Wall clock time and date at job start Wed Apr 1 2020 04:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99661 * 2 1 4 4 H 1.48499 * 109.46529 * 90.00657 * 3 2 1 5 5 H 1.48503 * 109.46811 * 210.00185 * 3 2 1 6 6 H 1.48499 * 109.47137 * 330.00834 * 3 2 1 7 7 C 1.38810 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99160 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00384 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99982 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47118 * 179.97438 * 10 9 7 12 12 H 1.09006 * 110.88913 * 305.70219 * 11 10 9 13 13 C 1.55157 * 111.00630 * 181.81863 * 11 10 9 14 14 C 1.54366 * 102.92431 * 206.45514 * 13 11 10 15 15 N 1.47021 * 107.28808 * 22.13717 * 14 13 11 16 16 C 1.34776 * 125.65189 * 181.13133 * 15 14 13 17 17 O 1.21632 * 120.00304 * 174.88514 * 16 15 14 18 18 C 1.47193 * 119.99533 * 354.87694 * 16 15 14 19 19 C 1.36003 * 123.45950 * 6.05953 * 18 16 15 20 20 S 1.70459 * 110.81316 * 179.85462 * 19 18 16 21 21 C 1.75510 * 92.44402 * 0.34568 * 20 19 18 22 22 C 1.32769 * 110.57520 * 359.80099 * 21 20 19 23 23 C 1.50703 * 123.45697 * 179.97438 * 22 21 20 24 24 F 1.39901 * 109.46924 * 0.02762 * 23 22 21 25 25 F 1.39898 * 109.47160 * 120.02565 * 23 22 21 26 26 F 1.39900 * 109.47095 * 240.02592 * 23 22 21 27 27 C 1.47428 * 108.70506 * 1.09471 * 15 14 13 28 28 H 0.97000 * 120.00670 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00238 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.47177 * 299.99401 * 10 9 7 31 31 H 1.09000 * 109.47398 * 60.00039 * 10 9 7 32 32 H 1.09003 * 110.71927 * 324.79252 * 13 11 10 33 33 H 1.09004 * 110.71466 * 88.05808 * 13 11 10 34 34 H 1.09003 * 109.84496 * 262.73433 * 14 13 11 35 35 H 1.08999 * 110.03011 * 141.64939 * 14 13 11 36 36 H 1.07996 * 124.59535 * 359.97245 * 19 18 16 37 37 H 1.07996 * 124.70933 * 179.80218 * 21 20 19 38 38 H 1.08996 * 110.36829 * 217.03491 * 27 15 14 39 39 H 1.09001 * 110.46238 * 94.74913 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5477 1.4403 -0.7001 6 1 1.4474 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3600 -4.7287 0.8274 13 6 1.8030 -6.1832 0.0461 14 6 0.7994 -7.1428 -0.6283 15 7 -0.0958 -6.3250 -1.4599 16 6 -1.1256 -6.7881 -2.1957 17 8 -1.8589 -6.0088 -2.7739 18 6 -1.3626 -8.2371 -2.2998 19 6 -0.6638 -9.1641 -1.5911 20 16 -1.2039 -10.7391 -1.9562 21 6 -2.3956 -10.1462 -3.1002 22 6 -2.3572 -8.8209 -3.1693 23 6 -3.2583 -8.0090 -4.0637 24 9 -4.1045 -8.8664 -4.7751 25 9 -4.0260 -7.1370 -3.2845 26 9 -2.4809 -7.2701 -4.9620 27 6 0.3191 -4.9142 -1.3549 28 1 -0.4851 0.8400 0.0004 29 1 0.3556 -2.3881 0.0002 30 1 2.6847 -3.7145 -0.8905 31 1 2.6848 -3.7145 0.8894 32 1 2.7328 -6.1372 -0.5209 33 1 1.9928 -6.4843 1.0764 34 1 0.2216 -7.6683 0.1321 35 1 1.3312 -7.8613 -1.2520 36 1 0.1251 -8.9334 -0.8905 37 1 -3.0670 -10.7725 -3.6689 38 1 -0.5536 -4.2612 -1.3544 39 1 0.9880 -4.6517 -2.1745 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714387670.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:23 Heat of formation + Delta-G solvation = -143.887349 kcal Electronic energy + Delta-G solvation = -28467.221646 eV Core-core repulsion = 23893.646722 eV Total energy + Delta-G solvation = -4573.574924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.11421 -48.67612 -48.55743 -41.48895 -39.19304 -38.10007 -36.50181 -34.12122 -32.38754 -31.55082 -29.92848 -28.12377 -27.10379 -25.98610 -24.51997 -23.29040 -22.04386 -21.32417 -20.90884 -19.47484 -19.44946 -19.22195 -18.66561 -18.30243 -17.40489 -17.19497 -16.59458 -16.31716 -15.85803 -15.55085 -15.49712 -15.32013 -15.18684 -15.02088 -14.76384 -14.75401 -14.70737 -14.57892 -14.31951 -14.16413 -13.96389 -13.79717 -13.41156 -13.26709 -13.10797 -12.78634 -12.74707 -12.28893 -12.18705 -12.11343 -11.84987 -11.63382 -11.56254 -11.10508 -10.93945 -10.39923 -9.85829 -9.53457 -9.00781 -7.95238 -5.24833 -0.43962 0.26825 0.34277 0.59970 1.46085 1.48664 1.57022 1.76869 1.81335 2.06650 2.55564 2.84493 3.08779 3.33371 3.39039 3.39781 3.55437 3.68388 3.72840 3.88088 4.18092 4.19187 4.23845 4.29247 4.41046 4.51567 4.59309 4.67223 4.73424 4.78459 4.84035 5.00938 5.04912 5.18678 5.24570 5.41308 5.49732 6.26193 6.39400 6.99032 7.32105 8.09083 8.29855 9.28487 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.002626 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.985081 B =10658.977616 C =12037.334408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.975 3.025 4 H -0.284 1.284 5 H -0.267 1.267 6 H -0.300 1.300 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.163 3.837 11 C -0.097 4.097 12 H 0.076 0.924 13 C -0.111 4.111 14 C 0.083 3.917 15 N -0.609 5.609 16 C 0.568 3.432 17 O -0.577 6.577 18 C -0.154 4.154 19 C -0.223 4.223 20 S 0.353 5.647 21 C -0.180 4.180 22 C -0.186 4.186 23 C 0.525 3.475 24 F -0.176 7.176 25 F -0.183 7.183 26 F -0.186 7.186 27 C 0.121 3.879 28 H 0.250 0.750 29 H 0.371 0.629 30 H 0.025 0.975 31 H 0.038 0.962 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.224 0.776 37 H 0.207 0.793 38 H 0.039 0.961 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 -33.309 -2.082 33.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.804 3.196 4 H -0.211 1.211 5 H -0.191 1.191 6 H -0.227 1.227 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.393 5.393 10 C 0.037 3.963 11 C -0.117 4.117 12 H 0.095 0.905 13 C -0.149 4.149 14 C -0.038 4.038 15 N -0.341 5.341 16 C 0.357 3.643 17 O -0.458 6.458 18 C -0.170 4.170 19 C -0.361 4.361 20 S 0.621 5.379 21 C -0.317 4.317 22 C -0.199 4.199 23 C 0.469 3.531 24 F -0.157 7.157 25 F -0.164 7.164 26 F -0.167 7.167 27 C -0.002 4.002 28 H 0.058 0.942 29 H 0.202 0.798 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.135 0.865 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.241 0.759 37 H 0.224 0.776 38 H 0.058 0.942 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.851 -34.288 -1.944 34.354 hybrid contribution -1.121 3.579 -0.998 3.881 sum -0.270 -30.709 -2.941 30.851 Atomic orbital electron populations 1.69844 1.06850 1.26027 1.59663 1.25640 0.96350 1.01417 1.03845 0.85109 0.77679 0.79280 0.77516 1.21118 1.19125 1.22653 1.19673 0.91645 0.85277 1.40917 0.90119 1.42660 1.05607 1.01537 1.89456 1.20784 0.93314 0.83664 0.98554 1.22425 0.97574 0.96366 0.95325 0.90530 1.22738 0.97808 0.90718 1.03655 1.22868 0.91823 0.94718 0.94413 1.48374 1.30209 1.09215 1.46316 1.17844 0.79698 0.88089 0.78693 1.90865 1.47351 1.59267 1.48268 1.19528 1.01183 0.92887 1.03366 1.27115 1.05241 0.99261 1.04458 1.82901 1.23669 1.00896 1.30443 1.25987 1.05203 0.96137 1.04356 1.19810 1.01798 0.94729 1.03587 1.17890 0.78796 0.77735 0.78713 1.93150 1.72767 1.69882 1.79893 1.93206 1.76889 1.71484 1.74847 1.93185 1.75059 1.78756 1.69713 1.22095 0.98029 0.81682 0.98404 0.94152 0.79791 0.95664 0.94380 0.88811 0.86510 0.88101 0.87482 0.75950 0.77582 0.94237 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.14 13.06 21.65 0.28 -61.85 16 2 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 3 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 7 C -0.24 -13.76 9.99 84.03 0.84 -12.92 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 9 N -0.75 -38.60 5.49 -343.46 -1.89 -40.49 16 10 C 0.16 6.11 5.71 86.38 0.49 6.61 16 11 C -0.10 -2.87 3.07 -9.40 -0.03 -2.90 16 12 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 13 C -0.11 -1.84 6.42 31.80 0.20 -1.63 16 14 C 0.08 1.24 4.93 86.74 0.43 1.67 16 15 N -0.61 -17.06 3.33 -815.82 -2.71 -19.78 16 16 C 0.57 18.57 7.79 86.60 0.67 19.24 16 17 O -0.58 -24.96 13.26 -4.13 -0.05 -25.01 16 18 C -0.15 -3.53 5.97 -19.87 -0.12 -3.65 16 19 C -0.22 -2.62 9.42 67.30 0.63 -1.98 16 20 S 0.35 1.94 23.02 -56.49 -1.30 0.64 16 21 C -0.18 -2.21 10.45 66.64 0.70 -1.52 16 22 C -0.19 -4.17 5.44 -19.46 -0.11 -4.28 16 23 C 0.53 15.30 2.79 71.24 0.20 15.50 16 24 F -0.18 -4.21 16.42 44.97 0.74 -3.47 16 25 F -0.18 -6.46 15.57 44.97 0.70 -5.76 16 26 F -0.19 -6.40 16.02 44.97 0.72 -5.68 16 27 C 0.12 4.21 6.26 86.86 0.54 4.75 16 28 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 29 H 0.37 20.88 7.63 -92.71 -0.71 20.17 16 30 H 0.03 0.95 8.03 -2.39 -0.02 0.93 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.39 8.04 -2.39 -0.02 1.37 16 33 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.10 0.99 6.85 -2.39 -0.02 0.98 16 35 H 0.11 0.95 6.80 -2.39 -0.02 0.93 16 36 H 0.22 1.31 3.71 -2.91 -0.01 1.30 16 37 H 0.21 1.42 7.65 -2.91 -0.02 1.40 16 38 H 0.04 1.72 7.99 -2.39 -0.02 1.70 16 39 H 0.06 2.22 7.95 -2.39 -0.02 2.20 16 Total: -1.00 -84.53 346.02 3.86 -80.67 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.42 Total: 16.88 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 4.93 Total: 14.60 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -4.32 Total: -122.11 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.05 Total: -25.01 kcal Atomic # 9 Polarization: -17.07 SS G_CDS: 2.16 Total: -14.91 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.30 Total: 0.64 kcal Total: -84.53 3.86 -80.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714387670.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.214 kcal (2) G-P(sol) polarization free energy of solvation -84.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds