Wall clock time and date at job start Wed Apr 1 2020 05:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39384 * 119.50682 * 2 1 4 4 C 1.36093 * 120.98931 * 180.25832 * 3 2 1 5 5 C 1.40544 * 119.65040 * 359.49271 * 4 3 2 6 6 C 1.40540 * 121.28471 * 180.24079 * 5 4 3 7 7 C 1.36092 * 119.65438 * 180.22923 * 6 5 4 8 8 S 1.76197 * 119.50321 * 179.97438 * 7 6 5 9 9 O 1.42103 * 106.40135 * 203.54138 * 8 7 6 10 10 O 1.42106 * 106.40394 * 336.45672 * 8 7 6 11 11 N 1.65600 * 107.22286 * 90.00111 * 8 7 6 12 12 C 1.46496 * 119.99894 * 64.99612 * 11 8 7 13 13 C 1.50701 * 109.47128 * 165.00358 * 12 11 8 14 14 O 1.21300 * 119.99665 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00257 * 180.02562 * 13 12 11 16 16 C 1.37098 * 119.99934 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00159 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99739 * 179.97438 * 16 15 13 19 19 N 1.31408 * 119.99833 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00207 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46814 * 90.00018 * 20 18 16 22 22 H 1.48498 * 109.47321 * 210.00237 * 20 18 16 23 23 H 1.48500 * 109.47009 * 330.00205 * 20 18 16 24 24 C 1.39375 * 120.99151 * 0.02562 * 7 6 5 25 25 C 1.36089 * 120.98526 * 0.02751 * 24 7 6 26 26 C 1.40540 * 119.65588 * 359.94914 * 25 24 7 27 27 C 1.36092 * 119.50821 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47577 * 90.00176 * 1 2 3 29 29 H 1.09004 * 109.47172 * 210.00748 * 1 2 3 30 30 H 1.09001 * 109.47234 * 330.00123 * 1 2 3 31 31 H 1.08002 * 119.50190 * 359.97041 * 3 2 1 32 32 H 1.07991 * 120.17355 * 179.74389 * 4 3 2 33 33 H 1.08004 * 120.17343 * 0.25933 * 6 5 4 34 34 H 0.97003 * 119.99631 * 244.99825 * 11 8 7 35 35 H 1.08994 * 109.47279 * 285.00274 * 12 11 8 36 36 H 1.08998 * 109.47241 * 45.00535 * 12 11 8 37 37 H 0.96998 * 119.99767 * 359.97438 * 15 13 12 38 38 H 0.97005 * 120.00151 * 179.97438 * 19 18 16 39 39 H 1.07992 * 119.50935 * 180.02562 * 24 7 6 40 40 H 1.08001 * 120.17539 * 180.02562 * 25 24 7 41 41 H 1.08003 * 120.16833 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1934 1.2131 0.0000 4 6 3.5539 1.2483 -0.0053 5 6 4.2806 0.0453 0.0000 6 6 5.6860 0.0416 -0.0001 7 6 6.3562 -1.1428 0.0004 8 16 8.1182 -1.1428 -0.0004 9 8 8.5192 -2.3929 -0.5443 10 8 8.5192 0.1066 -0.5460 11 7 8.6092 -1.1418 1.5811 12 6 8.3143 -2.2910 2.4404 13 6 9.1609 -2.2180 3.6850 14 8 9.9341 -1.2962 3.8392 15 7 9.0588 -3.1768 4.6267 16 6 9.8293 -3.1105 5.7587 17 1 10.5178 -2.2898 5.8961 18 6 9.7237 -4.0987 6.7298 19 7 10.4618 -4.0350 7.8151 20 14 8.5313 -5.5171 6.4932 21 1 9.2189 -6.6297 5.7899 22 1 8.0539 -5.9887 7.8179 23 1 7.3732 -5.0603 5.6836 24 6 5.6698 -2.3558 0.0005 25 6 4.3094 -2.3910 -0.0005 26 6 3.5826 -1.1881 -0.0005 27 6 2.1773 -1.1844 0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5140 30 1 -0.3634 0.8900 0.5138 31 1 1.6373 2.1389 -0.0005 32 1 4.0723 2.1956 -0.0094 33 1 6.2313 0.9739 -0.0001 34 1 9.0921 -0.3802 1.9384 35 1 7.2601 -2.2770 2.7167 36 1 8.5369 -3.2129 1.9032 37 1 8.4402 -3.9136 4.5035 38 1 10.3878 -4.7247 8.4932 39 1 6.2258 -3.2817 0.0013 40 1 3.7908 -3.3384 0.0000 41 1 1.6320 -2.1167 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663227933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:54 Heat of formation + Delta-G solvation = -92.640868 kcal Electronic energy + Delta-G solvation = -27159.307843 eV Core-core repulsion = 23129.811874 eV Total energy + Delta-G solvation = -4029.495970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44690 -40.42084 -38.42983 -37.97606 -37.03653 -36.37992 -35.44348 -34.05108 -33.79675 -32.78495 -30.59256 -28.95743 -28.02884 -25.98476 -24.51372 -23.55419 -23.04007 -21.49333 -20.70061 -20.50504 -19.31035 -18.66742 -18.14624 -17.67049 -17.29179 -17.11253 -16.69447 -16.37160 -16.14855 -15.83356 -15.68570 -15.05034 -14.99077 -14.77357 -14.48586 -14.35573 -14.27285 -14.19267 -14.07263 -13.89666 -13.45284 -13.29984 -13.20694 -13.15727 -12.95769 -12.84819 -12.54507 -12.41715 -12.21898 -11.97009 -11.89474 -11.77551 -11.54864 -11.10302 -10.77024 -10.50671 -10.28976 -9.71725 -9.00248 -8.42607 -6.05009 -0.85429 -0.61897 -0.22259 0.90758 1.32319 1.37504 1.46805 1.62915 1.84537 1.99192 2.23840 2.62083 2.81674 2.97986 3.13330 3.24723 3.54423 3.78735 3.80674 3.85490 4.00931 4.08342 4.17671 4.28681 4.31077 4.34908 4.41368 4.61528 4.66556 4.71792 4.82233 4.83939 4.87597 4.98988 5.17320 5.19344 5.27660 5.42717 5.51959 5.58007 5.74860 5.83781 5.94384 5.96310 6.53391 6.82312 7.32534 7.84678 8.74253 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.002905 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.607734 B = 9635.173116 C =11073.385401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.065 4.065 3 C -0.124 4.124 4 C -0.098 4.098 5 C -0.105 4.105 6 C 0.012 3.988 7 C -0.677 4.677 8 S 2.717 3.283 9 O -0.977 6.977 10 O -0.983 6.983 11 N -1.104 6.104 12 C 0.109 3.891 13 C 0.446 3.554 14 O -0.616 6.616 15 N -0.580 5.580 16 C -0.332 4.332 17 H 0.059 0.941 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.961 3.039 21 H -0.257 1.257 22 H -0.275 1.275 23 H -0.225 1.225 24 C -0.060 4.060 25 C -0.118 4.118 26 C -0.024 4.024 27 C -0.133 4.133 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.425 0.575 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.394 0.606 38 H 0.280 0.720 39 H 0.154 0.846 40 H 0.164 0.836 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.732 3.524 -18.640 31.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.116 4.116 5 C -0.106 4.106 6 C -0.008 4.008 7 C -0.766 4.766 8 S 2.810 3.190 9 O -0.967 6.967 10 O -0.974 6.974 11 N -0.867 5.867 12 C -0.021 4.021 13 C 0.233 3.767 14 O -0.501 6.501 15 N -0.221 5.221 16 C -0.461 4.461 17 H 0.077 0.923 18 C -0.212 4.212 19 N -0.570 5.570 20 Si 0.780 3.220 21 H -0.181 1.181 22 H -0.200 1.200 23 H -0.147 1.147 24 C -0.079 4.079 25 C -0.136 4.136 26 C -0.024 4.024 27 C -0.150 4.150 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.262 0.738 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.230 0.770 38 H 0.090 0.910 39 H 0.172 0.828 40 H 0.181 0.819 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.676 3.889 -19.121 31.459 hybrid contribution -0.169 -0.253 0.989 1.035 sum -24.845 3.636 -18.132 30.972 Atomic orbital electron populations 1.20952 0.88781 1.04173 1.03566 1.20173 0.98075 0.92798 0.95427 1.21177 0.94073 0.98953 1.00000 1.21411 0.95098 0.97289 0.97816 1.18409 0.93215 0.94634 1.04326 1.21181 0.94179 0.97446 0.87998 1.30280 1.25693 1.00430 1.20232 1.00946 0.74079 0.72598 0.71405 1.93544 1.81540 1.44892 1.76717 1.93551 1.82488 1.44795 1.76524 1.55154 1.72733 1.28360 1.30412 1.21106 1.00459 0.90504 0.90005 1.20617 0.86468 0.83575 0.86088 1.90541 1.42732 1.36822 1.80040 1.41934 1.38226 1.24007 1.17921 1.19016 1.19973 1.10608 0.96509 0.92336 1.26143 0.99583 1.01253 0.94182 1.69798 1.41137 1.36323 1.09731 0.85423 0.79161 0.77860 0.79516 1.18093 1.20044 1.14745 1.20722 0.95632 0.96198 0.95320 1.21407 0.93791 0.98318 1.00127 1.18574 0.94678 0.93103 0.96084 1.21239 0.91915 0.99642 1.02234 0.89726 0.90356 0.90221 0.83182 0.83381 0.83002 0.73758 0.85923 0.85732 0.76984 0.91010 0.82831 0.81892 0.83012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.98 71.23 0.71 -0.03 16 2 C -0.06 -0.78 5.84 -20.09 -0.12 -0.90 16 3 C -0.12 -1.56 9.58 22.05 0.21 -1.35 16 4 C -0.10 -1.54 9.77 22.33 0.22 -1.33 16 5 C -0.10 -2.10 5.74 -21.30 -0.12 -2.22 16 6 C 0.01 0.25 9.22 22.33 0.21 0.46 16 7 C -0.68 -15.38 5.91 22.04 0.13 -15.25 16 8 S 2.72 73.54 5.72 -56.49 -0.32 73.22 16 9 O -0.98 -30.11 16.70 -128.00 -2.14 -32.25 16 10 O -0.98 -31.08 17.21 -128.00 -2.20 -33.29 16 11 N -1.10 -32.27 5.93 -190.80 -1.13 -33.40 16 12 C 0.11 3.17 6.70 85.63 0.57 3.74 16 13 C 0.45 19.19 7.85 87.66 0.69 19.88 16 14 O -0.62 -32.54 15.30 -3.09 -0.05 -32.59 16 15 N -0.58 -26.07 5.09 -306.98 -1.56 -27.63 16 16 C -0.33 -18.83 10.16 84.04 0.85 -17.97 16 17 H 0.06 3.97 7.39 -2.91 -0.02 3.94 16 18 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 19 N -0.93 -54.81 13.96 21.66 0.30 -54.51 16 20 Si 0.96 36.99 27.74 68.60 1.90 38.89 16 21 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 22 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 23 H -0.22 -7.02 6.52 99.48 0.65 -6.37 16 24 C -0.06 -1.17 9.42 22.04 0.21 -0.96 16 25 C -0.12 -1.98 9.77 22.33 0.22 -1.76 16 26 C -0.02 -0.44 5.74 -21.30 -0.12 -0.57 16 27 C -0.13 -1.83 9.37 22.33 0.21 -1.62 16 28 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.08 0.38 8.07 -2.39 -0.02 0.36 16 30 H 0.08 0.36 8.08 -2.39 -0.02 0.34 16 31 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 32 H 0.15 1.73 8.06 -2.92 -0.02 1.70 16 33 H 0.15 2.93 7.54 -2.91 -0.02 2.90 16 34 H 0.42 13.52 7.70 -96.74 -0.75 12.78 16 35 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.12 3.00 7.75 -2.39 -0.02 2.98 16 37 H 0.39 14.25 5.76 -92.71 -0.53 13.71 16 38 H 0.28 15.08 8.31 -92.70 -0.77 14.31 16 39 H 0.15 2.52 7.57 -2.91 -0.02 2.50 16 40 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -82.92 365.63 -1.11 -84.03 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: -0.24 Total: 37.60 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 4.33 Total: -20.07 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -2.39 Total: -115.54 kcal Atomic # 8 Polarization: -93.74 SS G_CDS: -4.39 Total: -98.12 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 1.90 Total: 38.89 kcal Atomic # 16 Polarization: 73.54 SS G_CDS: -0.32 Total: 73.22 kcal Total: -82.92 -1.11 -84.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663227933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.612 kcal (2) G-P(sol) polarization free energy of solvation -82.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds