Wall clock time and date at job start Wed Apr 1 2020 04:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48497 * 109.47492 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47238 * 300.00376 * 3 2 1 6 6 H 1.48509 * 109.46872 * 60.00228 * 3 2 1 7 7 C 1.39933 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99924 * 196.79298 * 7 2 1 9 9 C 1.41405 * 120.00003 * 16.79320 * 7 2 1 10 10 C 1.40775 * 120.21176 * 25.16349 * 9 7 2 11 11 C 1.37642 * 119.88826 * 180.02562 * 10 9 7 12 12 C 1.38535 * 120.31974 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.42774 * 359.95664 * 12 11 10 14 14 N 1.39956 * 119.94776 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99747 * 145.78343 * 14 13 12 16 16 O 1.21580 * 120.00420 * 354.83480 * 15 14 13 17 17 N 1.34780 * 119.99729 * 174.83786 * 15 14 13 18 18 N 1.40095 * 120.00097 * 0.02562 * 17 15 14 19 19 C 1.38546 * 120.00212 * 180.02562 * 18 17 15 20 20 C 1.39589 * 120.47942 * 179.97438 * 19 18 17 21 21 C 1.38288 * 118.47724 * 180.02562 * 20 19 18 22 22 Cl 1.73605 * 120.36688 * 179.97438 * 21 20 19 23 23 N 1.32625 * 119.25911 * 359.75116 * 21 20 19 24 24 C 1.32457 * 120.91326 * 0.50744 * 23 21 20 25 25 N 1.38392 * 119.17366 * 179.76042 * 24 23 21 26 26 N 1.32467 * 121.65734 * 359.47710 * 24 23 21 27 27 C 1.38272 * 120.10720 * 0.29816 * 13 12 11 28 28 H 0.97001 * 119.99718 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.05694 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.84361 * 179.97438 * 11 10 9 31 31 H 1.08000 * 119.78601 * 179.97438 * 12 11 10 32 32 H 0.96996 * 119.99939 * 325.79060 * 14 13 12 33 33 H 0.97004 * 120.00101 * 179.97438 * 17 15 14 34 34 H 0.97008 * 120.00331 * 359.97438 * 18 17 15 35 35 H 1.07998 * 120.75752 * 359.97438 * 20 19 18 36 36 H 0.97003 * 119.99925 * 179.72072 * 25 24 23 37 37 H 0.96999 * 120.00130 * 359.45523 * 25 24 23 38 38 H 1.08000 * 120.16503 * 179.72701 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7024 1.3463 0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8837 2.3963 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0533 -1.2320 0.2697 9 6 1.3460 -2.4102 -0.3549 10 6 0.2107 -2.3731 -1.1864 11 6 -0.4287 -3.5435 -1.5267 12 6 0.0392 -4.7589 -1.0544 13 6 1.1612 -4.8110 -0.2314 14 7 1.6256 -6.0444 0.2396 15 6 2.9472 -6.2467 0.4090 16 8 3.7420 -5.3933 0.0650 17 7 3.3880 -7.3951 0.9599 18 7 2.4723 -8.3788 1.3558 19 6 2.9254 -9.5590 1.9225 20 6 2.0218 -10.5456 2.3211 21 6 2.5192 -11.7073 2.8825 22 17 1.4396 -12.9661 3.3961 23 7 3.8305 -11.8510 3.0201 24 6 4.6637 -10.8952 2.6371 25 7 6.0251 -11.0810 2.8020 26 7 4.2268 -9.7682 2.0951 27 6 1.8140 -3.6456 0.1258 28 1 -0.4850 0.8401 0.0004 29 1 -0.1580 -1.4280 -1.5567 30 1 -1.2999 -3.5142 -2.1643 31 1 -0.4694 -5.6720 -1.3265 32 1 0.9962 -6.7536 0.4439 33 1 4.3393 -7.5409 1.0815 34 1 1.5210 -8.2332 1.2338 35 1 0.9586 -10.4044 2.1946 36 1 6.6463 -10.3906 2.5219 37 1 6.3580 -11.9000 3.2011 38 1 2.6818 -3.6846 0.7676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677653917.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:34 Heat of formation + Delta-G solvation = 72.153321 kcal Electronic energy + Delta-G solvation = -26151.053235 eV Core-core repulsion = 22055.411979 eV Total energy + Delta-G solvation = -4095.641256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.16854 -41.55951 -39.27141 -38.16510 -37.86818 -36.28732 -35.68931 -34.87421 -34.25839 -32.19828 -31.73815 -30.29989 -29.56055 -27.24587 -24.98558 -24.65408 -23.81198 -22.82331 -21.74665 -20.45235 -20.20411 -19.39697 -18.91327 -17.82512 -17.34902 -16.87676 -16.75593 -16.72953 -16.47820 -16.42865 -16.28730 -16.17953 -15.88586 -15.47354 -14.99868 -14.68381 -14.21734 -13.93565 -13.53270 -13.46902 -13.04651 -12.92111 -12.79626 -12.49464 -12.17412 -12.11053 -12.00648 -11.67308 -11.61135 -11.38862 -11.28509 -11.02754 -10.87612 -10.44986 -9.66786 -9.37920 -8.99761 -8.71403 -8.58559 -6.35372 -0.03767 0.20355 0.36750 0.80235 0.94076 1.04338 1.37462 1.48470 1.52409 1.73249 1.98179 2.20409 2.22646 2.73703 2.75624 3.04561 3.69492 3.73949 3.90102 4.19543 4.36228 4.48490 4.64531 4.67224 4.96571 5.10763 5.12318 5.13287 5.22822 5.32329 5.55594 5.72519 5.81705 6.00299 6.09533 6.11748 6.12996 6.26456 6.32200 6.41112 6.69869 6.95308 6.97533 7.01900 7.31429 7.36796 8.34083 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.019838 B = 0.001971 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.079859 B =14200.462289 C =15068.053411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.038 3.962 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.089 3.911 10 C -0.196 4.196 11 C -0.090 4.090 12 C -0.246 4.246 13 C 0.174 3.826 14 N -0.663 5.663 15 C 0.708 3.292 16 O -0.595 6.595 17 N -0.515 5.515 18 N -0.492 5.492 19 C 0.486 3.514 20 C -0.313 4.313 21 C 0.284 3.716 22 Cl -0.003 7.003 23 N -0.618 5.618 24 C 0.614 3.386 25 N -0.800 5.800 26 N -0.638 5.638 27 C -0.237 4.237 28 H 0.289 0.711 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.136 0.864 32 H 0.414 0.586 33 H 0.445 0.555 34 H 0.448 0.552 35 H 0.184 0.816 36 H 0.424 0.576 37 H 0.426 0.574 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 -23.287 5.584 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.530 4.530 8 H 0.080 0.920 9 C 0.086 3.914 10 C -0.216 4.216 11 C -0.108 4.108 12 C -0.267 4.267 13 C 0.081 3.919 14 N -0.313 5.313 15 C 0.408 3.592 16 O -0.470 6.470 17 N -0.270 5.270 18 N -0.227 5.227 19 C 0.238 3.762 20 C -0.346 4.346 21 C 0.113 3.887 22 Cl 0.026 6.974 23 N -0.349 5.349 24 C 0.253 3.747 25 N -0.350 5.350 26 N -0.375 5.375 27 C -0.259 4.259 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.143 0.857 31 H 0.154 0.846 32 H 0.252 0.748 33 H 0.291 0.709 34 H 0.295 0.705 35 H 0.201 0.799 36 H 0.258 0.742 37 H 0.259 0.741 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.408 -22.587 5.436 23.481 hybrid contribution -0.305 0.479 0.260 0.624 sum 3.103 -22.108 5.697 23.040 Atomic orbital electron populations 1.69855 1.08620 1.30455 1.35741 1.26665 0.95602 1.04141 0.91289 0.85209 0.79112 0.76416 0.79253 1.19029 1.18351 1.18723 1.19749 0.97477 0.92696 1.43107 0.91986 1.17823 0.91979 0.92335 0.89277 1.21326 0.99942 0.97723 1.02655 1.20838 0.98911 0.92078 0.99020 1.20449 1.01434 0.98217 1.06617 1.17210 0.95666 0.82849 0.96200 1.42233 1.05276 1.15117 1.68664 1.15779 0.83323 0.81151 0.78943 1.91078 1.55472 1.43146 1.57258 1.44344 1.06578 1.10412 1.65624 1.43057 1.04904 1.09507 1.65208 1.17832 0.88413 0.84146 0.85791 1.21419 1.03129 0.94591 1.15418 1.21289 0.88451 0.88770 0.90202 1.98438 1.59323 1.51050 1.88585 1.67198 1.03341 1.33300 1.31040 1.18779 0.88004 0.82773 0.85100 1.41773 1.00206 1.25092 1.67893 1.67144 1.15450 1.25229 1.29651 1.20958 1.04658 0.92228 1.08019 0.90026 0.87814 0.85721 0.84593 0.74806 0.70853 0.70479 0.79908 0.74243 0.74082 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.22 10.94 21.82 0.24 -42.98 16 2 C 0.04 1.98 5.16 85.25 0.44 2.42 16 3 Si 0.98 39.81 29.59 68.60 2.03 41.84 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.50 -28.74 9.05 23.46 0.21 -28.53 16 8 H 0.06 3.60 7.90 -2.91 -0.02 3.58 16 9 C 0.09 5.01 5.57 -21.31 -0.12 4.89 16 10 C -0.20 -10.31 8.69 22.75 0.20 -10.11 16 11 C -0.09 -3.91 10.02 22.20 0.22 -3.69 16 12 C -0.25 -9.64 9.97 22.58 0.23 -9.41 16 13 C 0.17 7.41 6.25 38.09 0.24 7.65 16 14 N -0.66 -20.94 5.30 -317.33 -1.68 -22.62 16 15 C 0.71 24.15 8.40 179.05 1.50 25.66 16 16 O -0.60 -26.98 14.93 -3.97 -0.06 -27.04 16 17 N -0.51 -12.72 6.30 -184.75 -1.16 -13.88 16 18 N -0.49 -8.53 6.40 -55.13 -0.35 -8.88 16 19 C 0.49 8.78 7.63 133.17 1.02 9.80 16 20 C -0.31 -4.59 9.83 22.61 0.22 -4.37 16 21 C 0.28 4.95 7.32 84.59 0.62 5.57 16 22 Cl 0.00 -0.04 29.15 -2.72 -0.08 -0.12 16 23 N -0.62 -12.10 10.45 -189.08 -1.98 -14.08 16 24 C 0.61 11.54 8.67 261.52 2.27 13.80 16 25 N -0.80 -9.33 9.07 -59.80 -0.54 -9.87 16 26 N -0.64 -12.89 9.53 -195.60 -1.86 -14.75 16 27 C -0.24 -12.43 8.39 22.85 0.19 -12.24 16 28 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 29 H 0.10 5.67 6.17 -2.91 -0.02 5.65 16 30 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 32 H 0.41 8.74 6.76 -92.71 -0.63 8.12 16 33 H 0.44 11.04 8.08 -213.32 -1.72 9.32 16 34 H 0.45 5.25 6.73 -213.31 -1.44 3.82 16 35 H 0.18 1.48 8.06 -2.91 -0.02 1.45 16 36 H 0.42 3.78 8.94 -92.71 -0.83 2.95 16 37 H 0.43 3.35 8.94 -92.71 -0.83 2.52 16 38 H 0.08 4.74 6.48 -2.91 -0.02 4.72 16 Total: -1.00 -73.79 350.39 -2.43 -76.22 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -4.22 Total: 34.73 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 7.24 Total: 1.43 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -7.34 Total: -127.07 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.06 Total: -27.04 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.08 Total: -0.12 kcal Total: -73.79 -2.43 -76.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677653917.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.375 kcal (2) G-P(sol) polarization free energy of solvation -73.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds