1105 5.7587 17 1 10.5178 -2.2898 5.8961 18 6 9.7237 -4.0987 6.7298 19 7 10.4618 -4.0350 7.8151 20 14 8.5313 -5.5171 6.4932 21 1 9.2189 -6.6297 5.7899 22 1 8.0539 -5.9887 7.8179 23 1 7.3732 -5.0603 5.6836 24 6 5.6698 -2.3558 0.0005 25 6 4.3094 -2.3910 -0.0005 26 6 3.5826 -1.1881 -0.0005 27 6 2.1773 -1.1844 0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5140 30 1 -0.3634 0.8900 0.5138 31 1 1.6373 2.1389 -0.0005 32 1 4.0723 2.1956 -0.0094 33 1 6.2313 0.9739 -0.0001 34 1 9.0921 -0.3802 1.9384 35 1 7.2601 -2.2770 2.7167 36 1 8.5369 -3.2129 1.9032 37 1 8.4402 -3.9136 4.5035 38 1 10.3878 -4.7247 8.4932 39 1 6.2258 -3.2817 0.0013 40 1 3.7908 -3.3384 0.0000 41 1 1.6320 -2.1167 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663227933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:55 Heat of formation + Delta-G solvation = -65.792257 kcal Electronic energy + Delta-G solvation = -27158.143600 eV Core-core repulsion = 23129.811874 eV Total energy + Delta-G solvation = -4028.331726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78359 -38.64872 -37.33293 -37.23679 -35.86001 -34.76727 -33.80362 -33.41131 -32.13755 -31.79359 -29.93362 -27.46917 -27.39723 -24.19115 -23.83275 -22.85080 -22.38877 -19.74748 -19.58640 -18.72155 -18.31646 -17.48092 -17.40321 -16.78573 -15.95186 -15.74417 -15.51256 -15.08761 -14.99039 -14.71141 -14.48083 -14.45327 -14.10803 -13.76933 -13.56941 -13.45725 -13.23501 -12.84617 -12.68084 -12.50048 -12.42910 -12.35282 -12.10364 -12.02765 -11.87315 -11.79995 -11.57366 -11.27071 -11.26122 -10.91761 -10.66611 -10.40636 -10.06634 -9.70997 -9.51360 -9.04402 -8.75497 -8.33896 -8.30732 -6.40588 -3.93198 -0.05441 0.36542 0.50553 1.59678 2.36096 2.96482 3.01321 3.03207 3.10862 3.53724 3.59062 3.77853 4.02404 4.09383 4.28486 4.32802 4.44073 4.51219 4.62324 4.74662 4.82815 4.89459 4.96998 5.11932 5.13499 5.14023 5.24252 5.34205 5.38111 5.50848 5.56840 5.59414 5.64707 5.74545 5.80300 5.91041 5.98193 6.06752 6.16267 6.41511 6.56459 7.14807 7.45024 8.01546 8.45470 8.82421 9.29638 9.64065 10.71757 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.002905 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.607734 B = 9635.173116 C =11073.385401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.124 4.124 4 C -0.084 4.084 5 C -0.085 4.085 6 C 0.022 3.978 7 C -0.674 4.674 8 S 2.699 3.301 9 O -0.955 6.955 10 O -0.959 6.959 11 N -1.096 6.096 12 C 0.103 3.897 13 C 0.445 3.555 14 O -0.571 6.571 15 N -0.579 5.579 16 C -0.309 4.309 17 H 0.122 0.878 18 C 0.044 3.956 19 N -0.875 5.875 20 Si 0.879 3.121 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.268 1.268 24 C -0.041 4.041 25 C -0.123 4.123 26 C -0.007 4.007 27 C -0.123 4.123 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.147 0.853 34 H 0.429 0.571 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.373 0.627 38 H 0.275 0.725 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.310 5.080 -17.087 27.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.102 4.102 5 C -0.085 4.085 6 C 0.003 3.997 7 C -0.760 4.760 8 S 2.787 3.213 9 O -0.945 6.945 10 O -0.949 6.949 11 N -0.861 5.861 12 C -0.028 4.028 13 C 0.229 3.771 14 O -0.454 6.454 15 N -0.218 5.218 16 C -0.438 4.438 17 H 0.139 0.861 18 C -0.160 4.160 19 N -0.514 5.514 20 Si 0.705 3.295 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.193 1.193 24 C -0.059 4.059 25 C -0.141 4.141 26 C -0.007 4.007 27 C -0.141 4.141 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.165 0.835 34 H 0.268 0.732 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.207 0.793 38 H 0.086 0.914 39 H 0.160 0.840 40 H 0.153 0.847 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.277 5.441 -17.541 27.358 hybrid contribution -1.465 -0.926 0.556 1.820 sum -21.742 4.515 -16.985 27.957 Atomic orbital electron populations 1.20890 0.90814 1.03228 1.02657 1.19767 0.96509 0.93072 0.97003 1.20804 0.94296 0.97711 1.01427 1.21149 0.94366 0.97186 0.97467 1.18167 0.93374 0.93432 1.03575 1.20994 0.93454 0.97340 0.87961 1.30729 1.27852 0.99372 1.18057 1.01747 0.73513 0.73708 0.72297 1.93583 1.80344 1.44147 1.76408 1.93590 1.81337 1.43787 1.76200 1.55102 1.72054 1.28664 1.30246 1.20988 0.99742 0.89123 0.92943 1.19484 0.87330 0.85195 0.85081 1.90555 1.40854 1.35159 1.78799 1.42143 1.37992 1.22757 1.18877 1.19446 1.19161 1.11350 0.93832 0.86068 1.25067 0.97524 0.97991 0.95394 1.69618 1.38809 1.34643 1.08326 0.86676 0.81051 0.82927 0.78815 1.19346 1.20042 1.19319 1.20514 0.94878 0.96316 0.94236 1.21071 0.94154 0.97257 1.01635 1.18243 0.93553 0.93031 0.95910 1.20949 0.92581 0.98269 1.02313 0.90767 0.91197 0.91184 0.85525 0.84805 0.83518 0.73162 0.90055 0.88484 0.79341 0.91409 0.84028 0.84667 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.98 36.00 0.36 -0.23 16 2 C -0.06 -0.48 5.84 -104.97 -0.61 -1.10 16 3 C -0.12 -0.95 9.58 -39.93 -0.38 -1.33 16 4 C -0.08 -0.73 9.77 -39.48 -0.39 -1.12 16 5 C -0.08 -0.91 5.74 -106.83 -0.61 -1.52 16 6 C 0.02 0.25 9.22 -39.49 -0.36 -0.12 16 7 C -0.67 -8.08 5.91 -39.93 -0.24 -8.32 16 8 S 2.70 37.25 5.72 -107.50 -0.62 36.64 16 9 O -0.95 -15.17 16.70 -57.17 -0.95 -16.13 16 10 O -0.96 -15.00 17.21 -57.17 -0.98 -15.98 16 11 N -1.10 -16.33 5.93 -11.66 -0.07 -16.40 16 12 C 0.10 1.60 6.70 -5.20 -0.03 1.56 16 13 C 0.44 9.58 7.85 -10.99 -0.09 9.50 16 14 O -0.57 -14.49 15.30 5.54 0.08 -14.41 16 15 N -0.58 -13.16 5.09 -10.96 -0.06 -13.22 16 16 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 16 17 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 18 C 0.04 1.18 5.50 -17.47 -0.10 1.08 16 19 N -0.87 -24.85 13.96 55.50 0.77 -24.08 16 20 Si 0.88 18.59 27.74 -169.99 -4.71 13.87 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.27 -5.07 6.52 56.52 0.37 -4.70 16 24 C -0.04 -0.44 9.42 -39.93 -0.38 -0.82 16 25 C -0.12 -1.21 9.77 -39.49 -0.39 -1.59 16 26 C -0.01 -0.07 5.74 -106.83 -0.61 -0.69 16 27 C -0.12 -1.04 9.37 -39.49 -0.37 -1.41 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 30 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.15 1.41 7.54 -52.48 -0.40 1.02 16 34 H 0.43 6.69 7.70 -34.47 -0.27 6.43 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.32 7.75 -51.93 -0.40 0.92 16 37 H 0.37 7.30 5.76 -40.82 -0.24 7.07 16 38 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.14 1.36 7.57 -52.49 -0.40 0.96 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 365.63 15.07 5.51 5.51 Total: -1.00 -35.68 365.63 -10.00 -45.69 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -4.63 Total: 13.20 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -4.35 Total: -14.70 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.65 Total: -53.69 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -1.85 Total: -46.52 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.71 Total: 13.87 kcal Atomic # 16 Polarization: 37.25 SS G_CDS: -0.62 Total: 36.64 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.68 -10.00 -45.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663227933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.107 kcal (2) G-P(sol) polarization free energy of solvation -35.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds