Wall clock time and date at job start Wed Apr 1 2020 04:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00114 * 2 1 4 4 H 1.48502 * 109.47152 * 270.00316 * 3 2 1 5 5 H 1.48498 * 109.46856 * 30.00298 * 3 2 1 6 6 H 1.48500 * 109.46955 * 149.99914 * 3 2 1 7 7 C 1.37873 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00008 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00112 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46935 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99972 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99384 * 0.02562 * 11 10 9 13 13 C 1.50692 * 120.00103 * 180.02562 * 11 10 9 14 14 O 1.45202 * 109.47325 * 179.97438 * 13 11 10 15 15 C 1.34226 * 117.00113 * 179.97438 * 14 13 11 16 16 O 1.20826 * 120.00217 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99580 * 179.97438 * 15 14 13 18 18 N 1.46505 * 109.46654 * 180.02562 * 17 15 14 19 19 C 1.35084 * 120.51271 * 270.01872 * 18 17 15 20 20 O 1.21294 * 120.13287 * 1.67943 * 19 18 17 21 21 C 1.50753 * 119.73126 * 181.65102 * 19 18 17 22 22 O 1.42999 * 109.63644 * 328.67448 * 21 19 18 23 23 C 1.35991 * 116.71311 * 46.39894 * 22 21 19 24 24 C 1.38393 * 120.67538 * 147.14313 * 23 22 21 25 25 C 1.38312 * 119.87128 * 180.38750 * 24 23 22 26 26 C 1.38277 * 120.26343 * 359.42596 * 25 24 23 27 27 C 1.38289 * 120.19314 * 0.57505 * 26 25 24 28 28 C 1.38493 * 119.81881 * 359.69480 * 27 26 25 29 29 H 0.97000 * 119.99866 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47423 * 60.00202 * 9 7 2 31 31 H 1.09002 * 109.47099 * 299.99923 * 9 7 2 32 32 H 0.97001 * 119.99936 * 359.97438 * 10 9 7 33 33 H 1.08998 * 109.47469 * 59.99499 * 13 11 10 34 34 H 1.09002 * 109.46911 * 299.99717 * 13 11 10 35 35 H 1.09007 * 109.47278 * 60.00562 * 17 15 14 36 36 H 1.09000 * 109.47439 * 300.00073 * 17 15 14 37 37 H 1.09000 * 109.44498 * 88.72855 * 21 19 18 38 38 H 1.09006 * 109.44644 * 208.65613 * 21 19 18 39 39 H 1.08002 * 120.05943 * 0.10118 * 24 23 22 40 40 H 1.08008 * 119.86580 * 179.71671 * 25 24 23 41 41 H 1.07997 * 119.90163 * 180.28092 * 26 25 24 42 42 H 1.08001 * 120.08759 * 179.67966 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0022 11 6 5.3250 -2.8216 -0.0024 12 8 6.1130 -1.8997 -0.0011 13 6 5.8273 -4.2423 -0.0041 14 8 7.2793 -4.2424 -0.0046 15 6 7.8886 -5.4384 -0.0055 16 8 7.2306 -6.4517 -0.0065 17 6 9.3936 -5.5172 -0.0066 18 7 9.8089 -6.9221 -0.0082 19 6 10.0038 -7.5810 1.1548 20 8 9.8062 -7.0210 2.2124 21 6 10.4672 -9.0154 1.1330 22 8 9.9594 -9.6667 -0.0345 23 6 10.0822 -8.9957 -1.2110 24 6 10.2791 -9.6807 -2.3972 25 6 10.4098 -8.9811 -3.5832 26 6 10.3326 -7.6005 -3.5900 27 6 10.1360 -6.9091 -2.4086 28 6 10.0100 -7.6036 -1.2170 29 1 -0.4850 0.8401 0.0004 30 1 3.8753 -0.6804 0.8888 31 1 3.8746 -0.6800 -0.8911 32 1 3.3695 -3.3125 -0.0021 33 1 5.4640 -4.7551 -0.8947 34 1 5.4638 -4.7573 0.8852 35 1 9.7840 -5.0235 0.8834 36 1 9.7827 -5.0227 -0.8966 37 1 11.5567 -9.0446 1.1199 38 1 10.1012 -9.5286 2.0223 39 1 10.3352 -10.7593 -2.3962 40 1 10.5680 -9.5156 -4.5083 41 1 10.4310 -7.0604 -4.5200 42 1 10.0812 -5.8305 -2.4152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024778710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:02 Heat of formation + Delta-G solvation = -166.074617 kcal Electronic energy + Delta-G solvation = -29519.377032 eV Core-core repulsion = 25043.943865 eV Total energy + Delta-G solvation = -4475.433167 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.85089 -41.73324 -40.50487 -40.03688 -38.66605 -37.79175 -36.75241 -36.24046 -34.49121 -31.92861 -31.61873 -30.94222 -30.73496 -28.96104 -27.65025 -24.74902 -24.27400 -23.68812 -22.33777 -21.78597 -20.64760 -20.27779 -19.51710 -19.23654 -18.56389 -18.21812 -18.02512 -17.86589 -17.21550 -16.89660 -16.78363 -16.46229 -16.39375 -16.11009 -15.91608 -15.56669 -15.19182 -15.18613 -14.86374 -14.70803 -14.40606 -14.23369 -13.97046 -13.89603 -13.72671 -13.26947 -13.10739 -13.01875 -12.72035 -12.33681 -12.24845 -12.19038 -12.05290 -11.94776 -11.69787 -11.60361 -11.20050 -11.03245 -10.93961 -10.08512 -9.70873 -9.00012 -8.41520 -6.49572 0.01695 0.27357 0.67088 0.85450 1.18485 1.32784 1.35160 1.44491 1.46672 1.48421 2.22347 2.26967 2.39133 2.70410 2.83756 2.93703 3.40054 3.54602 3.61259 3.70696 3.88950 3.94332 3.96080 3.98126 4.01964 4.14789 4.29504 4.36770 4.51245 4.62502 4.71670 4.89071 4.97962 5.03726 5.20964 5.21186 5.22463 5.35442 5.52070 5.65414 5.70137 6.02935 6.21828 6.32413 6.45095 6.49940 6.66742 7.07631 7.22766 8.73045 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.001961 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.498202 B =14277.304969 C =14769.108590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.232 3.768 10 N -0.697 5.697 11 C 0.507 3.493 12 O -0.574 6.574 13 C 0.058 3.942 14 O -0.338 6.338 15 C 0.447 3.553 16 O -0.523 6.523 17 C 0.118 3.882 18 N -0.539 5.539 19 C 0.484 3.516 20 O -0.541 6.541 21 C 0.059 3.941 22 O -0.314 6.314 23 C 0.062 3.938 24 C -0.114 4.114 25 C -0.103 4.103 26 C -0.109 4.109 27 C -0.133 4.133 28 C 0.073 3.927 29 H 0.273 0.727 30 H 0.017 0.983 31 H 0.019 0.981 32 H 0.412 0.588 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.145 0.855 36 H 0.169 0.831 37 H 0.132 0.868 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.185 -21.778 -7.041 36.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.109 3.891 10 N -0.348 5.348 11 C 0.293 3.707 12 O -0.454 6.454 13 C -0.019 4.019 14 O -0.253 6.253 15 C 0.290 3.710 16 O -0.411 6.411 17 C -0.005 4.005 18 N -0.265 5.265 19 C 0.274 3.726 20 O -0.417 6.417 21 C -0.019 4.019 22 O -0.229 6.229 23 C 0.016 3.984 24 C -0.132 4.132 25 C -0.121 4.121 26 C -0.127 4.127 27 C -0.153 4.153 28 C -0.020 4.020 29 H 0.082 0.918 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.249 0.751 33 H 0.142 0.858 34 H 0.133 0.867 35 H 0.163 0.837 36 H 0.186 0.814 37 H 0.150 0.850 38 H 0.179 0.821 39 H 0.173 0.827 40 H 0.181 0.819 41 H 0.177 0.823 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 28.131 -21.143 -6.346 35.758 hybrid contribution -0.915 0.805 0.455 1.301 sum 27.216 -20.338 -5.890 34.483 Atomic orbital electron populations 1.69981 1.07746 1.28702 1.50456 1.25618 0.95570 1.02785 0.93509 0.85840 0.79253 0.79136 0.79576 1.18755 1.19933 1.18297 1.21265 0.89810 0.94698 1.52962 0.92175 1.19191 0.93453 0.80159 0.96265 1.45874 1.05813 1.10465 1.72663 1.20450 0.82786 0.90745 0.76757 1.90680 1.56112 1.47326 1.51302 1.22731 0.77941 0.94281 1.06899 1.86522 1.22010 1.33102 1.83647 1.24715 0.93451 0.80931 0.71952 1.90698 1.67418 1.37046 1.45955 1.21287 0.85842 0.82936 1.10482 1.45353 1.63874 1.11621 1.05608 1.22336 0.76551 0.90930 0.82759 1.90786 1.50517 1.69821 1.30572 1.23394 1.02876 0.86218 0.89377 1.86214 1.78781 1.44126 1.13742 1.18955 1.03680 0.88109 0.87642 1.20880 1.01039 1.01739 0.89573 1.21445 0.98285 0.94253 0.98153 1.21397 0.98570 0.94757 0.98002 1.21025 1.02517 1.01144 0.90580 1.18330 1.06069 0.91018 0.86553 0.91787 0.96473 0.96314 0.75148 0.85788 0.86653 0.83733 0.81391 0.85042 0.82108 0.82723 0.81855 0.82344 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.96 21.45 0.30 -54.93 16 2 C 0.03 1.44 5.47 84.65 0.46 1.90 16 3 Si 0.94 43.42 27.47 68.60 1.88 45.31 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.26 -11.82 6.54 99.48 0.65 -11.17 16 7 C -0.55 -29.95 9.83 25.60 0.25 -29.70 16 8 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 9 C 0.23 11.17 4.50 85.63 0.38 11.56 16 10 N -0.70 -27.25 5.55 -466.77 -2.59 -29.84 16 11 C 0.51 18.84 7.91 87.65 0.69 19.54 16 12 O -0.57 -25.89 16.50 15.75 0.26 -25.63 16 13 C 0.06 1.65 5.94 71.23 0.42 2.08 16 14 O -0.34 -9.76 9.75 -45.03 -0.44 -10.20 16 15 C 0.45 11.62 8.03 71.24 0.57 12.19 16 16 O -0.52 -16.38 16.18 21.96 0.36 -16.02 16 17 C 0.12 2.14 5.79 85.63 0.50 2.64 16 18 N -0.54 -10.59 2.21 -634.34 -1.40 -11.99 16 19 C 0.48 10.32 7.67 87.63 0.67 10.99 16 20 O -0.54 -15.03 16.77 -3.07 -0.05 -15.08 16 21 C 0.06 0.80 7.17 71.25 0.51 1.31 16 22 O -0.31 -5.46 10.45 -93.45 -0.98 -6.43 16 23 C 0.06 1.03 6.44 22.59 0.15 1.18 16 24 C -0.11 -1.31 10.00 22.32 0.22 -1.09 16 25 C -0.10 -0.83 10.04 22.30 0.22 -0.60 16 26 C -0.11 -0.96 10.04 22.29 0.22 -0.74 16 27 C -0.13 -1.66 9.36 22.34 0.21 -1.45 16 28 C 0.07 1.25 6.39 38.14 0.24 1.50 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 31 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 32 H 0.41 13.93 8.32 -92.71 -0.77 13.16 16 33 H 0.12 2.94 8.13 -2.39 -0.02 2.92 16 34 H 0.12 2.94 8.13 -2.39 -0.02 2.92 16 35 H 0.15 2.50 7.50 -2.38 -0.02 2.48 16 36 H 0.17 1.76 5.96 -2.39 -0.01 1.74 16 37 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.16 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.16 0.33 8.06 -2.91 -0.02 0.31 16 41 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 42 H 0.15 1.30 6.12 -2.91 -0.02 1.28 16 Total: -1.00 -81.92 369.70 3.34 -78.58 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.27 Total: 14.93 kcal Atomic # 6 Polarization: 25.58 SS G_CDS: 5.74 Total: 31.32 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -3.69 Total: -96.76 kcal Atomic # 8 Polarization: -72.51 SS G_CDS: -0.85 Total: -73.37 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.88 Total: 45.31 kcal Total: -81.92 3.34 -78.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024778710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.498 kcal (2) G-P(sol) polarization free energy of solvation -81.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds