Wall clock time and date at job start Wed Apr 1 2020 05:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99618 * 2 1 4 4 H 1.48500 * 109.47119 * 264.85273 * 3 2 1 5 5 H 1.48497 * 109.47288 * 24.85149 * 3 2 1 6 6 H 1.48504 * 109.47098 * 144.85597 * 3 2 1 7 7 C 1.37879 * 120.00462 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99510 * 4.83947 * 7 2 1 9 9 C 1.50691 * 120.00102 * 184.83938 * 7 2 1 10 10 H 1.09001 * 109.47767 * 54.73241 * 9 7 2 11 11 O 1.45209 * 109.47247 * 294.73128 * 9 7 2 12 12 C 1.34228 * 116.99904 * 150.00106 * 11 9 7 13 13 O 1.20825 * 120.00121 * 359.97438 * 12 11 9 14 14 C 1.50698 * 119.99652 * 180.02562 * 12 11 9 15 15 C 1.53002 * 109.47119 * 179.97438 * 14 12 11 16 16 N 1.46495 * 109.47502 * 179.97438 * 15 14 12 17 17 C 1.35795 * 119.81711 * 270.02758 * 16 15 14 18 18 N 1.29988 * 121.86444 * 179.42374 * 17 16 15 19 19 C 1.35022 * 121.70296 * 0.86302 * 18 17 16 20 20 S 1.75879 * 130.81957 * 179.10127 * 19 18 17 21 21 C 1.75350 * 92.15477 * 179.97438 * 20 19 18 22 22 C 1.32030 * 111.25520 * 359.97438 * 21 20 19 23 23 C 1.39195 * 119.55940 * 359.39592 * 19 18 17 24 24 C 1.34748 * 119.81407 * 89.99707 * 16 15 14 25 25 O 1.21888 * 120.64663 * 0.05167 * 24 16 15 26 26 C 1.52999 * 109.46992 * 174.73607 * 9 7 2 27 27 C 1.53003 * 117.49518 * 254.04522 * 26 9 7 28 28 C 1.53007 * 117.49913 * 185.38741 * 26 9 7 29 29 H 0.97000 * 120.00202 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.47577 * 60.00021 * 14 12 11 31 31 H 1.09005 * 109.47105 * 299.99689 * 14 12 11 32 32 H 1.09007 * 109.47074 * 59.99514 * 15 14 12 33 33 H 1.08997 * 109.47234 * 299.99957 * 15 14 12 34 34 H 1.07994 * 119.06352 * 359.96879 * 17 16 15 35 35 H 1.07998 * 124.36903 * 179.97438 * 21 20 19 36 36 H 1.07997 * 122.59711 * 179.97438 * 22 21 20 37 37 H 1.08998 * 115.55412 * 39.71547 * 26 9 7 38 38 H 1.08995 * 117.50116 * 359.97438 * 27 26 9 39 39 H 1.09000 * 117.49656 * 145.02584 * 27 26 9 40 40 H 1.08992 * 117.49858 * 214.97763 * 28 26 9 41 41 H 1.09001 * 117.49681 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6053 1.9837 -1.3944 5 1 1.3963 2.6817 0.5884 6 1 3.4880 1.4741 0.8060 7 6 2.0046 -1.1940 0.0005 8 1 1.4675 -2.1277 -0.0780 9 6 3.5075 -1.1962 0.1106 10 1 3.8077 -0.6389 0.9980 11 8 4.0802 -0.5727 -1.0692 12 6 5.2526 0.0623 -0.9145 13 8 5.7826 0.0965 0.1708 14 6 5.9073 0.7335 -2.0943 15 6 7.2216 1.3783 -1.6495 16 7 7.8584 2.0303 -2.7965 17 6 8.7254 1.3323 -3.5743 18 7 9.3043 1.8679 -4.6077 19 6 9.0878 3.1547 -4.9546 20 16 9.7478 4.1174 -6.2702 21 6 8.8327 5.5315 -5.7827 22 6 8.0962 5.2807 -4.7160 23 6 8.2143 3.9319 -4.1993 24 6 7.5799 3.3192 -3.0741 25 8 6.8028 3.9505 -2.3790 26 6 4.0087 -2.6376 0.2198 27 6 4.4965 -3.1140 1.5895 28 6 5.5037 -2.8489 0.4678 29 1 -0.4850 0.8400 -0.0004 30 1 5.2425 1.5009 -2.4907 31 1 6.1091 -0.0074 -2.8679 32 1 7.8866 0.6112 -1.2527 33 1 7.0194 2.1192 -0.8761 34 1 8.9333 0.3005 -3.3326 35 1 8.8671 6.4845 -6.2896 36 1 7.4599 6.0248 -4.2602 37 1 3.4960 -3.3628 -0.4121 38 1 4.4606 -2.4005 2.4127 39 1 4.3050 -4.1528 1.8585 40 1 5.9744 -3.7132 -0.0007 41 1 6.1302 -1.9609 0.5527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772395530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:05 Heat of formation + Delta-G solvation = -30.820539 kcal Electronic energy + Delta-G solvation = -27800.676509 eV Core-core repulsion = 23773.861270 eV Total energy + Delta-G solvation = -4026.815239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.01132 -39.89885 -37.92936 -37.36855 -36.74316 -35.23662 -34.63018 -32.79368 -31.49459 -29.82037 -28.65742 -26.28744 -24.78350 -23.81745 -23.12207 -21.82822 -21.50625 -20.47598 -19.46992 -19.42440 -18.15942 -17.66521 -17.19410 -16.62542 -16.47092 -16.18885 -16.10654 -15.31779 -15.13181 -14.83795 -14.33891 -14.14382 -13.96101 -13.90529 -13.64340 -13.28116 -13.16244 -13.11292 -12.57235 -12.30278 -12.00785 -11.68375 -11.51233 -11.44746 -11.26999 -10.96539 -10.85837 -10.55050 -10.44831 -10.31010 -10.27227 -9.92668 -9.80389 -9.53272 -9.46754 -9.08306 -8.92829 -8.85505 -8.44740 -6.38143 -4.45913 -0.09904 0.77818 1.35234 1.50086 1.78424 2.04486 2.76488 3.15822 3.23165 3.28193 3.34394 3.49565 3.72404 4.06673 4.24115 4.35642 4.46961 4.57234 4.60678 4.63345 4.81395 4.99475 5.17375 5.27828 5.34717 5.46766 5.54744 5.58637 5.61081 5.64779 5.79028 5.84769 5.91418 6.10902 6.17021 6.19825 6.42250 6.55024 6.67362 6.89782 7.24720 7.32243 7.50315 7.54406 8.19274 8.52797 8.67771 9.22065 10.70717 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.002825 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.896565 B = 9907.779654 C =11106.284101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.088 3.912 3 Si 0.875 3.125 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.259 1.259 7 C -0.508 4.508 8 H 0.090 0.910 9 C 0.205 3.795 10 H 0.053 0.947 11 O -0.350 6.350 12 C 0.455 3.545 13 O -0.524 6.524 14 C -0.143 4.143 15 C 0.106 3.894 16 N -0.531 5.531 17 C 0.392 3.608 18 N -0.509 5.509 19 C 0.079 3.921 20 S 0.189 5.811 21 C -0.231 4.231 22 C -0.063 4.063 23 C -0.236 4.236 24 C 0.554 3.446 25 O -0.512 6.512 26 C -0.139 4.139 27 C -0.169 4.169 28 C -0.201 4.201 29 H 0.272 0.728 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.215 0.785 35 H 0.177 0.823 36 H 0.152 0.848 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.853 5.057 -10.969 24.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.119 4.119 3 Si 0.701 3.299 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.183 1.183 7 C -0.543 4.543 8 H 0.108 0.892 9 C 0.154 3.846 10 H 0.071 0.929 11 O -0.267 6.267 12 C 0.298 3.702 13 O -0.415 6.415 14 C -0.182 4.182 15 C -0.016 4.016 16 N -0.252 5.252 17 C 0.102 3.898 18 N -0.231 5.231 19 C -0.153 4.153 20 S 0.451 5.549 21 C -0.366 4.366 22 C -0.092 4.092 23 C -0.254 4.254 24 C 0.348 3.652 25 O -0.388 6.388 26 C -0.158 4.158 27 C -0.206 4.206 28 C -0.238 4.238 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.231 0.769 35 H 0.194 0.806 36 H 0.170 0.830 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 21.827 5.063 -11.947 25.393 hybrid contribution -1.257 1.509 1.501 2.472 sum 20.570 6.573 -10.446 23.989 Atomic orbital electron populations 1.69882 1.06433 1.28048 1.46303 1.25087 0.94804 0.99669 0.92358 0.86903 0.80688 0.82712 0.79555 1.19469 1.21368 1.18335 1.20999 0.86664 0.95362 1.51311 0.89230 1.20858 0.93023 0.87137 0.83532 0.92919 1.87015 1.31947 1.61911 1.45817 1.23006 0.81475 0.76785 0.88952 1.90552 1.64307 1.58814 1.27872 1.21749 0.96810 1.01813 0.97837 1.21846 0.93997 0.99182 0.86577 1.46740 1.38150 1.12559 1.27727 1.25089 0.83009 0.97871 0.83791 1.67943 1.28335 1.10010 1.16793 1.24017 0.97809 0.94074 0.99444 1.84090 1.44524 1.00311 1.25953 1.25182 1.04938 1.03207 1.03281 1.20513 0.99232 0.94184 0.95259 1.20825 1.06387 0.97018 1.01134 1.16720 0.82600 0.80723 0.85137 1.90970 1.35170 1.61850 1.50767 1.22616 0.94791 0.99154 0.99192 1.22802 1.03989 1.01262 0.92594 1.23171 0.93373 1.03204 1.04027 0.91828 0.87592 0.87370 0.87066 0.86882 0.76901 0.80574 0.83025 0.88008 0.89013 0.89432 0.90007 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.66 13.96 55.43 0.77 -24.89 16 2 C 0.09 2.50 5.47 -17.82 -0.10 2.41 16 3 Si 0.87 22.24 25.56 -169.99 -4.34 17.90 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.60 6.42 56.52 0.36 -6.24 16 7 C -0.51 -13.94 9.35 -34.44 -0.32 -14.26 16 8 H 0.09 2.59 7.99 -52.48 -0.42 2.17 16 9 C 0.21 4.88 1.53 -27.89 -0.04 4.84 16 10 H 0.05 1.34 5.90 -51.93 -0.31 1.03 16 11 O -0.35 -7.86 8.18 -39.25 -0.32 -8.18 16 12 C 0.45 8.69 6.33 36.00 0.23 8.91 16 13 O -0.52 -10.60 12.93 -18.75 -0.24 -10.85 16 14 C -0.14 -2.03 6.14 -27.88 -0.17 -2.20 16 15 C 0.11 1.25 4.65 -4.04 -0.02 1.23 16 16 N -0.53 -5.99 2.59 -120.43 -0.31 -6.30 16 17 C 0.39 3.31 11.48 -90.11 -1.03 2.28 16 18 N -0.51 -5.27 10.42 -12.60 -0.13 -5.41 16 19 C 0.08 0.88 7.70 -15.79 -0.12 0.76 16 20 S 0.19 1.58 23.24 -107.50 -2.50 -0.92 16 21 C -0.23 -1.84 11.04 28.81 0.32 -1.53 16 22 C -0.06 -0.66 10.31 -38.86 -0.40 -1.06 16 23 C -0.24 -2.98 6.08 -105.07 -0.64 -3.62 16 24 C 0.55 7.96 7.51 -14.44 -0.11 7.85 16 25 O -0.51 -9.18 16.68 5.02 0.08 -9.10 16 26 C -0.14 -2.80 5.29 -90.62 -0.48 -3.28 16 27 C -0.17 -2.96 10.18 -26.69 -0.27 -3.23 16 28 C -0.20 -3.40 9.82 -26.69 -0.26 -3.66 16 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 31 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.11 0.96 7.97 -51.92 -0.41 0.55 16 33 H 0.11 1.62 7.39 -51.93 -0.38 1.24 16 34 H 0.21 0.77 8.02 -52.49 -0.42 0.34 16 35 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 38 H 0.09 1.65 8.08 -51.93 -0.42 1.23 16 39 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.10 1.83 5.58 -51.93 -0.29 1.54 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -34.44 363.13 -9.73 -44.17 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.79 Total: 2.66 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -3.42 Total: -4.56 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.33 Total: -36.60 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.48 Total: -28.12 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.34 Total: 17.90 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.50 Total: -0.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.44 -9.73 -44.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772395530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.352 kcal (2) G-P(sol) polarization free energy of solvation -34.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds