Wall clock time and date at job start Wed Apr 1 2020 05:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86805 * 119.99745 * 2 1 4 4 H 1.48502 * 109.46874 * 94.69811 * 3 2 1 5 5 H 1.48498 * 109.47069 * 214.70120 * 3 2 1 6 6 H 1.48501 * 109.47075 * 334.70053 * 3 2 1 7 7 C 1.40041 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99893 * 8.99049 * 7 2 1 9 9 C 1.46372 * 120.00304 * 188.99135 * 7 2 1 10 10 O 1.21691 * 119.99979 * 13.24807 * 9 7 2 11 11 N 1.34784 * 120.00278 * 193.24972 * 9 7 2 12 12 C 1.47074 * 120.87647 * 354.88733 * 11 9 7 13 13 C 1.53696 * 108.27743 * 128.75931 * 12 11 9 14 14 N 1.46894 * 109.25751 * 54.07725 * 13 12 11 15 15 C 1.46902 * 111.00097 * 172.61102 * 14 13 12 16 16 C 1.50693 * 109.46993 * 314.30136 * 15 14 13 17 17 N 1.30932 * 126.40390 * 90.00496 * 16 15 14 18 18 C 1.35388 * 105.57960 * 179.97438 * 17 16 15 19 19 C 1.47733 * 126.44811 * 180.02562 * 18 17 16 20 20 C 1.34862 * 125.27282 * 179.71751 * 19 18 17 21 21 C 1.37812 * 114.72311 * 179.78683 * 20 19 18 22 22 C 1.33720 * 115.07478 * 0.50155 * 21 20 19 23 23 S 1.75861 * 109.74221 * 359.72885 * 22 21 20 24 24 N 1.31041 * 107.10417 * 359.97438 * 18 17 16 25 25 O 1.21296 * 110.03779 * 359.73562 * 24 18 17 26 26 C 1.46900 * 111.27189 * 296.76250 * 14 13 12 27 27 C 1.47074 * 120.88239 * 175.17093 * 11 9 7 28 28 H 0.96994 * 120.00332 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.62963 * 248.52125 * 12 11 9 30 30 H 1.08996 * 109.63328 * 9.10465 * 12 11 9 31 31 H 1.09004 * 109.64383 * 294.07729 * 13 12 11 32 32 H 1.09001 * 109.44383 * 173.95941 * 13 12 11 33 33 H 1.08992 * 109.47146 * 74.30480 * 15 14 13 34 34 H 1.09002 * 109.46711 * 194.30192 * 15 14 13 35 35 H 1.08003 * 122.63291 * 359.96945 * 20 19 18 36 36 H 1.08003 * 122.46041 * 180.22570 * 21 20 19 37 37 H 1.07995 * 125.13249 * 179.69161 * 22 21 20 38 38 H 1.08998 * 109.48928 * 303.14251 * 26 14 13 39 39 H 1.09002 * 109.52091 * 183.07759 * 26 14 13 40 40 H 1.09006 * 109.62945 * 350.89063 * 27 11 9 41 41 H 1.08992 * 109.63297 * 111.27998 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5874 1.9891 1.3954 5 1 3.4850 1.4710 -0.7970 6 1 1.3919 2.6794 -0.5983 7 6 2.0070 -1.2127 0.0005 8 1 1.4770 -2.1425 -0.1452 9 6 3.4572 -1.2204 0.1986 10 8 4.0219 -0.2196 0.5993 11 7 4.1673 -2.3358 -0.0627 12 6 3.4942 -3.5879 -0.4401 13 6 4.1472 -4.1173 -1.7268 14 7 5.5977 -4.2293 -1.5233 15 6 6.2396 -4.8949 -2.6648 16 6 5.4431 -6.1155 -3.0474 17 7 4.4574 -6.1619 -3.9081 18 6 4.0515 -7.4533 -3.9268 19 6 2.9594 -8.0183 -4.7457 20 6 2.5779 -9.3118 -4.7495 21 6 1.5288 -9.6009 -5.5951 22 6 1.0568 -8.5598 -6.2890 23 16 1.9599 -7.1095 -5.8721 24 7 4.8104 -8.1082 -3.0827 25 8 5.6150 -7.3548 -2.5765 26 6 6.2036 -2.9150 -1.2714 27 6 5.6352 -2.3348 0.0281 28 1 -0.4850 0.8400 -0.0004 29 1 3.6076 -4.3200 0.3595 30 1 2.4360 -3.3958 -0.6172 31 1 3.9473 -3.4298 -2.5488 32 1 3.7364 -5.0984 -1.9650 33 1 6.2803 -4.2079 -3.5100 34 1 7.2514 -5.1927 -2.3897 35 1 3.0552 -10.0616 -4.1359 36 1 1.1209 -10.5960 -5.6936 37 1 0.2441 -8.6031 -6.9988 38 1 5.9750 -2.2444 -2.0997 39 1 7.2842 -3.0238 -1.1791 40 1 5.9932 -1.3138 0.1606 41 1 5.9503 -2.9459 0.8738 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153523617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:50 Heat of formation + Delta-G solvation = 62.367244 kcal Electronic energy + Delta-G solvation = -27635.887270 eV Core-core repulsion = 23645.405708 eV Total energy + Delta-G solvation = -3990.481562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.71936 -40.75549 -38.95608 -38.94545 -36.97681 -35.75110 -35.02334 -33.76538 -32.18402 -30.72753 -29.88228 -28.57061 -26.31888 -26.14916 -24.75873 -24.56057 -23.13662 -22.39904 -20.63699 -19.98395 -19.49366 -19.37812 -18.70496 -18.08255 -17.75783 -16.99426 -16.85358 -16.40016 -16.12061 -16.06793 -15.94082 -15.54362 -14.91053 -14.84147 -14.50178 -14.47843 -14.13528 -13.97091 -13.87548 -13.69423 -13.41193 -13.29368 -13.02731 -12.96783 -12.84528 -12.55760 -12.40977 -12.34453 -12.21311 -12.14271 -11.79483 -11.54409 -11.39076 -11.23596 -10.00908 -9.71976 -9.66982 -9.58928 -9.24645 -8.80927 -7.03281 -0.64035 0.08295 0.36920 0.92903 1.09879 1.31559 1.36370 1.59140 1.62527 1.82409 2.06780 2.29223 2.30652 2.56158 2.82203 2.95061 3.28732 3.67955 3.82902 4.01253 4.06958 4.10440 4.21552 4.30222 4.33352 4.35270 4.44654 4.51230 4.56573 4.59909 4.72289 4.77355 4.80855 4.89888 4.98873 5.10691 5.13439 5.18283 5.34923 5.64692 5.69154 5.78358 5.95738 6.21796 6.60071 6.94310 7.08737 7.95098 8.24730 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.002859 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.012850 B = 9790.673696 C =11470.950953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.068 3.932 3 Si 1.014 2.986 4 H -0.291 1.291 5 H -0.283 1.283 6 H -0.299 1.299 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.552 3.448 10 O -0.642 6.642 11 N -0.635 5.635 12 C 0.127 3.873 13 C 0.056 3.944 14 N -0.530 5.530 15 C 0.145 3.855 16 C 0.207 3.793 17 N -0.494 5.494 18 C 0.231 3.769 19 C -0.171 4.171 20 C -0.084 4.084 21 C -0.146 4.146 22 C -0.188 4.188 23 S 0.158 5.842 24 N -0.385 5.385 25 O 0.094 5.906 26 C 0.057 3.943 27 C 0.117 3.883 28 H 0.292 0.708 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.179 0.821 37 H 0.204 0.796 38 H 0.035 0.965 39 H 0.133 0.867 40 H 0.075 0.925 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.246 -19.325 -13.757 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.147 4.147 3 Si 0.846 3.154 4 H -0.218 1.218 5 H -0.210 1.210 6 H -0.229 1.229 7 C -0.591 4.591 8 H 0.098 0.902 9 C 0.360 3.640 10 O -0.537 6.537 11 N -0.368 5.368 12 C 0.003 3.997 13 C -0.073 4.073 14 N -0.257 5.257 15 C 0.017 3.983 16 C -0.014 4.014 17 N -0.228 5.228 18 C -0.039 4.039 19 C -0.290 4.290 20 C -0.120 4.120 21 C -0.175 4.175 22 C -0.325 4.325 23 S 0.422 5.578 24 N -0.092 5.092 25 O 0.033 5.967 26 C -0.071 4.071 27 C -0.006 4.006 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.176 0.824 35 H 0.169 0.831 36 H 0.196 0.804 37 H 0.221 0.779 38 H 0.053 0.947 39 H 0.151 0.849 40 H 0.093 0.907 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.991 -18.254 -13.757 24.563 hybrid contribution -0.228 -0.216 0.095 0.329 sum 8.763 -18.471 -13.662 24.589 Atomic orbital electron populations 1.69565 1.08407 1.31144 1.38927 1.26290 0.95311 1.03930 0.89194 0.84558 0.76389 0.75968 0.78477 1.21812 1.20981 1.22912 1.21010 0.90559 0.95631 1.51869 0.90201 1.18181 0.88070 0.81297 0.76456 1.90168 1.72943 1.34853 1.55702 1.47717 1.06549 1.10374 1.72117 1.21692 0.97255 0.85016 0.95723 1.22443 0.88437 0.99863 0.96571 1.62212 1.03095 1.22386 1.38046 1.20996 0.97243 0.85622 0.94445 1.28903 0.93351 0.89540 0.89587 1.72167 1.12265 1.17457 1.20903 1.23013 0.97703 0.86392 0.96747 1.21488 1.02295 0.98209 1.07010 1.20631 0.97539 0.94098 0.99720 1.20340 0.97355 1.02100 0.97668 1.26485 1.05428 0.94704 1.05895 1.84704 1.26524 1.11330 1.35194 1.74997 1.04647 1.16958 1.12609 1.85276 1.43080 1.17097 1.51234 1.22517 1.01192 0.87007 0.96362 1.21584 0.79709 1.01360 0.97926 0.89771 0.91534 0.90436 0.94901 0.91051 0.88492 0.82364 0.83140 0.80394 0.77936 0.94702 0.84883 0.90669 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.64 13.92 21.83 0.30 -48.34 16 2 C 0.07 3.94 5.52 85.30 0.47 4.41 16 3 Si 1.01 52.82 25.88 68.60 1.78 54.59 16 4 H -0.29 -15.64 7.11 99.48 0.71 -14.93 16 5 H -0.28 -15.48 6.62 99.48 0.66 -14.82 16 6 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 7 C -0.55 -31.82 9.35 24.83 0.23 -31.59 16 8 H 0.08 4.63 6.02 -2.91 -0.02 4.61 16 9 C 0.55 29.51 7.32 86.36 0.63 30.14 16 10 O -0.64 -37.04 11.82 -4.32 -0.05 -37.09 16 11 N -0.63 -26.88 3.00 -822.15 -2.47 -29.35 16 12 C 0.13 4.70 6.54 86.50 0.57 5.27 16 13 C 0.06 1.71 5.16 86.54 0.45 2.15 16 14 N -0.53 -12.31 4.77 -898.90 -4.29 -16.60 16 15 C 0.15 2.38 5.90 85.55 0.50 2.88 16 16 C 0.21 4.64 6.26 88.35 0.55 5.20 16 17 N -0.49 -13.33 10.64 -302.27 -3.22 -16.55 16 18 C 0.23 6.31 8.02 136.96 1.10 7.41 16 19 C -0.17 -4.10 6.44 24.01 0.15 -3.94 16 20 C -0.08 -1.60 10.05 21.39 0.22 -1.39 16 21 C -0.15 -1.99 10.16 21.14 0.21 -1.77 16 22 C -0.19 -2.54 11.23 66.79 0.75 -1.79 16 23 S 0.16 3.24 23.32 -56.49 -1.32 1.92 16 24 N -0.39 -10.33 12.16 -58.77 -0.71 -11.04 16 25 O 0.09 2.25 11.29 74.47 0.84 3.09 16 26 C 0.06 1.32 5.58 86.38 0.48 1.80 16 27 C 0.12 3.83 6.58 86.35 0.57 4.40 16 28 H 0.29 15.23 8.29 -92.71 -0.77 14.46 16 29 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.08 3.27 5.41 -2.39 -0.01 3.25 16 31 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.07 2.18 5.88 -2.39 -0.01 2.17 16 33 H 0.10 1.44 8.08 -2.39 -0.02 1.42 16 34 H 0.16 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.13 1.89 8.11 -2.39 -0.02 1.87 16 40 H 0.07 2.73 7.09 -2.38 -0.02 2.72 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -74.82 355.51 -1.21 -76.03 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: 1.04 Total: 0.17 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 6.89 Total: 23.17 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -10.38 Total: -121.88 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: 0.79 Total: -34.01 kcal Atomic # 14 Polarization: 52.82 SS G_CDS: 1.78 Total: 54.59 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.32 Total: 1.92 kcal Total: -74.82 -1.21 -76.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153523617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.401 kcal (2) G-P(sol) polarization free energy of solvation -74.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds