Wall clock time and date at job start Wed Apr 1 2020 04:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99829 * 2 1 4 4 H 1.48498 * 109.47198 * 240.00354 * 3 2 1 5 5 H 1.48504 * 109.46907 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46971 * 120.00342 * 3 2 1 7 7 C 1.37875 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99457 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00292 * 0.27332 * 7 2 1 10 10 O 1.42907 * 110.88641 * 59.02339 * 9 7 2 11 11 C 1.55154 * 111.00439 * 182.90311 * 9 7 2 12 12 C 1.54324 * 102.94111 * 153.57463 * 11 9 7 13 13 N 1.47025 * 107.27080 * 337.80768 * 12 11 9 14 14 C 1.34776 * 125.64318 * 178.99292 * 13 12 11 15 15 O 1.21591 * 119.99554 * 179.97438 * 14 13 12 16 16 N 1.34775 * 120.00672 * 359.97438 * 14 13 12 17 17 C 1.40180 * 120.00324 * 175.53427 * 16 14 13 18 18 C 1.38811 * 120.02933 * 34.65271 * 17 16 14 19 19 C 1.38344 * 119.99038 * 180.02562 * 18 17 16 20 20 F 1.35098 * 119.96582 * 179.97438 * 19 18 17 21 21 C 1.38625 * 120.06048 * 359.97438 * 19 18 17 22 22 F 1.35090 * 119.96723 * 179.97438 * 21 19 18 23 23 C 1.38594 * 120.06505 * 0.02562 * 21 19 18 24 24 F 1.35097 * 119.99969 * 180.02562 * 23 21 19 25 25 C 1.38508 * 120.00414 * 359.72200 * 23 21 19 26 26 F 1.35098 * 120.03221 * 180.29260 * 25 23 21 27 27 C 1.47460 * 108.72212 * 358.97371 * 13 12 11 28 28 H 0.96996 * 120.00188 * 359.97438 * 1 2 3 29 29 H 0.96698 * 113.99763 * 300.69880 * 10 9 7 30 30 H 1.08998 * 110.72097 * 271.93880 * 11 9 7 31 31 H 1.09000 * 110.71919 * 35.21232 * 11 9 7 32 32 H 1.08997 * 109.88212 * 97.22577 * 12 11 9 33 33 H 1.09003 * 109.88172 * 218.38867 * 12 11 9 34 34 H 0.96999 * 119.99304 * 355.53529 * 16 14 13 35 35 H 1.07995 * 120.00339 * 359.97438 * 18 17 16 36 36 H 1.08999 * 110.35034 * 265.24958 * 27 13 12 37 37 H 1.09003 * 110.40214 * 142.91465 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0073 10 8 0.4060 -2.5935 -1.1559 11 6 2.2255 -3.7042 0.0666 12 6 1.3644 -4.8054 0.7203 13 7 0.2769 -4.1348 1.4479 14 6 -0.7032 -4.7509 2.1380 15 8 -1.5543 -4.0925 2.7042 16 7 -0.7399 -6.0967 2.2007 17 6 -1.7028 -6.7355 2.9943 18 6 -2.9703 -6.1852 3.1264 19 6 -3.9198 -6.8160 3.9103 20 9 -5.1531 -6.2798 4.0389 21 6 -3.6068 -7.9978 4.5639 22 9 -4.5352 -8.6119 5.3294 23 6 -2.3420 -8.5493 4.4338 24 9 -2.0385 -9.7013 5.0709 25 6 -1.3910 -7.9228 3.6454 26 9 -0.1598 -8.4630 3.5134 27 6 0.4360 -2.6765 1.2980 28 1 -0.4850 0.8400 0.0004 29 1 -0.2527 -1.8883 -1.2185 30 1 2.5434 -4.0050 -0.9316 31 1 3.0865 -3.4662 0.6913 32 1 0.9493 -5.4569 -0.0487 33 1 1.9710 -5.3874 1.4143 34 1 -0.1000 -6.6232 1.6965 35 1 -3.2150 -5.2644 2.6179 36 1 0.9838 -2.2658 2.1461 37 1 -0.5378 -2.1955 1.2054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664131836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:10 Heat of formation + Delta-G solvation = -212.867522 kcal Electronic energy + Delta-G solvation = -30654.228214 eV Core-core repulsion = 25511.448909 eV Total energy + Delta-G solvation = -5142.779305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.15345 -49.74815 -49.16499 -48.63604 -40.70788 -38.87472 -37.44817 -34.78124 -34.41557 -32.29553 -30.81258 -30.46922 -29.29165 -27.93456 -25.40485 -24.07107 -23.50498 -22.62691 -20.25332 -19.87328 -19.19573 -18.72494 -18.35110 -17.76042 -17.34223 -17.19984 -16.85338 -16.58663 -16.09566 -15.95292 -15.56779 -15.41189 -15.17095 -15.12644 -14.81970 -14.74622 -14.66781 -14.48628 -13.86402 -13.53460 -13.22088 -12.99262 -12.72761 -12.37790 -12.25441 -12.19905 -11.76139 -11.62970 -11.11918 -10.96397 -10.77940 -10.59488 -10.49971 -10.31336 -10.02041 -9.52982 -9.19773 -8.79655 -8.66174 -8.52706 -7.98821 -6.38747 -4.48666 0.18735 0.25322 2.26257 2.55010 2.90994 3.16176 3.22742 3.23311 3.24455 3.45183 3.71580 3.83239 3.96517 4.10827 4.19025 4.46401 4.84743 4.88497 5.17173 5.21729 5.31659 5.44615 5.58433 5.66348 5.81475 5.87224 5.93461 6.32922 6.35269 6.49791 6.62545 6.68429 6.91875 7.13331 7.24503 7.63766 7.88331 8.02814 8.53390 8.57164 9.19993 9.29408 10.68535 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.020585 B = 0.002644 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.863713 B =10586.678067 C =11480.560901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.583 6.583 11 C -0.115 4.115 12 C 0.097 3.903 13 N -0.614 5.614 14 C 0.715 3.285 15 O -0.573 6.573 16 N -0.681 5.681 17 C 0.204 3.796 18 C -0.116 4.116 19 C 0.118 3.882 20 F -0.110 7.110 21 C 0.034 3.966 22 F -0.112 7.112 23 C 0.086 3.914 24 F -0.107 7.107 25 C 0.049 3.951 26 F -0.113 7.113 27 C 0.110 3.890 28 H 0.272 0.728 29 H 0.385 0.615 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.415 0.585 35 H 0.185 0.815 36 H 0.064 0.936 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 -15.188 5.202 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.392 6.392 11 C -0.153 4.153 12 C -0.026 4.026 13 N -0.349 5.349 14 C 0.418 3.582 15 O -0.450 6.450 16 N -0.329 5.329 17 C 0.104 3.896 18 C -0.137 4.137 19 C 0.096 3.904 20 F -0.088 7.088 21 C 0.012 3.988 22 F -0.090 7.090 23 C 0.064 3.936 24 F -0.086 7.086 25 C 0.025 3.975 26 F -0.092 7.092 27 C -0.011 4.011 28 H 0.083 0.917 29 H 0.236 0.764 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.252 0.748 35 H 0.202 0.798 36 H 0.082 0.918 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.507 -15.092 5.531 16.452 hybrid contribution 0.356 0.694 0.253 0.820 sum -3.151 -14.398 5.783 15.833 Atomic orbital electron populations 1.69622 1.06013 1.28268 1.49278 1.25080 0.95066 0.99855 0.93148 0.86432 0.79530 0.81936 0.78863 1.19956 1.21024 1.19969 1.21417 0.93690 0.89918 1.52814 0.91423 1.19612 0.86148 0.91752 0.81599 1.86088 1.51487 1.55183 1.46488 1.22606 0.97683 0.94648 1.00390 1.22100 0.88905 0.96665 0.94924 1.48033 1.25718 1.10171 1.50974 1.15432 0.82388 0.80076 0.80310 1.90913 1.39865 1.63616 1.50631 1.42697 1.34743 1.06595 1.48857 1.16849 0.89029 0.90639 0.93133 1.21324 0.89274 1.02916 1.00200 1.17041 0.82316 0.91681 0.99324 1.91599 1.38170 1.84895 1.94150 1.17111 0.86861 0.94692 1.00157 1.91570 1.63106 1.81749 1.72617 1.16751 0.92087 0.86219 0.98521 1.91588 1.93085 1.44614 1.79264 1.16928 0.81778 0.96189 1.02594 1.91556 1.38073 1.85154 1.94381 1.23373 1.02983 0.74337 1.00449 0.91746 0.76417 0.90425 0.90167 0.92085 0.92477 0.74781 0.79769 0.91810 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.51 10.69 55.43 0.59 -21.91 16 2 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 3 Si 0.91 19.41 29.54 -169.99 -5.02 14.39 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.54 -13.13 8.25 -34.44 -0.28 -13.41 16 8 H 0.07 1.61 7.78 -52.48 -0.41 1.20 16 9 C 0.25 5.53 0.88 -89.63 -0.08 5.45 16 10 O -0.58 -13.76 13.17 -35.23 -0.46 -14.23 16 11 C -0.12 -2.03 6.13 -24.90 -0.15 -2.19 16 12 C 0.10 1.46 6.16 -3.06 -0.02 1.44 16 13 N -0.61 -11.11 3.33 -176.20 -0.59 -11.69 16 14 C 0.72 12.43 8.34 -86.92 -0.72 11.70 16 15 O -0.57 -11.62 14.01 5.29 0.07 -11.54 16 16 N -0.68 -8.92 5.19 -14.16 -0.07 -8.99 16 17 C 0.20 2.50 6.31 -83.56 -0.53 1.97 16 18 C -0.12 -1.45 8.68 -39.33 -0.34 -1.80 16 19 C 0.12 1.38 7.30 -39.40 -0.29 1.10 16 20 F -0.11 -1.36 17.18 2.25 0.04 -1.32 16 21 C 0.03 0.39 7.31 -39.31 -0.29 0.10 16 22 F -0.11 -1.33 17.09 2.25 0.04 -1.29 16 23 C 0.09 0.96 7.31 -39.35 -0.29 0.67 16 24 F -0.11 -1.23 17.09 2.25 0.04 -1.19 16 25 C 0.05 0.55 7.31 -39.22 -0.29 0.26 16 26 F -0.11 -1.26 16.86 2.25 0.04 -1.22 16 27 C 0.11 2.39 5.51 -2.51 -0.01 2.38 16 28 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 29 H 0.38 9.46 7.24 45.56 0.33 9.79 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.08 1.33 8.03 -51.93 -0.42 0.92 16 32 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.41 4.41 7.64 -40.82 -0.31 4.10 16 35 H 0.19 2.63 6.19 -52.49 -0.32 2.31 16 36 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 37 H 0.09 2.17 7.48 -51.93 -0.39 1.78 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -26.26 335.34 -6.00 -32.25 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -2.34 Total: 12.34 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -3.39 Total: 9.36 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.07 Total: -42.60 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.39 Total: -25.77 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.15 Total: -5.02 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.26 -6.00 -32.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664131836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.616 kcal (2) G-P(sol) polarization free energy of solvation -26.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds