Wall clock time and date at job start Wed Apr 1 2020 05:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86805 * 119.99745 * 2 1 4 4 H 1.48502 * 109.46874 * 94.69811 * 3 2 1 5 5 H 1.48498 * 109.47069 * 214.70120 * 3 2 1 6 6 H 1.48501 * 109.47075 * 334.70053 * 3 2 1 7 7 C 1.40041 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99893 * 8.99049 * 7 2 1 9 9 C 1.46372 * 120.00304 * 188.99135 * 7 2 1 10 10 O 1.21691 * 119.99979 * 13.24807 * 9 7 2 11 11 N 1.34784 * 120.00278 * 193.24972 * 9 7 2 12 12 C 1.47074 * 120.87647 * 354.88733 * 11 9 7 13 13 C 1.53696 * 108.27743 * 128.75931 * 12 11 9 14 14 N 1.46894 * 109.25751 * 54.07725 * 13 12 11 15 15 C 1.46902 * 111.00097 * 172.61102 * 14 13 12 16 16 C 1.50693 * 109.46993 * 314.30136 * 15 14 13 17 17 N 1.30932 * 126.40390 * 90.00496 * 16 15 14 18 18 C 1.35388 * 105.57960 * 179.97438 * 17 16 15 19 19 C 1.47733 * 126.44811 * 180.02562 * 18 17 16 20 20 C 1.34862 * 125.27282 * 179.71751 * 19 18 17 21 21 C 1.37812 * 114.72311 * 179.78683 * 20 19 18 22 22 C 1.33720 * 115.07478 * 0.50155 * 21 20 19 23 23 S 1.75861 * 109.74221 * 359.72885 * 22 21 20 24 24 N 1.31041 * 107.10417 * 359.97438 * 18 17 16 25 25 O 1.21296 * 110.03779 * 359.73562 * 24 18 17 26 26 C 1.46900 * 111.27189 * 296.76250 * 14 13 12 27 27 C 1.47074 * 120.88239 * 175.17093 * 11 9 7 28 28 H 0.96994 * 120.00332 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.62963 * 248.52125 * 12 11 9 30 30 H 1.08996 * 109.63328 * 9.10465 * 12 11 9 31 31 H 1.09004 * 109.64383 * 294.07729 * 13 12 11 32 32 H 1.09001 * 109.44383 * 173.95941 * 13 12 11 33 33 H 1.08992 * 109.47146 * 74.30480 * 15 14 13 34 34 H 1.09002 * 109.46711 * 194.30192 * 15 14 13 35 35 H 1.08003 * 122.63291 * 359.96945 * 20 19 18 36 36 H 1.08003 * 122.46041 * 180.22570 * 21 20 19 37 37 H 1.07995 * 125.13249 * 179.69161 * 22 21 20 38 38 H 1.08998 * 109.48928 * 303.14251 * 26 14 13 39 39 H 1.09002 * 109.52091 * 183.07759 * 26 14 13 40 40 H 1.09006 * 109.62945 * 350.89063 * 27 11 9 41 41 H 1.08992 * 109.63297 * 111.27998 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5874 1.9891 1.3954 5 1 3.4850 1.4710 -0.7970 6 1 1.3919 2.6794 -0.5983 7 6 2.0070 -1.2127 0.0005 8 1 1.4770 -2.1425 -0.1452 9 6 3.4572 -1.2204 0.1986 10 8 4.0219 -0.2196 0.5993 11 7 4.1673 -2.3358 -0.0627 12 6 3.4942 -3.5879 -0.4401 13 6 4.1472 -4.1173 -1.7268 14 7 5.5977 -4.2293 -1.5233 15 6 6.2396 -4.8949 -2.6648 16 6 5.4431 -6.1155 -3.0474 17 7 4.4574 -6.1619 -3.9081 18 6 4.0515 -7.4533 -3.9268 19 6 2.9594 -8.0183 -4.7457 20 6 2.5779 -9.3118 -4.7495 21 6 1.5288 -9.6009 -5.5951 22 6 1.0568 -8.5598 -6.2890 23 16 1.9599 -7.1095 -5.8721 24 7 4.8104 -8.1082 -3.0827 25 8 5.6150 -7.3548 -2.5765 26 6 6.2036 -2.9150 -1.2714 27 6 5.6352 -2.3348 0.0281 28 1 -0.4850 0.8400 -0.0004 29 1 3.6076 -4.3200 0.3595 30 1 2.4360 -3.3958 -0.6172 31 1 3.9473 -3.4298 -2.5488 32 1 3.7364 -5.0984 -1.9650 33 1 6.2803 -4.2079 -3.5100 34 1 7.2514 -5.1927 -2.3897 35 1 3.0552 -10.0616 -4.1359 36 1 1.1209 -10.5960 -5.6936 37 1 0.2441 -8.6031 -6.9988 38 1 5.9750 -2.2444 -2.0997 39 1 7.2842 -3.0238 -1.1791 40 1 5.9932 -1.3138 0.1606 41 1 5.9503 -2.9459 0.8738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153523617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:51 Heat of formation + Delta-G solvation = 87.309655 kcal Electronic energy + Delta-G solvation = -27634.805686 eV Core-core repulsion = 23645.405708 eV Total energy + Delta-G solvation = -3989.399978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.75848 -39.26612 -38.22932 -37.31279 -35.96927 -34.32452 -32.86749 -32.63435 -30.84021 -29.89744 -28.59081 -26.73764 -25.45252 -24.88853 -23.62933 -23.40367 -22.13545 -20.94584 -19.26476 -18.99953 -18.58078 -18.36874 -16.96275 -16.77543 -16.19538 -15.99298 -15.48822 -15.22045 -14.98321 -14.63209 -14.40074 -14.08689 -13.85641 -13.70253 -13.55439 -13.11403 -12.91775 -12.70963 -12.46512 -12.31852 -12.24472 -11.95101 -11.88465 -11.68236 -11.39309 -11.10916 -11.04926 -11.03609 -10.80351 -10.75936 -10.51198 -10.36891 -9.46011 -9.04628 -8.91667 -8.82966 -8.54629 -7.93101 -7.56905 -6.64147 -4.86245 0.16112 0.98520 1.12941 1.62943 1.93015 2.51183 2.61503 3.15537 3.43057 3.47613 3.69800 3.73956 3.87573 4.13967 4.23428 4.54325 4.56068 4.69614 4.86895 4.98118 5.09259 5.13654 5.18836 5.27983 5.32199 5.41575 5.49701 5.59094 5.64588 5.66600 5.73403 5.83479 5.89056 6.00625 6.01825 6.25160 6.33855 6.49564 6.75561 6.89881 7.05820 7.58003 7.84859 7.87883 8.28475 8.68870 9.10283 10.00159 10.36552 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.002859 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.012850 B = 9790.673696 C =11470.950953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.102 3.898 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.265 1.265 6 H -0.322 1.322 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.554 3.446 10 O -0.616 6.616 11 N -0.635 5.635 12 C 0.128 3.872 13 C 0.039 3.961 14 N -0.531 5.531 15 C 0.142 3.858 16 C 0.203 3.797 17 N -0.471 5.471 18 C 0.239 3.761 19 C -0.134 4.134 20 C -0.092 4.092 21 C -0.141 4.141 22 C -0.210 4.210 23 S 0.195 5.805 24 N -0.369 5.369 25 O 0.093 5.907 26 C 0.046 3.954 27 C 0.125 3.875 28 H 0.282 0.718 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.172 0.828 38 H 0.044 0.956 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.912 -17.829 -12.682 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.116 4.116 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.190 1.190 6 H -0.254 1.254 7 C -0.569 4.569 8 H 0.108 0.892 9 C 0.364 3.636 10 O -0.509 6.509 11 N -0.369 5.369 12 C 0.003 3.997 13 C -0.090 4.090 14 N -0.258 5.258 15 C 0.013 3.987 16 C -0.018 4.018 17 N -0.205 5.205 18 C -0.031 4.031 19 C -0.253 4.253 20 C -0.127 4.127 21 C -0.171 4.171 22 C -0.348 4.348 23 S 0.460 5.540 24 N -0.075 5.075 25 O 0.032 5.968 26 C -0.082 4.082 27 C 0.000 4.000 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.189 0.811 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.647 -16.724 -12.666 22.329 hybrid contribution 0.187 -0.526 -0.226 0.602 sum 7.834 -17.250 -12.891 22.915 Atomic orbital electron populations 1.69558 1.07968 1.30040 1.38081 1.25768 0.94729 1.02075 0.89073 0.85213 0.77715 0.77355 0.79679 1.20432 1.19025 1.25366 1.20771 0.89148 0.95791 1.51181 0.89228 1.18315 0.88287 0.80255 0.76719 1.90198 1.72521 1.33487 1.54653 1.47755 1.04555 1.11021 1.73601 1.21658 0.98344 0.85898 0.93750 1.22767 0.86355 1.00655 0.99210 1.62264 1.04862 1.22425 1.36252 1.20710 0.96234 0.86692 0.95054 1.28491 0.93795 0.89204 0.90268 1.72162 1.11383 1.17085 1.19871 1.22674 0.97398 0.86337 0.96721 1.21302 1.01299 0.97203 1.05513 1.20340 0.97538 0.94741 1.00070 1.20022 0.98057 1.00606 0.98411 1.26096 1.05837 0.96507 1.06333 1.84634 1.25513 1.09185 1.34704 1.75031 1.04050 1.16448 1.11984 1.85309 1.43253 1.16922 1.51324 1.22581 0.98878 0.87496 0.99241 1.21299 0.82530 1.01407 0.94733 0.90771 0.92728 0.87902 0.93226 0.91157 0.89817 0.86664 0.83578 0.83539 0.81081 0.93773 0.89754 0.89042 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.40 13.92 55.55 0.77 -22.63 16 2 C 0.10 2.88 5.52 -17.37 -0.10 2.79 16 3 Si 0.97 25.37 25.88 -169.99 -4.40 20.97 16 4 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.26 -7.22 6.62 56.52 0.37 -6.85 16 6 H -0.32 -8.01 7.11 56.52 0.40 -7.60 16 7 C -0.53 -14.89 9.35 -35.64 -0.33 -15.23 16 8 H 0.09 2.49 6.02 -52.48 -0.32 2.17 16 9 C 0.55 14.58 7.32 -12.99 -0.10 14.48 16 10 O -0.62 -17.58 11.82 5.20 0.06 -17.52 16 11 N -0.63 -13.47 3.00 -173.85 -0.52 -13.99 16 12 C 0.13 2.36 6.54 -3.37 -0.02 2.34 16 13 C 0.04 0.60 5.16 -3.47 -0.02 0.59 16 14 N -0.53 -6.89 4.77 -235.47 -1.12 -8.02 16 15 C 0.14 1.41 5.90 -4.98 -0.03 1.38 16 16 C 0.20 2.45 6.26 -12.97 -0.08 2.37 16 17 N -0.47 -6.45 10.64 -9.88 -0.11 -6.56 16 18 C 0.24 3.26 8.02 -156.04 -1.25 2.01 16 19 C -0.13 -1.61 6.44 -36.90 -0.24 -1.85 16 20 C -0.09 -0.92 10.05 -40.94 -0.41 -1.34 16 21 C -0.14 -1.13 10.16 -41.32 -0.42 -1.55 16 22 C -0.21 -1.65 11.23 29.15 0.33 -1.33 16 23 S 0.19 2.02 23.32 -107.50 -2.51 -0.49 16 24 N -0.37 -5.04 12.16 30.99 0.38 -4.66 16 25 O 0.09 1.18 11.29 18.00 0.20 1.38 16 26 C 0.05 0.61 5.58 -3.70 -0.02 0.59 16 27 C 0.12 2.14 6.58 -3.60 -0.02 2.12 16 28 H 0.28 7.35 8.29 -40.82 -0.34 7.01 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.10 2.08 5.41 -51.93 -0.28 1.80 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.09 5.88 -51.93 -0.31 0.78 16 33 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.15 0.80 8.06 -52.48 -0.42 0.37 16 37 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.83 8.11 -51.93 -0.42 0.40 16 40 H 0.09 1.71 7.09 -51.93 -0.37 1.34 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -33.47 355.51 -9.25 -42.72 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -4.66 Total: -3.94 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -2.71 Total: 7.36 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.60 Total: -55.85 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.26 Total: -16.14 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -4.40 Total: 20.97 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.51 Total: -0.49 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.47 -9.25 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153523617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.034 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds