Wall clock time and date at job start Wed Apr 1 2020 04:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00114 * 2 1 4 4 H 1.48502 * 109.47152 * 270.00316 * 3 2 1 5 5 H 1.48498 * 109.46856 * 30.00298 * 3 2 1 6 6 H 1.48500 * 109.46955 * 149.99914 * 3 2 1 7 7 C 1.37873 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00008 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00112 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46935 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99972 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99384 * 0.02562 * 11 10 9 13 13 C 1.50692 * 120.00103 * 180.02562 * 11 10 9 14 14 O 1.45202 * 109.47325 * 179.97438 * 13 11 10 15 15 C 1.34226 * 117.00113 * 179.97438 * 14 13 11 16 16 O 1.20826 * 120.00217 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99580 * 179.97438 * 15 14 13 18 18 N 1.46505 * 109.46654 * 180.02562 * 17 15 14 19 19 C 1.35084 * 120.51271 * 270.01872 * 18 17 15 20 20 O 1.21294 * 120.13287 * 1.67943 * 19 18 17 21 21 C 1.50753 * 119.73126 * 181.65102 * 19 18 17 22 22 O 1.42999 * 109.63644 * 328.67448 * 21 19 18 23 23 C 1.35991 * 116.71311 * 46.39894 * 22 21 19 24 24 C 1.38393 * 120.67538 * 147.14313 * 23 22 21 25 25 C 1.38312 * 119.87128 * 180.38750 * 24 23 22 26 26 C 1.38277 * 120.26343 * 359.42596 * 25 24 23 27 27 C 1.38289 * 120.19314 * 0.57505 * 26 25 24 28 28 C 1.38493 * 119.81881 * 359.69480 * 27 26 25 29 29 H 0.97000 * 119.99866 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47423 * 60.00202 * 9 7 2 31 31 H 1.09002 * 109.47099 * 299.99923 * 9 7 2 32 32 H 0.97001 * 119.99936 * 359.97438 * 10 9 7 33 33 H 1.08998 * 109.47469 * 59.99499 * 13 11 10 34 34 H 1.09002 * 109.46911 * 299.99717 * 13 11 10 35 35 H 1.09007 * 109.47278 * 60.00562 * 17 15 14 36 36 H 1.09000 * 109.47439 * 300.00073 * 17 15 14 37 37 H 1.09000 * 109.44498 * 88.72855 * 21 19 18 38 38 H 1.09006 * 109.44644 * 208.65613 * 21 19 18 39 39 H 1.08002 * 120.05943 * 0.10118 * 24 23 22 40 40 H 1.08008 * 119.86580 * 179.71671 * 25 24 23 41 41 H 1.07997 * 119.90163 * 180.28092 * 26 25 24 42 42 H 1.08001 * 120.08759 * 179.67966 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0022 11 6 5.3250 -2.8216 -0.0024 12 8 6.1130 -1.8997 -0.0011 13 6 5.8273 -4.2423 -0.0041 14 8 7.2793 -4.2424 -0.0046 15 6 7.8886 -5.4384 -0.0055 16 8 7.2306 -6.4517 -0.0065 17 6 9.3936 -5.5172 -0.0066 18 7 9.8089 -6.9221 -0.0082 19 6 10.0038 -7.5810 1.1548 20 8 9.8062 -7.0210 2.2124 21 6 10.4672 -9.0154 1.1330 22 8 9.9594 -9.6667 -0.0345 23 6 10.0822 -8.9957 -1.2110 24 6 10.2791 -9.6807 -2.3972 25 6 10.4098 -8.9811 -3.5832 26 6 10.3326 -7.6005 -3.5900 27 6 10.1360 -6.9091 -2.4086 28 6 10.0100 -7.6036 -1.2170 29 1 -0.4850 0.8401 0.0004 30 1 3.8753 -0.6804 0.8888 31 1 3.8746 -0.6800 -0.8911 32 1 3.3695 -3.3125 -0.0021 33 1 5.4640 -4.7551 -0.8947 34 1 5.4638 -4.7573 0.8852 35 1 9.7840 -5.0235 0.8834 36 1 9.7827 -5.0227 -0.8966 37 1 11.5567 -9.0446 1.1199 38 1 10.1012 -9.5286 2.0223 39 1 10.3352 -10.7593 -2.3962 40 1 10.5680 -9.5156 -4.5083 41 1 10.4310 -7.0604 -4.5200 42 1 10.0812 -5.8305 -2.4152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024778710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:03 Heat of formation + Delta-G solvation = -139.670142 kcal Electronic energy + Delta-G solvation = -29518.232048 eV Core-core repulsion = 25043.943865 eV Total energy + Delta-G solvation = -4474.288183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.16185 -40.65135 -39.38544 -38.91263 -38.06417 -36.71935 -35.94394 -34.41303 -32.46171 -31.26548 -30.86263 -30.27294 -29.40501 -27.59656 -26.70275 -24.08981 -23.24802 -22.24735 -21.35241 -20.18211 -20.00114 -19.65466 -18.35302 -17.98603 -17.46988 -17.37767 -16.87849 -16.52818 -16.23566 -15.85486 -15.72694 -15.53103 -15.15252 -15.10214 -14.83928 -14.55386 -14.47909 -14.07879 -13.71900 -13.39343 -13.35144 -13.11580 -12.63293 -12.58158 -12.52092 -12.39352 -12.09357 -11.77416 -11.74055 -11.36143 -11.09475 -10.90497 -10.79084 -10.70664 -10.48950 -10.02253 -9.56876 -9.40268 -9.19658 -8.84098 -8.40255 -8.30770 -6.25990 -4.29283 0.57674 0.76375 1.53329 1.83033 1.89310 2.43225 2.76599 2.97619 3.19941 3.23694 3.30622 3.38343 3.43445 3.76894 4.07300 4.29029 4.29578 4.38627 4.44431 4.52667 4.58584 4.65595 4.78720 4.82974 4.97158 4.99433 5.07794 5.10887 5.11858 5.17489 5.40408 5.65993 5.75989 5.97194 6.11527 6.12091 6.30334 6.69797 6.78969 6.97982 7.05123 7.13718 7.28913 7.44525 8.01424 8.38160 8.64319 8.76527 9.32817 10.85750 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.001961 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.498202 B =14277.304969 C =14769.108590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.699 5.699 11 C 0.503 3.497 12 O -0.536 6.536 13 C 0.050 3.950 14 O -0.326 6.326 15 C 0.445 3.555 16 O -0.494 6.494 17 C 0.118 3.882 18 N -0.538 5.538 19 C 0.493 3.507 20 O -0.499 6.499 21 C 0.057 3.943 22 O -0.300 6.300 23 C 0.083 3.917 24 C -0.107 4.107 25 C -0.110 4.110 26 C -0.107 4.107 27 C -0.126 4.126 28 C 0.100 3.900 29 H 0.268 0.732 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.399 0.601 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.102 0.898 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.214 -21.098 -5.499 34.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.349 5.349 11 C 0.286 3.714 12 O -0.414 6.414 13 C -0.027 4.027 14 O -0.241 6.241 15 C 0.285 3.715 16 O -0.381 6.381 17 C -0.005 4.005 18 N -0.264 5.264 19 C 0.282 3.718 20 O -0.372 6.372 21 C -0.021 4.021 22 O -0.215 6.215 23 C 0.037 3.963 24 C -0.126 4.126 25 C -0.128 4.128 26 C -0.126 4.126 27 C -0.146 4.146 28 C 0.006 3.994 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.233 0.767 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.120 0.880 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 26.151 -20.415 -4.769 33.517 hybrid contribution -0.308 0.707 0.059 0.773 sum 25.843 -19.708 -4.710 32.840 Atomic orbital electron populations 1.69875 1.06213 1.27527 1.49093 1.24792 0.94813 0.99199 0.93783 0.86812 0.80578 0.83184 0.79095 1.19777 1.20814 1.18472 1.21061 0.88307 0.95356 1.53718 0.90122 1.19565 0.95396 0.77876 0.97092 1.46073 1.04815 1.11603 1.72410 1.19881 0.83754 0.89303 0.78467 1.90701 1.55325 1.45603 1.49753 1.22859 0.77394 0.97506 1.04958 1.86518 1.22194 1.31953 1.83399 1.23975 0.92227 0.81984 0.73311 1.90714 1.66563 1.36366 1.44453 1.21035 0.88563 0.82344 1.08577 1.45266 1.64441 1.11498 1.05164 1.21654 0.77268 0.89756 0.83140 1.90817 1.48415 1.68701 1.29300 1.23199 1.01173 0.88343 0.89367 1.86247 1.78214 1.43770 1.13230 1.18606 1.02688 0.87857 0.87128 1.20560 1.01454 1.00802 0.89819 1.21043 1.00109 0.94136 0.97547 1.21024 0.99641 0.94334 0.97581 1.20741 1.02900 1.00301 0.90706 1.18074 1.04192 0.90656 0.86454 0.92163 0.95385 0.95848 0.76674 0.88214 0.88228 0.84276 0.84849 0.88010 0.83456 0.84199 0.84699 0.84780 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.96 55.43 0.77 -25.44 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.17 27.47 -169.99 -4.67 16.51 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.55 -14.80 9.83 -34.44 -0.34 -15.14 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 9 C 0.22 5.38 4.50 -5.19 -0.02 5.35 16 10 N -0.70 -13.88 5.55 -61.47 -0.34 -14.22 16 11 C 0.50 9.57 7.91 -10.99 -0.09 9.48 16 12 O -0.54 -12.24 16.50 -14.11 -0.23 -12.47 16 13 C 0.05 0.75 5.94 36.00 0.21 0.96 16 14 O -0.33 -4.90 9.75 -45.89 -0.45 -5.34 16 15 C 0.44 5.98 8.03 36.01 0.29 6.27 16 16 O -0.49 -7.89 16.18 -18.75 -0.30 -8.19 16 17 C 0.12 1.14 5.79 -5.19 -0.03 1.11 16 18 N -0.54 -5.46 2.21 -114.49 -0.25 -5.72 16 19 C 0.49 5.28 7.67 -10.82 -0.08 5.20 16 20 O -0.50 -6.80 16.77 5.55 0.09 -6.71 16 21 C 0.06 0.41 7.17 36.03 0.26 0.67 16 22 O -0.30 -2.71 10.45 -19.71 -0.21 -2.92 16 23 C 0.08 0.74 6.44 -39.09 -0.25 0.49 16 24 C -0.11 -0.72 10.00 -39.50 -0.39 -1.12 16 25 C -0.11 -0.60 10.04 -39.54 -0.40 -1.00 16 26 C -0.11 -0.63 10.04 -39.55 -0.40 -1.03 16 27 C -0.13 -0.92 9.36 -39.47 -0.37 -1.29 16 28 C 0.10 0.92 6.39 -83.49 -0.53 0.38 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 31 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 32 H 0.40 6.88 8.32 -40.82 -0.34 6.54 16 33 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 34 H 0.10 1.35 8.13 -51.93 -0.42 0.92 16 35 H 0.14 1.24 7.50 -51.93 -0.39 0.85 16 36 H 0.13 0.83 5.96 -51.93 -0.31 0.52 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.15 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 40 H 0.14 0.40 8.06 -52.48 -0.42 -0.02 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.13 0.76 6.12 -52.49 -0.32 0.44 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -37.54 369.70 -6.92 -44.46 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.66 Total: 2.05 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: -2.24 Total: 12.43 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.18 Total: -45.38 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -1.10 Total: -35.63 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.54 -6.92 -44.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024778710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.207 kcal (2) G-P(sol) polarization free energy of solvation -37.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds