Wall clock time and date at job start Wed Apr 1 2020 05:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99805 * 2 1 4 4 H 1.48498 * 109.47110 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47245 * 300.00457 * 3 2 1 6 6 H 1.48502 * 109.46830 * 60.00319 * 3 2 1 7 7 C 1.37874 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99720 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00284 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47315 * 175.52692 * 9 7 2 11 11 C 1.46901 * 111.00430 * 295.29071 * 10 9 7 12 12 C 1.53234 * 109.34409 * 187.25414 * 11 10 9 13 13 N 1.47089 * 108.51921 * 306.16887 * 12 11 10 14 14 C 1.34778 * 120.87917 * 231.18916 * 13 12 11 15 15 O 1.21666 * 120.00158 * 4.84000 * 14 13 12 16 16 C 1.46926 * 119.99815 * 184.84505 * 14 13 12 17 17 C 1.36568 * 126.77641 * 41.30360 * 16 14 13 18 18 N 1.35390 * 109.80213 * 179.77775 * 17 16 14 19 19 H 0.96998 * 124.78174 * 180.32224 * 18 17 16 20 20 C 1.37863 * 110.43469 * 0.38014 * 18 17 16 21 21 C 1.38849 * 134.11831 * 179.97438 * 20 18 17 22 22 N 1.31751 * 120.45653 * 179.68359 * 21 20 18 23 23 C 1.32322 * 122.51135 * 0.02562 * 22 21 20 24 24 Cl 1.73602 * 119.47393 * 179.97438 * 23 22 21 25 25 C 1.37912 * 121.04611 * 359.97438 * 23 22 21 26 26 C 1.39441 * 118.61085 * 0.04618 * 25 23 22 27 27 C 1.47074 * 118.23657 * 51.45597 * 13 12 11 28 28 C 1.46904 * 110.99816 * 59.58979 * 10 9 7 29 29 H 0.96992 * 120.00067 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.46405 * 55.52997 * 9 7 2 31 31 H 1.08992 * 109.46863 * 295.53169 * 9 7 2 32 32 H 1.08995 * 109.49147 * 67.28722 * 11 10 9 33 33 H 1.09006 * 109.51319 * 307.22428 * 11 10 9 34 34 H 1.08994 * 109.63071 * 186.45872 * 12 11 10 35 35 H 1.09003 * 109.63070 * 65.87327 * 12 11 10 36 36 H 1.07994 * 125.09718 * 0.04732 * 17 16 14 37 37 H 1.08001 * 119.77143 * 359.71161 * 21 20 18 38 38 H 1.07995 * 120.69403 * 180.02562 * 25 23 22 39 39 H 1.09002 * 109.63064 * 68.25191 * 27 13 12 40 40 H 1.08998 * 109.63112 * 188.83569 * 27 13 12 41 41 H 1.09005 * 109.49296 * 292.70647 * 28 10 9 42 42 H 1.08999 * 109.49486 * 52.78347 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2021 -3.6135 -0.1092 11 6 2.9035 -3.5833 -1.3996 12 6 3.7468 -4.8539 -1.5487 13 7 4.6180 -4.9775 -0.3701 14 6 5.9441 -5.1752 -0.5078 15 8 6.4489 -5.1658 -1.6147 16 6 6.7801 -5.4021 0.6790 17 6 6.4698 -6.1735 1.7624 18 7 7.4889 -6.1443 2.6532 19 1 7.4989 -6.6204 3.4983 20 6 8.5098 -5.3416 2.1906 21 6 9.7510 -4.9717 2.6910 22 7 10.5376 -4.1710 2.0011 23 6 10.1965 -3.6844 0.8188 24 17 11.2944 -2.6347 -0.0218 25 6 8.9828 -3.9979 0.2439 26 6 8.1145 -4.8418 0.9355 27 6 4.0028 -4.8856 0.9626 28 6 3.1502 -3.6077 1.0129 29 1 -0.4850 0.8400 -0.0004 30 1 0.5654 -2.5227 -0.8476 31 1 0.6863 -2.5925 0.9269 32 1 3.5528 -2.7088 -1.4401 33 1 2.1750 -3.5332 -2.2089 34 1 4.3568 -4.7849 -2.4493 35 1 3.0917 -5.7228 -1.6125 36 1 5.5512 -6.7274 1.8875 37 1 10.0741 -5.3434 3.6522 38 1 8.7104 -3.5978 -0.7215 39 1 3.3719 -5.7574 1.1356 40 1 4.7821 -4.8374 1.7232 41 1 3.7963 -2.7329 0.9387 42 1 2.6004 -3.5756 1.9535 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154229708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:15 Heat of formation + Delta-G solvation = 20.570718 kcal Electronic energy + Delta-G solvation = -27963.690531 eV Core-core repulsion = 23969.352829 eV Total energy + Delta-G solvation = -3994.337702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.92353 -40.93113 -39.41128 -38.84620 -37.51477 -36.00761 -34.36242 -33.71634 -32.35966 -31.11941 -30.83134 -29.69426 -27.23948 -25.23633 -24.83341 -24.47209 -23.65078 -23.26654 -21.49781 -20.25307 -19.34017 -18.44792 -18.18225 -17.84987 -17.22020 -16.78005 -16.71681 -16.45481 -16.14628 -15.98023 -15.88912 -15.51143 -15.32718 -15.04679 -14.67974 -14.56071 -14.35961 -13.76106 -13.65030 -13.54232 -13.23737 -12.99310 -12.92077 -12.56707 -12.51644 -12.46178 -12.35899 -12.19071 -11.95146 -11.82122 -11.62960 -11.33048 -11.06153 -10.86483 -10.63751 -9.81888 -9.73303 -9.11534 -9.03250 -8.19898 -6.38197 -0.38774 0.08279 0.76865 0.88905 1.29891 1.33425 1.43206 1.76856 1.88623 2.21296 2.32699 2.59065 3.05575 3.27318 3.32366 3.44807 3.60316 3.71599 3.87036 4.04095 4.07564 4.16533 4.24885 4.38366 4.41826 4.51248 4.54631 4.66298 4.78107 4.79825 4.91281 4.97173 5.06907 5.12469 5.19883 5.23937 5.31862 5.51975 5.54722 5.71821 5.99159 6.16217 6.38645 6.45122 6.46828 6.62895 6.82794 7.15935 7.33422 8.82372 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.003140 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.741454 B = 8915.404267 C =10248.244604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.556 4.556 8 H 0.047 0.953 9 C 0.201 3.799 10 N -0.530 5.530 11 C 0.054 3.946 12 C 0.128 3.872 13 N -0.603 5.603 14 C 0.586 3.414 15 O -0.591 6.591 16 C -0.264 4.264 17 C 0.168 3.832 18 N -0.532 5.532 19 H 0.453 0.547 20 C 0.035 3.965 21 C 0.156 3.844 22 N -0.486 5.486 23 C 0.130 3.870 24 Cl -0.038 7.038 25 C -0.122 4.122 26 C -0.050 4.050 27 C 0.115 3.885 28 C 0.046 3.954 29 H 0.266 0.734 30 H 0.009 0.991 31 H 0.015 0.985 32 H 0.006 0.994 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.237 0.763 37 H 0.214 0.786 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.009 0.991 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.590 -17.723 10.394 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.595 4.595 8 H 0.065 0.935 9 C 0.074 3.926 10 N -0.254 5.254 11 C -0.075 4.075 12 C 0.005 3.995 13 N -0.335 5.335 14 C 0.377 3.623 15 O -0.472 6.472 16 C -0.274 4.274 17 C 0.031 3.969 18 N -0.135 5.135 19 H 0.297 0.703 20 C -0.074 4.074 21 C -0.012 4.012 22 N -0.197 5.197 23 C -0.026 4.026 24 Cl -0.010 7.010 25 C -0.144 4.144 26 C -0.061 4.061 27 C -0.007 4.007 28 C -0.084 4.084 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.033 0.967 32 H 0.025 0.975 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.253 0.747 37 H 0.230 0.770 38 H 0.143 0.857 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.027 0.973 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.366 -17.727 10.170 26.182 hybrid contribution -0.152 2.274 -0.870 2.439 sum 16.214 -15.453 9.300 24.252 Atomic orbital electron populations 1.70030 1.07183 1.27778 1.51024 1.25663 0.95521 1.02294 0.94628 0.85682 0.78614 0.80312 0.78112 1.20237 1.20393 1.19816 1.21982 0.92970 0.93362 1.51223 0.93519 1.19433 0.91047 0.86202 0.95924 1.62462 1.16904 1.44246 1.01781 1.22208 0.96249 0.95845 0.93196 1.21672 0.91755 0.97756 0.88329 1.48136 1.06226 1.70388 1.08760 1.17634 0.81243 0.75518 0.87910 1.90750 1.73482 1.54335 1.28649 1.19743 0.95978 1.12639 0.99012 1.22928 0.93148 0.95240 0.85579 1.41407 1.12152 1.39458 1.20509 0.70318 1.19321 0.93878 0.99107 0.95119 1.22421 0.86165 0.92643 0.99943 1.66982 1.34882 1.11342 1.06482 1.21125 0.90551 0.98178 0.92717 1.98382 1.63699 1.63811 1.75089 1.21075 0.92669 0.99381 1.01250 1.19056 0.94073 0.98052 0.94916 1.22392 0.96898 0.98296 0.83109 1.22436 0.94195 0.96406 0.95317 0.92504 0.97265 0.96723 0.97534 0.90739 0.90218 0.88561 0.74722 0.76971 0.85687 0.87194 0.87140 0.97297 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.64 13.29 21.45 0.28 -53.36 16 2 C 0.02 1.06 5.46 84.65 0.46 1.52 16 3 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.56 -30.43 7.76 25.60 0.20 -30.23 16 8 H 0.05 2.61 5.87 -2.91 -0.02 2.59 16 9 C 0.20 10.02 5.11 85.56 0.44 10.45 16 10 N -0.53 -20.84 4.83 -898.88 -4.34 -25.18 16 11 C 0.05 2.07 5.24 86.38 0.45 2.53 16 12 C 0.13 3.87 6.61 86.35 0.57 4.44 16 13 N -0.60 -16.71 3.00 -821.47 -2.47 -19.18 16 14 C 0.59 17.72 7.60 86.52 0.66 18.38 16 15 O -0.59 -22.98 16.56 -4.24 -0.07 -23.05 16 16 C -0.26 -5.92 5.34 -19.10 -0.10 -6.02 16 17 C 0.17 1.66 9.48 83.75 0.79 2.45 16 18 N -0.53 -3.35 5.98 -186.99 -1.12 -4.46 16 19 H 0.45 -1.49 8.96 -92.71 -0.83 -2.32 16 20 C 0.04 0.54 7.31 38.96 0.28 0.83 16 21 C 0.16 2.29 11.23 84.85 0.95 3.24 16 22 N -0.49 -11.08 10.30 -186.37 -1.92 -13.00 16 23 C 0.13 3.46 7.27 84.54 0.61 4.08 16 24 Cl -0.04 -0.98 29.10 -2.72 -0.08 -1.06 16 25 C -0.12 -3.49 9.92 22.48 0.22 -3.26 16 26 C -0.05 -1.22 6.43 -20.08 -0.13 -1.35 16 27 C 0.11 2.49 5.62 86.51 0.49 2.97 16 28 C 0.05 1.52 5.17 86.54 0.45 1.97 16 29 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.01 0.50 8.07 -2.38 -0.02 0.48 16 31 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.01 0.29 7.09 -2.39 -0.02 0.27 16 33 H 0.07 2.85 8.06 -2.38 -0.02 2.83 16 34 H 0.08 2.59 7.04 -2.39 -0.02 2.58 16 35 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.24 0.20 7.31 -2.91 -0.02 0.17 16 37 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 39 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.11 1.74 4.97 -2.39 -0.01 1.73 16 41 H 0.01 0.35 6.63 -2.38 -0.02 0.34 16 42 H 0.09 2.71 8.11 -2.39 -0.02 2.69 16 Total: -1.00 -80.87 360.44 -1.07 -81.94 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: 0.26 Total: -1.07 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 6.35 Total: 12.01 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -9.56 Total: -115.18 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.07 Total: -23.05 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -80.87 -1.07 -81.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154229708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.512 kcal (2) G-P(sol) polarization free energy of solvation -80.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds