Wall clock time and date at job start Wed Apr 1 2020 04:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.34776 * 119.99798 * 179.97438 * 15 14 13 17 17 O 1.21587 * 120.00113 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99873 * 180.02562 * 16 15 14 19 19 C 1.46501 * 120.00053 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47107 * 179.97438 * 19 18 16 21 21 H 1.08998 * 109.46975 * 305.00510 * 20 19 18 22 22 O 1.42896 * 109.47030 * 65.00269 * 20 19 18 23 23 C 1.53005 * 109.46858 * 185.00118 * 20 19 18 24 24 F 1.39892 * 109.47171 * 60.00227 * 23 20 19 25 25 F 1.39902 * 109.46557 * 180.02562 * 23 20 19 26 26 F 1.39894 * 109.47007 * 299.99687 * 23 20 19 27 27 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 28 28 C 1.38101 * 120.07230 * 0.04164 * 27 13 12 29 29 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 32 32 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 33 33 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 34 34 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 35 35 H 0.97007 * 119.99977 * 359.97438 * 18 16 15 36 36 H 1.08999 * 109.47365 * 299.99853 * 19 18 16 37 37 H 1.09004 * 109.46894 * 60.00382 * 19 18 16 38 38 H 0.96699 * 114.00010 * 59.99698 * 22 20 19 39 39 H 1.07999 * 119.96698 * 180.02562 * 27 13 12 40 40 H 1.07992 * 120.03608 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3594 -8.7563 1.0334 17 8 5.7914 -9.3286 0.0515 18 7 5.5966 -9.2550 2.2628 19 6 6.3756 -10.4863 2.4161 20 6 6.4977 -10.8309 3.9018 21 1 6.9184 -9.9807 4.4386 22 8 5.2043 -11.1339 4.4283 23 6 7.4139 -12.0446 4.0701 24 9 8.6802 -11.7481 3.5546 25 9 7.5251 -12.3601 5.4285 26 9 6.8737 -13.1358 3.3811 27 6 4.2024 -4.5970 -0.2043 28 6 3.4573 -3.4394 -0.0951 29 1 -0.4850 0.8400 0.0004 30 1 0.3579 -4.7892 -0.2301 31 1 1.6954 -6.8451 -0.4339 32 1 3.8358 -7.8156 -1.0337 33 1 5.3321 -6.8566 -0.9342 34 1 4.2983 -7.1670 1.6758 35 1 5.2523 -8.7982 3.0463 36 1 5.8739 -11.3010 1.8938 37 1 7.3702 -10.3419 1.9940 38 1 4.7692 -11.8818 3.9967 39 1 5.2812 -4.5470 -0.1947 40 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076084233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:21 Heat of formation + Delta-G solvation = -261.669633 kcal Electronic energy + Delta-G solvation = -29058.171446 eV Core-core repulsion = 24036.736228 eV Total energy + Delta-G solvation = -5021.435218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.21877 -48.73597 -48.70080 -41.20361 -40.69636 -38.95179 -38.42819 -35.69148 -35.43807 -34.26311 -31.96032 -31.78170 -30.81871 -27.77683 -27.01979 -25.67964 -23.62826 -23.41182 -22.24469 -21.96883 -19.94463 -19.79841 -19.72914 -19.69211 -19.16506 -18.81423 -17.50436 -17.13579 -16.67181 -16.51729 -16.36312 -16.00970 -15.91904 -15.57313 -15.53066 -15.38369 -15.25550 -15.20736 -15.11871 -14.87860 -14.83927 -14.78796 -14.37792 -14.32950 -14.27024 -13.82923 -13.57489 -13.18542 -13.00481 -12.62117 -12.51855 -12.36112 -12.22586 -12.12824 -11.70260 -11.41474 -11.19104 -10.79157 -10.42969 -9.82333 -9.76325 -9.00460 -8.47377 -6.15554 0.53481 0.59712 1.32179 1.36556 1.46591 1.52282 1.88706 2.14547 2.17936 2.61615 2.62357 2.78575 2.84389 3.14764 3.25026 3.46322 3.50669 3.52861 3.84356 3.90411 4.05769 4.19497 4.45225 4.49386 4.55376 4.58881 4.77623 4.83087 5.06185 5.15610 5.28614 5.31908 5.48419 5.54467 5.70734 5.77413 5.96823 6.02375 6.18338 6.27147 6.97385 7.06344 7.55814 7.76893 8.75121 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.001599 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.250798 B =17508.518083 C =17807.855525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.122 3.878 11 C -0.206 4.206 12 C -0.042 4.042 13 C -0.181 4.181 14 C 0.204 3.796 15 N -0.728 5.728 16 C 0.703 3.297 17 O -0.634 6.634 18 N -0.727 5.727 19 C 0.106 3.894 20 C 0.078 3.922 21 H 0.169 0.831 22 O -0.532 6.532 23 C 0.427 3.573 24 F -0.182 7.182 25 F -0.180 7.180 26 F -0.184 7.184 27 C -0.044 4.044 28 C -0.245 4.245 29 H 0.273 0.727 30 H 0.114 0.886 31 H 0.148 0.852 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.409 0.591 35 H 0.416 0.584 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.402 0.598 39 H 0.140 0.860 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.805 -22.526 9.149 28.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.136 6.136 10 C 0.071 3.929 11 C -0.225 4.225 12 C -0.061 4.061 13 C -0.182 4.182 14 C 0.080 3.920 15 N -0.384 5.384 16 C 0.403 3.597 17 O -0.516 6.516 18 N -0.385 5.385 19 C -0.019 4.019 20 C 0.016 3.984 21 H 0.186 0.814 22 O -0.340 6.340 23 C 0.372 3.628 24 F -0.163 7.163 25 F -0.161 7.161 26 F -0.166 7.166 27 C -0.063 4.063 28 C -0.264 4.264 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.165 0.835 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.245 0.755 35 H 0.253 0.747 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.254 0.746 39 H 0.158 0.842 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.921 -22.408 8.659 28.279 hybrid contribution -0.258 0.662 0.251 0.754 sum 14.663 -21.745 8.909 27.699 Atomic orbital electron populations 1.70170 1.08009 1.28905 1.48557 1.26582 0.96830 1.02768 0.95837 0.84661 0.77396 0.74337 0.79944 1.18254 1.19826 1.18046 1.21788 0.92565 0.81336 1.53256 0.87879 1.83947 1.36083 1.12675 1.80846 1.20011 0.91671 0.87945 0.93265 1.20453 1.00077 0.90458 1.11495 1.20888 0.93098 0.96952 0.95113 1.19486 0.93409 0.94069 1.11269 1.19723 0.98204 0.91047 0.82992 1.45213 1.57145 1.25773 1.10222 1.16006 0.79163 0.80975 0.83570 1.90919 1.58601 1.62972 1.39063 1.44605 1.58997 1.27899 1.06986 1.21760 0.98121 0.87841 0.94184 1.23295 0.84440 0.94355 0.96319 0.81412 1.86719 1.27691 1.56341 1.63261 1.21535 0.80939 0.86375 0.73926 1.93220 1.43154 1.93114 1.86830 1.93225 1.96149 1.93904 1.32833 1.93203 1.85547 1.58210 1.79595 1.20948 0.99838 0.90732 0.94747 1.21252 0.92982 1.00122 1.12032 0.91826 0.86754 0.83459 0.91096 0.91321 0.75535 0.74725 0.90080 0.89746 0.74615 0.84243 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.06 13.67 21.62 0.30 -54.77 16 2 C -0.02 -1.23 5.49 84.84 0.47 -0.76 16 3 Si 1.02 41.50 29.55 68.60 2.03 43.53 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.41 -23.19 9.49 67.92 0.64 -22.54 16 8 H 0.10 5.25 5.20 -2.91 -0.02 5.24 16 9 O -0.23 -13.25 9.76 -22.72 -0.22 -13.47 16 10 C 0.12 5.69 6.65 22.58 0.15 5.84 16 11 C -0.21 -8.03 9.99 22.39 0.22 -7.80 16 12 C -0.04 -1.24 9.69 22.25 0.22 -1.03 16 13 C -0.18 -4.90 5.25 -19.84 -0.10 -5.01 16 14 C 0.20 4.60 5.80 85.63 0.50 5.09 16 15 N -0.73 -13.91 5.55 -482.28 -2.68 -16.58 16 16 C 0.70 14.77 8.57 179.06 1.53 16.30 16 17 O -0.63 -18.79 16.34 -3.99 -0.07 -18.86 16 18 N -0.73 -9.30 5.51 -478.53 -2.64 -11.93 16 19 C 0.11 1.14 5.07 86.38 0.44 1.58 16 20 C 0.08 0.52 3.00 30.60 0.09 0.61 16 21 H 0.17 0.53 8.14 -2.39 -0.02 0.51 16 22 O -0.53 -3.69 13.23 -148.98 -1.97 -5.66 16 23 C 0.43 4.29 2.85 71.98 0.21 4.50 16 24 F -0.18 -2.24 16.71 44.97 0.75 -1.49 16 25 F -0.18 -2.29 17.26 44.97 0.78 -1.51 16 26 F -0.18 -2.09 16.51 44.97 0.74 -1.35 16 27 C -0.04 -1.34 9.69 22.25 0.22 -1.13 16 28 C -0.24 -9.78 9.17 22.39 0.21 -9.57 16 29 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 31 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 32 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 33 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 34 H 0.41 6.39 8.48 -92.71 -0.79 5.61 16 35 H 0.42 3.35 8.49 -92.70 -0.79 2.56 16 36 H 0.08 0.96 7.94 -2.39 -0.02 0.95 16 37 H 0.08 1.07 7.66 -2.38 -0.02 1.05 16 38 H 0.40 0.85 8.69 -74.06 -0.64 0.21 16 39 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.12 4.91 5.64 -2.91 -0.02 4.90 16 Total: -1.00 -75.46 365.02 0.74 -74.72 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -1.06 Total: 21.30 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 4.78 Total: -13.92 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -5.02 Total: -83.28 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -2.26 Total: -37.99 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 2.27 Total: -4.35 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -75.46 0.74 -74.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076084233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.946 kcal (2) G-P(sol) polarization free energy of solvation -75.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds