Wall clock time and date at job start Wed Apr 1 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47313 * 2 1 4 4 C 1.52997 * 109.47202 * 240.00055 * 2 1 3 5 5 C 1.53000 * 109.47301 * 174.99906 * 4 2 1 6 6 C 1.53003 * 109.46848 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.46612 * 180.02562 * 6 5 4 8 8 C 1.36944 * 119.99853 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99791 * 0.02562 * 8 7 6 10 10 C 1.38808 * 119.99884 * 180.02562 * 8 7 6 11 11 N 1.31619 * 120.00266 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99992 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47400 * 89.99594 * 12 10 8 14 14 H 1.48500 * 109.46979 * 210.00122 * 12 10 8 15 15 H 1.48499 * 109.46734 * 329.99824 * 12 10 8 16 16 N 1.46498 * 109.46794 * 120.00087 * 2 1 3 17 17 C 1.34769 * 120.00282 * 274.99429 * 16 2 1 18 18 O 1.21620 * 120.00136 * 0.02562 * 17 16 2 19 19 C 1.47261 * 120.00203 * 179.97438 * 17 16 2 20 20 C 1.41444 * 126.44605 * 269.98228 * 19 17 16 21 21 Cl 1.73599 * 125.98932 * 359.97438 * 20 19 17 22 22 N 1.30495 * 108.01399 * 180.24695 * 20 19 17 23 23 N 1.39920 * 108.95608 * 359.64347 * 22 20 19 24 24 C 1.46505 * 125.73165 * 180.15499 * 23 22 20 25 25 C 1.34322 * 108.53594 * 0.36209 * 23 22 20 26 26 Cl 1.73597 * 126.31175 * 179.78983 * 25 23 22 27 27 H 1.08997 * 109.46760 * 300.00002 * 1 2 3 28 28 H 1.08998 * 109.46681 * 59.99810 * 1 2 3 29 29 H 1.08996 * 109.47426 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47166 * 295.00611 * 4 2 1 31 31 H 1.09005 * 109.46900 * 55.00157 * 4 2 1 32 32 H 1.08996 * 109.47268 * 300.00122 * 5 4 2 33 33 H 1.09001 * 109.46449 * 60.00301 * 5 4 2 34 34 H 1.08996 * 109.47435 * 300.00203 * 6 5 4 35 35 H 1.09001 * 109.47200 * 60.00944 * 6 5 4 36 36 H 0.96998 * 120.00169 * 0.02562 * 7 6 5 37 37 H 0.97006 * 120.00276 * 180.02562 * 11 10 8 38 38 H 0.97001 * 119.99698 * 95.00241 * 16 2 1 39 39 H 1.09004 * 109.47009 * 270.24160 * 24 23 22 40 40 H 1.08996 * 109.47521 * 30.24584 * 24 23 22 41 41 H 1.08995 * 109.47169 * 150.24863 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 6 4.0748 -1.3351 -2.5626 7 7 5.5349 -1.2322 -2.6240 8 6 6.2188 -1.8065 -3.6622 9 1 5.6816 -2.3350 -4.4360 10 6 7.6022 -1.7095 -3.7201 11 7 8.2568 -1.0651 -2.7774 12 14 8.5350 -2.4923 -5.1367 13 1 8.6682 -1.5117 -6.2437 14 1 9.8850 -2.9027 -4.6737 15 1 7.7932 -3.6851 -5.6186 16 7 2.0183 -0.6906 1.1962 17 6 2.1471 -0.0184 2.3571 18 8 1.8576 1.1616 2.4119 19 6 2.6374 -0.7127 3.5596 20 6 1.8482 -1.3829 4.5233 21 17 0.1190 -1.5338 4.4996 22 7 2.6475 -1.8628 5.4364 23 7 3.9666 -1.5359 5.1032 24 6 5.1585 -1.8966 5.8749 25 6 3.9560 -0.8319 3.9593 26 17 5.3421 -0.1899 3.1345 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7516 -1.7715 -1.2056 31 1 1.6054 -0.2616 -2.1370 32 1 3.8532 0.4370 -1.3573 33 1 3.9994 -1.0728 -0.4260 34 1 3.7865 -2.3853 -2.5186 35 1 3.6403 -0.8759 -3.4506 36 1 6.0173 -0.7573 -1.9293 37 1 9.2236 -0.9969 -2.8181 38 1 2.2490 -1.6318 1.1525 39 1 5.3701 -1.1141 6.6036 40 1 4.9839 -2.8390 6.3939 41 1 6.0085 -2.0049 5.2012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734254069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:21 Heat of formation + Delta-G solvation = 32.215702 kcal Electronic energy + Delta-G solvation = -25689.628664 eV Core-core repulsion = 21693.363077 eV Total energy + Delta-G solvation = -3996.265587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.92897 -39.58631 -37.44988 -37.17990 -36.69114 -34.80743 -33.82453 -32.57778 -31.44693 -30.37892 -29.31635 -27.55791 -25.65409 -23.73679 -22.81015 -21.84661 -21.07340 -20.75002 -20.48786 -18.41942 -17.03645 -16.95757 -16.57872 -16.19762 -15.61496 -15.29016 -14.69500 -14.58008 -14.30994 -14.03049 -13.77495 -13.62916 -13.40698 -13.26287 -12.97652 -12.87121 -12.62406 -12.28213 -12.17668 -12.07334 -11.93274 -11.83937 -11.29576 -11.15776 -11.07973 -10.85570 -10.78881 -10.45632 -10.38565 -10.08418 -9.99462 -9.76242 -9.67935 -9.17960 -9.08809 -8.85750 -6.90341 -5.75778 -3.03988 0.74646 0.88211 1.06516 1.65386 2.32761 2.40901 3.19220 3.43445 3.48446 3.50049 3.99601 4.56135 4.62281 4.62867 4.64311 4.71155 4.83648 4.93083 5.09348 5.19868 5.34656 5.47021 5.58630 5.60728 5.67998 5.82788 5.89833 5.99803 6.12069 6.15066 6.24405 6.38309 6.43844 6.49944 6.68448 6.89467 6.92763 7.43612 7.70547 8.13348 8.43518 9.54380 10.13822 10.48176 11.47259 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.011420 B = 0.002886 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.173360 B = 9700.592375 C =11414.226623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.734 5.734 8 C -0.238 4.238 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 N -0.707 5.707 17 C 0.600 3.400 18 O -0.523 6.523 19 C -0.249 4.249 20 C 0.160 3.840 21 Cl 0.030 6.970 22 N -0.257 5.257 23 N -0.338 5.338 24 C 0.089 3.911 25 C 0.168 3.832 26 Cl 0.042 6.958 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.016 0.984 35 H 0.017 0.983 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.402 0.598 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.669 -1.339 18.749 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.378 5.378 8 C -0.369 4.369 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.358 5.358 17 C 0.383 3.617 18 O -0.398 6.398 19 C -0.266 4.266 20 C -0.031 4.031 21 Cl 0.058 6.942 22 N -0.083 5.083 23 N -0.121 5.121 24 C -0.051 4.051 25 C 0.010 3.990 26 Cl 0.070 6.930 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.216 0.784 37 H 0.064 0.936 38 H 0.237 0.763 39 H 0.108 0.892 40 H 0.123 0.877 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.671 -1.222 19.700 24.010 hybrid contribution 0.943 -0.326 -1.230 1.583 sum -12.728 -1.548 18.470 22.485 Atomic orbital electron populations 1.22175 0.95265 1.02134 1.02505 1.21107 0.93761 0.97842 0.83560 0.89081 1.21854 0.96860 1.00845 0.96546 1.21737 0.93694 1.01461 0.99498 1.20649 0.86126 0.96440 0.94249 1.42380 1.00234 1.66236 1.28981 1.19248 0.89431 1.26991 1.01222 0.91233 1.24737 0.96443 1.01313 0.98633 1.69664 1.07124 1.47171 1.34381 0.86193 0.79361 0.78839 0.81839 1.21730 1.21803 1.20771 1.46052 1.66402 1.14179 1.09172 1.16882 0.77334 0.85824 0.81693 1.90808 1.49292 1.15044 1.84654 1.19658 0.90037 1.14259 1.02632 1.22364 0.88673 0.98428 0.93681 1.98432 1.01226 1.96622 1.97899 1.77313 0.85816 1.23774 1.21365 1.48301 1.06268 1.40185 1.17374 1.22258 0.82302 1.03784 0.96756 1.22047 0.90826 0.96914 0.89197 1.98524 1.37199 1.83031 1.74237 0.92180 0.91475 0.92425 0.91349 0.90150 0.91908 0.92050 0.96584 0.96491 0.78376 0.93594 0.76311 0.89213 0.87723 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 2 C 0.14 1.62 2.57 -67.93 -0.17 1.44 16 3 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 4 C -0.12 -1.43 4.75 -26.73 -0.13 -1.55 16 5 C -0.13 -1.96 5.22 -26.73 -0.14 -2.10 16 6 C 0.15 3.04 6.26 -4.04 -0.03 3.01 16 7 N -0.73 -18.81 5.60 -59.91 -0.34 -19.14 16 8 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 9 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 11 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 12 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 N -0.71 -8.26 4.53 -54.94 -0.25 -8.51 16 17 C 0.60 8.22 7.36 -12.60 -0.09 8.12 16 18 O -0.52 -8.81 16.77 5.26 0.09 -8.72 16 19 C -0.25 -3.16 5.89 -104.99 -0.62 -3.78 16 20 C 0.16 1.92 7.89 -16.90 -0.13 1.78 16 21 Cl 0.03 0.32 29.19 -51.86 -1.51 -1.20 16 22 N -0.26 -2.96 12.50 33.18 0.41 -2.55 16 23 N -0.34 -3.38 3.98 -64.32 -0.26 -3.63 16 24 C 0.09 0.49 11.28 59.85 0.67 1.16 16 25 C 0.17 1.94 7.53 -16.44 -0.12 1.82 16 26 Cl 0.04 0.48 28.56 -51.86 -1.48 -1.00 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.97 7.75 -51.93 -0.40 0.57 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 10.31 7.67 -40.82 -0.31 9.99 16 37 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 38 H 0.40 4.13 8.59 -40.82 -0.35 3.78 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.45 7.77 -51.93 -0.40 0.04 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -34.33 385.69 -8.11 -42.44 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.64 Total: 5.45 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -0.65 Total: 1.24 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: 0.30 Total: -61.45 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 17 Polarization: 0.80 SS G_CDS: -2.99 Total: -2.19 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.33 -8.11 -42.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734254069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.654 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds