Wall clock time and date at job start Wed Apr 1 2020 04:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.34776 * 119.99798 * 179.97438 * 15 14 13 17 17 O 1.21587 * 120.00113 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99873 * 180.02562 * 16 15 14 19 19 C 1.46501 * 120.00053 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47107 * 179.97438 * 19 18 16 21 21 H 1.08998 * 109.46975 * 305.00510 * 20 19 18 22 22 O 1.42896 * 109.47030 * 65.00269 * 20 19 18 23 23 C 1.53005 * 109.46858 * 185.00118 * 20 19 18 24 24 F 1.39892 * 109.47171 * 60.00227 * 23 20 19 25 25 F 1.39902 * 109.46557 * 180.02562 * 23 20 19 26 26 F 1.39894 * 109.47007 * 299.99687 * 23 20 19 27 27 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 28 28 C 1.38101 * 120.07230 * 0.04164 * 27 13 12 29 29 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 32 32 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 33 33 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 34 34 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 35 35 H 0.97007 * 119.99977 * 359.97438 * 18 16 15 36 36 H 1.08999 * 109.47365 * 299.99853 * 19 18 16 37 37 H 1.09004 * 109.46894 * 60.00382 * 19 18 16 38 38 H 0.96699 * 114.00010 * 59.99698 * 22 20 19 39 39 H 1.07999 * 119.96698 * 180.02562 * 27 13 12 40 40 H 1.07992 * 120.03608 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3594 -8.7563 1.0334 17 8 5.7914 -9.3286 0.0515 18 7 5.5966 -9.2550 2.2628 19 6 6.3756 -10.4863 2.4161 20 6 6.4977 -10.8309 3.9018 21 1 6.9184 -9.9807 4.4386 22 8 5.2043 -11.1339 4.4283 23 6 7.4139 -12.0446 4.0701 24 9 8.6802 -11.7481 3.5546 25 9 7.5251 -12.3601 5.4285 26 9 6.8737 -13.1358 3.3811 27 6 4.2024 -4.5970 -0.2043 28 6 3.4573 -3.4394 -0.0951 29 1 -0.4850 0.8400 0.0004 30 1 0.3579 -4.7892 -0.2301 31 1 1.6954 -6.8451 -0.4339 32 1 3.8358 -7.8156 -1.0337 33 1 5.3321 -6.8566 -0.9342 34 1 4.2983 -7.1670 1.6758 35 1 5.2523 -8.7982 3.0463 36 1 5.8739 -11.3010 1.8938 37 1 7.3702 -10.3419 1.9940 38 1 4.7692 -11.8818 3.9967 39 1 5.2812 -4.5470 -0.1947 40 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076084233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:21 Heat of formation + Delta-G solvation = -235.637816 kcal Electronic energy + Delta-G solvation = -29057.042622 eV Core-core repulsion = 24036.736228 eV Total energy + Delta-G solvation = -5020.306394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.113 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.71820 -48.23516 -48.18203 -40.23530 -39.16408 -38.36564 -36.93124 -34.81299 -34.41367 -32.40641 -31.14063 -30.31015 -29.68978 -26.58822 -25.65334 -24.48210 -22.93181 -22.08667 -21.19344 -20.67038 -19.29186 -19.21412 -19.07765 -18.52621 -18.09785 -17.14586 -16.65167 -16.51436 -16.00812 -15.46105 -15.02079 -14.91524 -14.79901 -14.69804 -14.60944 -14.54283 -14.52036 -14.32287 -14.25818 -14.02308 -13.83560 -13.67281 -13.51898 -13.24873 -12.81547 -12.67565 -12.21171 -12.10047 -11.71117 -11.42708 -11.23955 -10.98521 -10.82189 -10.74046 -10.52355 -10.35561 -9.55597 -9.45965 -8.93687 -8.90166 -8.31842 -7.36662 -6.55482 -4.14497 1.78363 2.04723 2.09924 2.61235 3.01776 3.06910 3.07978 3.09798 3.11226 3.17461 3.25985 3.65999 3.88189 3.95022 4.17993 4.24585 4.52291 4.96678 4.98680 5.05111 5.13199 5.20951 5.40426 5.63209 5.78022 5.86236 6.02570 6.08984 6.31967 6.47603 6.51051 6.57043 6.71885 6.77920 6.93987 7.11879 7.24176 7.32175 7.68140 7.88607 7.89064 8.46601 8.89624 9.57398 10.61831 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.001599 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.250798 B =17508.518083 C =17807.855525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.161 3.839 11 C -0.196 4.196 12 C -0.053 4.053 13 C -0.216 4.216 14 C 0.198 3.802 15 N -0.734 5.734 16 C 0.703 3.297 17 O -0.594 6.594 18 N -0.744 5.744 19 C 0.107 3.893 20 C 0.061 3.939 21 H 0.151 0.849 22 O -0.526 6.526 23 C 0.427 3.573 24 F -0.175 7.175 25 F -0.173 7.173 26 F -0.180 7.180 27 C -0.049 4.049 28 C -0.238 4.238 29 H 0.272 0.728 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.399 0.601 35 H 0.402 0.598 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.391 0.609 39 H 0.108 0.892 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.611 -20.818 8.518 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.215 4.215 12 C -0.072 4.072 13 C -0.217 4.217 14 C 0.075 3.925 15 N -0.389 5.389 16 C 0.403 3.597 17 O -0.472 6.472 18 N -0.402 5.402 19 C -0.018 4.018 20 C -0.001 4.001 21 H 0.168 0.832 22 O -0.332 6.332 23 C 0.371 3.629 24 F -0.157 7.157 25 F -0.154 7.154 26 F -0.161 7.161 27 C -0.068 4.068 28 C -0.257 4.257 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.233 0.767 35 H 0.237 0.763 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.241 0.759 39 H 0.126 0.874 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.700 -20.636 7.980 25.511 hybrid contribution 0.275 0.587 0.451 0.790 sum 12.976 -20.048 8.431 25.325 Atomic orbital electron populations 1.70022 1.06011 1.28026 1.45221 1.25326 0.95871 0.98956 0.96310 0.85759 0.78725 0.79580 0.79265 1.19402 1.20200 1.19436 1.21309 0.91844 0.80713 1.53152 0.88950 1.83976 1.34523 1.11569 1.77426 1.19447 0.90331 0.88051 0.91583 1.20216 0.99686 0.90281 1.11336 1.20537 0.92765 0.96832 0.97049 1.19199 0.93546 0.93461 1.15543 1.19856 0.98453 0.92288 0.81894 1.45509 1.57061 1.25715 1.10608 1.15934 0.79481 0.81215 0.83050 1.90934 1.57031 1.61875 1.37403 1.44786 1.59787 1.27826 1.07811 1.21708 0.98711 0.88637 0.92790 1.23411 0.84638 0.94538 0.97562 0.83206 1.86728 1.27780 1.55704 1.62993 1.21344 0.81012 0.86093 0.74402 1.93231 1.42561 1.93087 1.86778 1.93239 1.96113 1.93810 1.32240 1.93209 1.85557 1.57820 1.79558 1.20646 0.98387 0.91662 0.96133 1.21161 0.93770 0.98973 1.11804 0.91794 0.86370 0.86939 0.91625 0.91659 0.76722 0.76268 0.89790 0.89207 0.75872 0.87378 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.38 13.67 55.48 0.76 -23.62 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.77 29.55 -169.99 -5.02 14.75 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.39 -10.56 9.49 30.89 0.29 -10.27 16 8 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 9 O -0.17 -4.71 9.76 0.05 0.00 -4.71 16 10 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 11 C -0.20 -3.84 9.99 -39.39 -0.39 -4.23 16 12 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 13 C -0.22 -3.30 5.25 -104.58 -0.55 -3.85 16 14 C 0.20 2.63 5.80 -5.19 -0.03 2.60 16 15 N -0.73 -8.42 5.55 -66.41 -0.37 -8.79 16 16 C 0.70 8.50 8.57 -86.92 -0.74 7.75 16 17 O -0.59 -9.54 16.34 5.29 0.09 -9.46 16 18 N -0.74 -5.93 5.51 -65.22 -0.36 -6.29 16 19 C 0.11 0.71 5.07 -4.04 -0.02 0.69 16 20 C 0.06 0.28 3.00 -26.73 -0.08 0.20 16 21 H 0.15 0.49 8.14 -51.93 -0.42 0.06 16 22 O -0.53 -2.56 13.23 -35.23 -0.47 -3.02 16 23 C 0.43 2.54 2.85 37.16 0.11 2.64 16 24 F -0.18 -1.22 16.71 2.25 0.04 -1.18 16 25 F -0.17 -1.25 17.26 2.25 0.04 -1.21 16 26 F -0.18 -1.16 16.51 2.25 0.04 -1.13 16 27 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 28 C -0.24 -4.79 9.17 -39.39 -0.36 -5.15 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 31 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.07 0.89 8.08 -51.93 -0.42 0.48 16 34 H 0.40 3.95 8.48 -40.82 -0.35 3.60 16 35 H 0.40 2.37 8.49 -40.82 -0.35 2.02 16 36 H 0.08 0.59 7.94 -51.93 -0.41 0.18 16 37 H 0.09 0.66 7.66 -51.93 -0.40 0.26 16 38 H 0.39 0.91 8.69 45.56 0.40 1.31 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.13 2.59 5.64 -52.49 -0.30 2.30 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -32.79 365.02 -6.00 -38.80 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -3.34 Total: 8.07 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -2.90 Total: -7.70 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.03 Total: -38.71 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.38 Total: -17.19 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.11 Total: -3.52 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.79 -6.00 -38.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076084233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.842 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds