Wall clock time and date at job start Wed Apr 1 2020 05:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99737 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99751 * 3 2 1 6 6 H 1.48500 * 109.46738 * 149.99993 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 N 1.30961 * 126.43837 * 89.70984 * 11 10 9 13 13 C 1.35230 * 105.57803 * 179.86247 * 12 11 10 14 14 C 1.48386 * 126.41638 * 180.14940 * 13 12 11 15 15 C 1.39346 * 119.63682 * 180.02562 * 14 13 12 16 16 C 1.38260 * 119.15916 * 179.73228 * 15 14 13 17 17 C 1.39416 * 118.43778 * 0.52544 * 16 15 14 18 18 N 1.39480 * 120.40154 * 179.75054 * 17 16 15 19 19 C 1.47015 * 111.00359 * 303.61599 * 18 17 16 20 20 C 1.53096 * 109.25791 * 177.60567 * 19 18 17 21 21 O 1.43014 * 109.26016 * 56.85351 * 20 19 18 22 22 C 1.43022 * 113.73374 * 301.32820 * 21 20 19 23 23 C 1.47018 * 111.00203 * 179.97438 * 18 17 16 24 24 C 1.39102 * 119.19676 * 359.73526 * 17 16 15 25 25 N 1.31593 * 120.77061 * 359.97438 * 24 17 16 26 26 N 1.30777 * 107.17044 * 0.40773 * 13 12 11 27 27 O 1.21291 * 110.08932 * 359.74290 * 26 13 12 28 28 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 30 30 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 31 31 H 1.08001 * 120.41982 * 0.02562 * 15 14 13 32 32 H 1.07999 * 120.78214 * 180.24161 * 16 15 14 33 33 H 1.08994 * 109.50796 * 297.54529 * 19 18 17 34 34 H 1.09007 * 109.50164 * 57.67361 * 19 18 17 35 35 H 1.09000 * 109.50690 * 296.91545 * 20 19 18 36 36 H 1.09007 * 109.50449 * 176.78521 * 20 19 18 37 37 H 1.09000 * 109.50341 * 298.73333 * 22 21 20 38 38 H 1.09000 * 109.53682 * 178.62710 * 22 21 20 39 39 H 1.09005 * 109.50594 * 302.33460 * 23 18 17 40 40 H 1.09002 * 109.50423 * 62.45551 * 23 18 17 41 41 H 1.08007 * 119.61370 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 7 1.7097 -6.0291 -1.0540 13 6 1.2716 -7.2146 -0.5730 14 6 0.8343 -8.3835 -1.3757 15 6 0.4065 -9.5417 -0.7298 16 6 -0.0041 -10.6230 -1.4873 17 6 0.0372 -10.5142 -2.8766 18 7 -0.3625 -11.5818 -3.6804 19 6 0.4028 -12.7961 -3.3627 20 6 -0.1077 -13.9545 -4.2236 21 8 -0.0061 -13.5964 -5.6045 22 6 -0.7401 -12.4183 -5.9492 23 6 -0.2362 -11.2443 -5.1058 24 6 0.4816 -9.3281 -3.4515 25 7 0.8597 -8.3161 -2.7001 26 7 1.3002 -7.1360 0.7321 27 8 1.7080 -6.0464 1.0750 28 1 -0.4850 0.8401 -0.0004 29 1 3.1243 -3.7315 -0.8895 30 1 3.1244 -3.7315 0.8905 31 1 0.3913 -9.5924 0.3489 32 1 -0.3444 -11.5321 -1.0140 33 1 1.4590 -12.6256 -3.5711 34 1 0.2743 -13.0418 -2.3085 35 1 -1.1492 -14.1601 -3.9766 36 1 0.4945 -14.8428 -4.0327 37 1 -1.8000 -12.5793 -5.7523 38 1 -0.5960 -12.1953 -7.0064 39 1 -0.8311 -10.3574 -5.3240 40 1 0.8098 -11.0489 -5.3421 41 1 0.5168 -9.2366 -4.5271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274144526.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:24 Heat of formation + Delta-G solvation = 79.511806 kcal Electronic energy + Delta-G solvation = -26272.965173 eV Core-core repulsion = 22283.227054 eV Total energy + Delta-G solvation = -3989.738118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.25760 -41.27700 -39.55555 -36.70429 -35.43241 -33.43646 -32.82213 -32.54624 -31.77843 -30.64835 -28.50103 -27.53565 -25.65449 -25.49783 -24.34323 -23.44797 -22.56193 -21.68193 -20.80877 -18.43675 -18.00076 -17.89242 -17.38388 -17.01494 -16.40480 -16.26909 -15.83003 -15.55250 -15.33967 -14.90646 -14.89141 -14.55652 -14.41751 -14.14245 -14.05440 -13.61708 -13.25863 -12.93616 -12.84214 -12.62223 -12.11929 -12.00434 -11.91916 -11.74664 -11.29884 -11.15717 -11.11380 -11.08419 -10.82932 -10.74023 -10.34299 -10.20994 -9.99420 -9.68265 -9.42580 -9.17239 -8.54957 -8.33151 -6.72273 -6.34506 -4.08981 0.36874 0.93712 1.41741 2.38424 2.93162 3.01458 3.18371 3.20033 3.25698 3.28073 3.32952 3.43674 3.62830 3.90699 4.08594 4.16711 4.24031 4.34139 4.37245 4.52954 4.62071 4.65417 4.70014 4.85119 4.91366 5.02772 5.03003 5.06186 5.14620 5.19916 5.29302 5.32400 5.33585 5.53278 5.57079 5.68355 5.88981 5.93752 6.12641 6.22609 6.24986 6.52774 6.53344 7.49749 7.65500 8.24163 8.36909 9.11377 10.73457 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.025319 B = 0.001771 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.611015 B =15802.738758 C =16516.465821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.925 3.075 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.081 0.919 9 S -0.081 6.081 10 C -0.043 4.043 11 C 0.228 3.772 12 N -0.450 5.450 13 C 0.211 3.789 14 C 0.182 3.818 15 C -0.107 4.107 16 C -0.096 4.096 17 C 0.067 3.933 18 N -0.481 5.481 19 C 0.018 3.982 20 C 0.063 3.937 21 O -0.383 6.383 22 C 0.064 3.936 23 C 0.006 3.994 24 C 0.062 3.938 25 N -0.418 5.418 26 N -0.377 5.377 27 O 0.086 5.914 28 H 0.270 0.730 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.242 -27.398 -7.038 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.751 3.249 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.674 4.674 8 H 0.099 0.901 9 S 0.145 5.855 10 C -0.192 4.192 11 C 0.007 3.993 12 N -0.184 5.184 13 C -0.059 4.059 14 C 0.043 3.957 15 C -0.130 4.130 16 C -0.124 4.124 17 C -0.034 4.034 18 N -0.197 5.197 19 C -0.108 4.108 20 C -0.014 4.014 21 O -0.301 6.301 22 C -0.014 4.014 23 C -0.121 4.121 24 C -0.101 4.101 25 N -0.127 5.127 26 N -0.086 5.086 27 O 0.024 5.976 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.415 -27.713 -7.419 28.724 hybrid contribution 1.973 1.105 0.520 2.320 sum 0.558 -26.609 -6.899 27.494 Atomic orbital electron populations 1.70003 1.06027 1.27814 1.46344 1.25032 0.95125 0.99238 0.94160 0.86065 0.79383 0.80998 0.78497 1.20122 1.20691 1.19460 1.22711 0.94888 0.90033 1.59759 0.90115 1.85233 1.05119 0.98225 1.96956 1.22011 1.04459 0.85612 1.07094 1.28303 0.94185 0.97006 0.79819 1.72181 1.17206 1.01334 1.27635 1.23295 1.01653 0.93638 0.87359 1.17777 0.99777 0.89387 0.88768 1.21912 0.97204 0.91927 1.01921 1.21111 1.00144 0.99651 0.91501 1.20083 0.96512 0.93379 0.93410 1.59185 1.52490 1.03328 1.04671 1.23012 0.96426 0.89519 1.01839 1.22717 1.01699 0.96117 0.80908 1.88028 1.72205 1.44364 1.25540 1.22719 0.95943 0.83523 0.99167 1.23086 1.02121 1.00477 0.86398 1.23031 0.97817 0.88832 1.00432 1.67414 1.11304 1.28948 1.05052 1.74801 1.18406 1.01061 1.14312 1.85278 1.58776 1.17660 1.35878 0.91967 0.86932 0.87752 0.83500 0.83809 0.92479 0.88696 0.91841 0.87794 0.91837 0.87618 0.88221 0.92011 0.81807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.09 13.22 55.49 0.73 -24.35 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 20.66 29.55 -169.99 -5.02 15.63 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.53 -14.19 9.50 30.94 0.29 -13.89 16 8 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.08 -2.05 21.42 -107.50 -2.30 -4.35 16 10 C -0.04 -0.84 6.30 36.01 0.23 -0.61 16 11 C 0.23 4.36 7.75 -12.99 -0.10 4.26 16 12 N -0.45 -9.04 11.56 -9.88 -0.11 -9.16 16 13 C 0.21 3.85 7.90 -156.11 -1.23 2.61 16 14 C 0.18 2.82 6.75 -82.93 -0.56 2.26 16 15 C -0.11 -1.27 9.72 -39.16 -0.38 -1.65 16 16 C -0.10 -0.90 9.31 -39.13 -0.36 -1.26 16 17 C 0.07 0.64 5.65 -83.62 -0.47 0.17 16 18 N -0.48 -3.63 4.77 -170.65 -0.81 -4.44 16 19 C 0.02 0.10 5.41 -3.71 -0.02 0.08 16 20 C 0.06 0.33 7.01 37.21 0.26 0.59 16 21 O -0.38 -2.80 10.83 -35.23 -0.38 -3.18 16 22 C 0.06 0.35 7.01 37.20 0.26 0.61 16 23 C 0.01 0.04 4.33 -3.71 -0.02 0.02 16 24 C 0.06 0.71 9.99 -17.33 -0.17 0.53 16 25 N -0.42 -6.45 10.28 -9.59 -0.10 -6.55 16 26 N -0.38 -6.70 11.83 30.97 0.37 -6.33 16 27 O 0.09 1.57 11.29 18.03 0.20 1.77 16 28 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.11 2.09 8.14 -51.91 -0.42 1.67 16 30 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 31 H 0.15 1.57 7.85 -52.49 -0.41 1.15 16 32 H 0.14 0.93 7.27 -52.49 -0.38 0.55 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.44 6.91 -51.92 -0.36 0.08 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.57 7.24 -51.93 -0.38 0.19 16 40 H 0.06 0.40 7.55 -51.93 -0.39 0.01 16 41 H 0.16 1.48 5.82 -52.48 -0.31 1.17 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -33.22 363.94 -9.05 -42.27 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -4.73 Total: -2.45 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.37 Total: -4.34 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.07 Total: -50.84 kcal Atomic # 8 Polarization: -1.24 SS G_CDS: -0.18 Total: -1.41 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -2.30 Total: -4.35 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.22 -9.05 -42.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274144526.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.786 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds