Wall clock time and date at job start Wed Apr 1 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99805 * 2 1 4 4 H 1.48498 * 109.47110 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47245 * 300.00457 * 3 2 1 6 6 H 1.48502 * 109.46830 * 60.00319 * 3 2 1 7 7 C 1.37874 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99720 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00284 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47315 * 175.52692 * 9 7 2 11 11 C 1.46901 * 111.00430 * 295.29071 * 10 9 7 12 12 C 1.53234 * 109.34409 * 187.25414 * 11 10 9 13 13 N 1.47089 * 108.51921 * 306.16887 * 12 11 10 14 14 C 1.34778 * 120.87917 * 231.18916 * 13 12 11 15 15 O 1.21666 * 120.00158 * 4.84000 * 14 13 12 16 16 C 1.46926 * 119.99815 * 184.84505 * 14 13 12 17 17 C 1.36568 * 126.77641 * 41.30360 * 16 14 13 18 18 N 1.35390 * 109.80213 * 179.77775 * 17 16 14 19 19 H 0.96998 * 124.78174 * 180.32224 * 18 17 16 20 20 C 1.37863 * 110.43469 * 0.38014 * 18 17 16 21 21 C 1.38849 * 134.11831 * 179.97438 * 20 18 17 22 22 N 1.31751 * 120.45653 * 179.68359 * 21 20 18 23 23 C 1.32322 * 122.51135 * 0.02562 * 22 21 20 24 24 Cl 1.73602 * 119.47393 * 179.97438 * 23 22 21 25 25 C 1.37912 * 121.04611 * 359.97438 * 23 22 21 26 26 C 1.39441 * 118.61085 * 0.04618 * 25 23 22 27 27 C 1.47074 * 118.23657 * 51.45597 * 13 12 11 28 28 C 1.46904 * 110.99816 * 59.58979 * 10 9 7 29 29 H 0.96992 * 120.00067 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.46405 * 55.52997 * 9 7 2 31 31 H 1.08992 * 109.46863 * 295.53169 * 9 7 2 32 32 H 1.08995 * 109.49147 * 67.28722 * 11 10 9 33 33 H 1.09006 * 109.51319 * 307.22428 * 11 10 9 34 34 H 1.08994 * 109.63071 * 186.45872 * 12 11 10 35 35 H 1.09003 * 109.63070 * 65.87327 * 12 11 10 36 36 H 1.07994 * 125.09718 * 0.04732 * 17 16 14 37 37 H 1.08001 * 119.77143 * 359.71161 * 21 20 18 38 38 H 1.07995 * 120.69403 * 180.02562 * 25 23 22 39 39 H 1.09002 * 109.63064 * 68.25191 * 27 13 12 40 40 H 1.08998 * 109.63112 * 188.83569 * 27 13 12 41 41 H 1.09005 * 109.49296 * 292.70647 * 28 10 9 42 42 H 1.08999 * 109.49486 * 52.78347 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2021 -3.6135 -0.1092 11 6 2.9035 -3.5833 -1.3996 12 6 3.7468 -4.8539 -1.5487 13 7 4.6180 -4.9775 -0.3701 14 6 5.9441 -5.1752 -0.5078 15 8 6.4489 -5.1658 -1.6147 16 6 6.7801 -5.4021 0.6790 17 6 6.4698 -6.1735 1.7624 18 7 7.4889 -6.1443 2.6532 19 1 7.4989 -6.6204 3.4983 20 6 8.5098 -5.3416 2.1906 21 6 9.7510 -4.9717 2.6910 22 7 10.5376 -4.1710 2.0011 23 6 10.1965 -3.6844 0.8188 24 17 11.2944 -2.6347 -0.0218 25 6 8.9828 -3.9979 0.2439 26 6 8.1145 -4.8418 0.9355 27 6 4.0028 -4.8856 0.9626 28 6 3.1502 -3.6077 1.0129 29 1 -0.4850 0.8400 -0.0004 30 1 0.5654 -2.5227 -0.8476 31 1 0.6863 -2.5925 0.9269 32 1 3.5528 -2.7088 -1.4401 33 1 2.1750 -3.5332 -2.2089 34 1 4.3568 -4.7849 -2.4493 35 1 3.0917 -5.7228 -1.6125 36 1 5.5512 -6.7274 1.8875 37 1 10.0741 -5.3434 3.6522 38 1 8.7104 -3.5978 -0.7215 39 1 3.3719 -5.7574 1.1356 40 1 4.7821 -4.8374 1.7232 41 1 3.7963 -2.7329 0.9387 42 1 2.6004 -3.5756 1.9535 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154229708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:16 Heat of formation + Delta-G solvation = 45.691964 kcal Electronic energy + Delta-G solvation = -27962.601192 eV Core-core repulsion = 23969.352829 eV Total energy + Delta-G solvation = -3993.248363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.15512 -39.74750 -38.56476 -37.42521 -36.59886 -34.48520 -32.93142 -32.37079 -31.16975 -30.24675 -29.86442 -28.09540 -25.52955 -24.35652 -23.60560 -23.15658 -22.76927 -21.83577 -20.19987 -19.28618 -18.26254 -17.38126 -16.88579 -16.41573 -16.28129 -15.75018 -15.46752 -15.29351 -14.88734 -14.83886 -14.48287 -14.45949 -13.83797 -13.72908 -13.57339 -13.48322 -13.01748 -12.62304 -12.41289 -12.21594 -11.89939 -11.63523 -11.42459 -11.19841 -11.10747 -11.04534 -10.72409 -10.64820 -10.45823 -10.30505 -10.10580 -9.96711 -9.79313 -9.67024 -9.03512 -8.51546 -8.49625 -8.25064 -7.31853 -6.10218 -4.19596 0.41237 0.90953 1.66326 1.73526 2.46327 2.90322 3.22522 3.22701 3.31587 3.35764 3.46429 4.03193 4.23942 4.35605 4.36108 4.42706 4.70802 4.80671 4.83975 5.02735 5.20214 5.26768 5.32547 5.41564 5.54976 5.59108 5.66292 5.76753 5.82543 5.92756 6.02813 6.06501 6.29705 6.34908 6.55291 6.68282 6.71525 6.81253 7.14913 7.43515 7.43959 7.53976 7.81524 7.91157 8.12519 8.19942 8.29116 8.90453 9.48418 10.95005 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.003140 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.741454 B = 8915.404267 C =10248.244604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.552 4.552 8 H 0.057 0.943 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.050 3.950 12 C 0.117 3.883 13 N -0.600 5.600 14 C 0.587 3.413 15 O -0.543 6.543 16 C -0.211 4.211 17 C 0.121 3.879 18 N -0.565 5.565 19 H 0.426 0.574 20 C 0.032 3.968 21 C 0.137 3.863 22 N -0.462 5.462 23 C 0.138 3.862 24 Cl -0.031 7.031 25 C -0.091 4.091 26 C -0.024 4.024 27 C 0.103 3.897 28 C 0.049 3.951 29 H 0.262 0.738 30 H 0.035 0.965 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.191 0.809 37 H 0.166 0.834 38 H 0.150 0.850 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.082 -15.199 7.151 22.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.591 4.591 8 H 0.075 0.925 9 C 0.062 3.938 10 N -0.265 5.265 11 C -0.080 4.080 12 C -0.005 4.005 13 N -0.333 5.333 14 C 0.375 3.625 15 O -0.421 6.421 16 C -0.222 4.222 17 C -0.013 4.013 18 N -0.167 5.167 19 H 0.265 0.735 20 C -0.077 4.077 21 C -0.031 4.031 22 N -0.172 5.172 23 C -0.020 4.020 24 Cl -0.003 7.003 25 C -0.113 4.113 26 C -0.035 4.035 27 C -0.020 4.020 28 C -0.080 4.080 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.207 0.793 37 H 0.183 0.817 38 H 0.168 0.832 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.840 -15.183 6.871 22.992 hybrid contribution 0.026 1.556 0.067 1.557 sum 15.866 -13.627 6.938 22.036 Atomic orbital electron populations 1.69941 1.05997 1.26838 1.50029 1.24942 0.94746 0.99159 0.94754 0.86618 0.80209 0.83949 0.77765 1.19843 1.20828 1.20879 1.21772 0.93325 0.92087 1.51909 0.92527 1.19763 0.90663 0.85336 0.97998 1.62507 1.16502 1.46988 1.00456 1.22245 0.96726 0.95288 0.93710 1.21865 0.91939 0.98911 0.87814 1.48056 1.06253 1.70603 1.08379 1.17174 0.81205 0.76676 0.87429 1.90784 1.72745 1.52177 1.26432 1.19945 0.95717 1.08628 0.97882 1.22376 0.92432 0.98563 0.87913 1.41413 1.13921 1.41262 1.20064 0.73512 1.19335 0.93104 0.98903 0.96311 1.21635 0.87099 0.95055 0.99295 1.66908 1.33818 1.09849 1.06650 1.21121 0.90806 0.97910 0.92125 1.98398 1.63605 1.63530 1.74734 1.21190 0.91406 0.97279 1.01385 1.18775 0.93660 0.97749 0.93337 1.22281 0.96492 0.99789 0.83434 1.22312 0.94703 0.94908 0.96116 0.92788 0.94641 0.95226 0.93854 0.90270 0.89306 0.91166 0.79255 0.81664 0.83204 0.90938 0.90161 0.93745 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.55 -14.66 7.76 -34.44 -0.27 -14.93 16 8 H 0.06 1.52 5.87 -52.48 -0.31 1.22 16 9 C 0.19 4.56 5.11 -4.98 -0.03 4.53 16 10 N -0.54 -10.58 4.83 -235.47 -1.14 -11.72 16 11 C 0.05 0.92 5.24 -3.70 -0.02 0.90 16 12 C 0.12 1.80 6.61 -3.60 -0.02 1.77 16 13 N -0.60 -8.75 3.00 -173.63 -0.52 -9.27 16 14 C 0.59 9.01 7.60 -12.74 -0.10 8.92 16 15 O -0.54 -10.15 16.56 5.22 0.09 -10.06 16 16 C -0.21 -2.59 5.34 -103.44 -0.55 -3.14 16 17 C 0.12 0.92 9.48 -16.58 -0.16 0.76 16 18 N -0.56 -3.39 5.98 -10.46 -0.06 -3.45 16 19 H 0.43 0.82 8.96 -40.82 -0.37 0.45 16 20 C 0.03 0.30 7.31 -83.97 -0.61 -0.31 16 21 C 0.14 1.24 11.23 -17.36 -0.20 1.05 16 22 N -0.46 -5.57 10.30 -10.26 -0.11 -5.68 16 23 C 0.14 1.78 7.27 -17.46 -0.13 1.66 16 24 Cl -0.03 -0.38 29.10 -51.86 -1.51 -1.89 16 25 C -0.09 -1.24 9.92 -39.25 -0.39 -1.63 16 26 C -0.02 -0.30 6.43 -104.96 -0.67 -0.98 16 27 C 0.10 1.29 5.62 -3.37 -0.02 1.28 16 28 C 0.05 0.84 5.17 -3.46 -0.02 0.82 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.04 0.93 8.07 -51.92 -0.42 0.51 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.92 7.09 -51.93 -0.37 0.55 16 33 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16 34 H 0.09 1.40 7.04 -51.93 -0.37 1.04 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.19 0.82 7.31 -52.49 -0.38 0.44 16 37 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.15 2.11 8.06 -52.49 -0.42 1.68 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.83 4.97 -51.93 -0.26 0.57 16 41 H 0.04 0.89 6.63 -51.93 -0.34 0.54 16 42 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -33.90 360.44 -10.28 -44.18 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.90 Total: -1.46 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -3.28 Total: 2.44 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -1.09 Total: -54.89 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.51 Total: -1.89 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.90 -10.28 -44.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154229708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.871 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds