Wall clock time and date at job start Wed Apr 1 2020 05:21:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31630 * 1
3 3 Si 1.86800 * 120.00086 * 2 1
4 4 H 1.48501 * 109.46755 * 269.99737 * 3 2 1
5 5 H 1.48495 * 109.46931 * 29.99751 * 3 2 1
6 6 H 1.48500 * 109.46738 * 149.99993 * 3 2 1
7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1
9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1
10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2
11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7
12 12 N 1.30961 * 126.43837 * 89.70984 * 11 10 9
13 13 C 1.35230 * 105.57803 * 179.86247 * 12 11 10
14 14 C 1.48386 * 126.41638 * 180.14940 * 13 12 11
15 15 C 1.39346 * 119.63682 * 180.02562 * 14 13 12
16 16 C 1.38260 * 119.15916 * 179.73228 * 15 14 13
17 17 C 1.39416 * 118.43778 * 0.52544 * 16 15 14
18 18 N 1.39480 * 120.40154 * 179.75054 * 17 16 15
19 19 C 1.47015 * 111.00359 * 303.61599 * 18 17 16
20 20 C 1.53096 * 109.25791 * 177.60567 * 19 18 17
21 21 O 1.43014 * 109.26016 * 56.85351 * 20 19 18
22 22 C 1.43022 * 113.73374 * 301.32820 * 21 20 19
23 23 C 1.47018 * 111.00203 * 179.97438 * 18 17 16
24 24 C 1.39102 * 119.19676 * 359.73526 * 17 16 15
25 25 N 1.31593 * 120.77061 * 359.97438 * 24 17 16
26 26 N 1.30777 * 107.17044 * 0.40773 * 13 12 11
27 27 O 1.21291 * 110.08932 * 359.74290 * 26 13 12
28 28 H 0.97005 * 119.99878 * 0.02562 * 1 2 3
29 29 H 1.09005 * 109.46889 * 299.99975 * 10 9 7
30 30 H 1.09000 * 109.47231 * 59.99947 * 10 9 7
31 31 H 1.08001 * 120.41982 * 0.02562 * 15 14 13
32 32 H 1.07999 * 120.78214 * 180.24161 * 16 15 14
33 33 H 1.08994 * 109.50796 * 297.54529 * 19 18 17
34 34 H 1.09007 * 109.50164 * 57.67361 * 19 18 17
35 35 H 1.09000 * 109.50690 * 296.91545 * 20 19 18
36 36 H 1.09007 * 109.50449 * 176.78521 * 20 19 18
37 37 H 1.09000 * 109.50341 * 298.73333 * 22 21 20
38 38 H 1.09000 * 109.53682 * 178.62710 * 22 21 20
39 39 H 1.09005 * 109.50594 * 302.33460 * 23 18 17
40 40 H 1.09002 * 109.50423 * 62.45551 * 23 18 17
41 41 H 1.08007 * 119.61370 * 179.97438 * 24 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4978 2.0463 -1.4001
5 1 1.4478 2.6526 0.7000
6 1 3.5479 1.4400 0.7001
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0001
9 16 1.1292 -2.7280 0.0005
10 6 2.5157 -3.8915 0.0005
11 6 1.9872 -5.3028 -0.0001
12 7 1.7097 -6.0291 -1.0540
13 6 1.2716 -7.2146 -0.5730
14 6 0.8343 -8.3835 -1.3757
15 6 0.4065 -9.5417 -0.7298
16 6 -0.0041 -10.6230 -1.4873
17 6 0.0372 -10.5142 -2.8766
18 7 -0.3625 -11.5818 -3.6804
19 6 0.4028 -12.7961 -3.3627
20 6 -0.1077 -13.9545 -4.2236
21 8 -0.0061 -13.5964 -5.6045
22 6 -0.7401 -12.4183 -5.9492
23 6 -0.2362 -11.2443 -5.1058
24 6 0.4816 -9.3281 -3.4515
25 7 0.8597 -8.3161 -2.7001
26 7 1.3002 -7.1360 0.7321
27 8 1.7080 -6.0464 1.0750
28 1 -0.4850 0.8401 -0.0004
29 1 3.1243 -3.7315 -0.8895
30 1 3.1244 -3.7315 0.8905
31 1 0.3913 -9.5924 0.3489
32 1 -0.3444 -11.5321 -1.0140
33 1 1.4590 -12.6256 -3.5711
34 1 0.2743 -13.0418 -2.3085
35 1 -1.1492 -14.1601 -3.9766
36 1 0.4945 -14.8428 -4.0327
37 1 -1.8000 -12.5793 -5.7523
38 1 -0.5960 -12.1953 -7.0064
39 1 -0.8311 -10.3574 -5.3240
40 1 0.8098 -11.0489 -5.3421
41 1 0.5168 -9.2366 -4.5271
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000274144526.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:21:23
Heat of formation + Delta-G solvation = 54.877114 kcal
Electronic energy + Delta-G solvation = -26274.033413 eV
Core-core repulsion = 22283.227054 eV
Total energy + Delta-G solvation = -3990.806359 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 348.104 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-46.68047 -42.02814 -40.22437 -37.50265 -36.70958 -34.80676 -34.58711 -33.67850
-32.28749 -31.55482 -30.00019 -28.24388 -27.69437 -26.26872 -25.34663 -24.43048
-23.53111 -22.69968 -21.52729 -20.00731 -19.34500 -19.10880 -18.55939 -17.80854
-17.39353 -16.94891 -16.89266 -16.40049 -16.36608 -16.19842 -15.89417 -15.72118
-15.53652 -15.21536 -14.96488 -14.82027 -14.61247 -14.29949 -13.64029 -13.44263
-13.30561 -13.20270 -13.07701 -12.88752 -12.76781 -12.59700 -12.36546 -12.23098
-12.07303 -11.79967 -11.59085 -11.20138 -11.15347 -10.85014 -10.80014 -10.48007
-10.34433 -9.14254 -8.76547 -8.38487 -6.18397 -0.67289 -0.04483 0.10544
1.03775 1.38677 1.45277 1.52035 1.57989 1.75129 2.11854 2.22984
2.33150 2.61422 2.66517 2.89325 2.98443 3.23553 3.48787 3.53721
3.67195 3.72655 3.82386 3.86613 3.97669 4.09719 4.16179 4.18926
4.23988 4.30424 4.46388 4.49131 4.56510 4.61927 4.66251 4.74983
4.81132 4.83345 4.90115 4.93876 5.18423 5.42926 5.60363 5.79809
6.11620 6.18884 6.70106 6.94616 7.04225 8.71046
Molecular weight = 348.10amu
Principal moments of inertia in cm(-1)
A = 0.025319 B = 0.001771 C = 0.001695
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1105.611015 B =15802.738758 C =16516.465821
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.910 5.910
2 C 0.017 3.983
3 Si 1.000 3.000
4 H -0.270 1.270
5 H -0.278 1.278
6 H -0.256 1.256
7 C -0.537 4.537
8 H 0.092 0.908
9 S -0.151 6.151
10 C -0.018 4.018
11 C 0.224 3.776
12 N -0.475 5.475
13 C 0.212 3.788
14 C 0.137 3.863
15 C -0.099 4.099
16 C -0.089 4.089
17 C 0.086 3.914
18 N -0.480 5.480
19 C 0.016 3.984
20 C 0.061 3.939
21 O -0.403 6.403
22 C 0.064 3.936
23 C 0.002 3.998
24 C 0.051 3.949
25 N -0.455 5.455
26 N -0.378 5.378
27 O 0.082 5.918
28 H 0.272 0.728
29 H 0.122 0.878
30 H 0.130 0.870
31 H 0.156 0.844
32 H 0.181 0.819
33 H 0.051 0.949
34 H 0.113 0.887
35 H 0.069 0.931
36 H 0.122 0.878
37 H 0.067 0.933
38 H 0.120 0.880
39 H 0.105 0.895
40 H 0.061 0.939
41 H 0.182 0.818
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.843 -29.278 -7.387 30.207
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.546 5.546
2 C -0.189 4.189
3 Si 0.822 3.178
4 H -0.195 1.195
5 H -0.204 1.204
6 H -0.180 1.180
7 C -0.684 4.684
8 H 0.110 0.890
9 S 0.075 5.925
10 C -0.167 4.167
11 C 0.003 3.997
12 N -0.209 5.209
13 C -0.059 4.059
14 C 0.000 4.000
15 C -0.121 4.121
16 C -0.116 4.116
17 C -0.016 4.016
18 N -0.195 5.195
19 C -0.109 4.109
20 C -0.015 4.015
21 O -0.322 6.322
22 C -0.012 4.012
23 C -0.125 4.125
24 C -0.112 4.112
25 N -0.164 5.164
26 N -0.087 5.087
27 O 0.023 5.977
28 H 0.081 0.919
29 H 0.140 0.860
30 H 0.148 0.852
31 H 0.174 0.826
32 H 0.198 0.802
33 H 0.069 0.931
34 H 0.131 0.869
35 H 0.087 0.913
36 H 0.140 0.860
37 H 0.085 0.915
38 H 0.138 0.862
39 H 0.123 0.877
40 H 0.079 0.921
41 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges -0.805 -29.615 -7.754 30.624
hybrid contribution 1.722 1.406 0.505 2.280
sum 0.917 -28.208 -7.249 29.140
Atomic orbital electron populations
1.70152 1.07903 1.28830 1.47714 1.26109 0.95988 1.03250 0.93507
0.84921 0.78307 0.75875 0.78730 1.19534 1.20361 1.17951 1.23103
0.95516 0.90491 1.59307 0.88976 1.85300 1.09647 1.00344 1.97196
1.21814 1.01969 0.84042 1.08835 1.28138 0.94521 0.96919 0.80104
1.72165 1.17903 1.02480 1.28400 1.23860 1.00529 0.93868 0.87612
1.17860 1.03209 0.89873 0.89102 1.22019 0.96312 0.91270 1.02512
1.21455 0.98930 1.00002 0.91232 1.20219 0.94167 0.93267 0.93936
1.59222 1.52028 1.03164 1.05127 1.23138 0.95801 0.88738 1.03193
1.22867 1.02443 0.96338 0.79877 1.88009 1.72584 1.44880 1.26695
1.22807 0.95891 0.82692 0.99846 1.23186 1.02289 1.01221 0.85764
1.23366 0.97864 0.88916 1.01031 1.67277 1.12722 1.30950 1.05494
1.74760 1.18904 1.00787 1.14265 1.85258 1.58957 1.17891 1.35618
0.91851 0.85976 0.85163 0.82585 0.80205 0.93072 0.86863 0.91252
0.86040 0.91490 0.86175 0.87722 0.92097 0.80120
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -53.66 13.22 21.65 0.29 -53.38 16
2 C 0.02 0.91 5.49 84.86 0.47 1.38 16
3 Si 1.00 42.13 29.55 68.60 2.03 44.16 16
4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16
5 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16
6 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16
7 C -0.54 -29.07 9.50 67.96 0.65 -28.42 16
8 H 0.09 4.60 7.80 -2.91 -0.02 4.58 16
9 S -0.15 -7.83 21.42 -56.49 -1.21 -9.04 16
10 C -0.02 -0.69 6.30 71.24 0.45 -0.24 16
11 C 0.22 8.72 7.75 88.36 0.68 9.40 16
12 N -0.48 -19.56 11.56 -302.52 -3.50 -23.05 16
13 C 0.21 7.87 7.90 137.28 1.08 8.96 16
14 C 0.14 4.29 6.75 41.99 0.28 4.58 16
15 C -0.10 -2.23 9.72 22.54 0.22 -2.01 16
16 C -0.09 -1.43 9.31 22.56 0.21 -1.22 16
17 C 0.09 1.48 5.65 38.42 0.22 1.69 16
18 N -0.48 -6.01 4.77 -693.81 -3.31 -9.32 16
19 C 0.02 0.14 5.41 86.31 0.47 0.61 16
20 C 0.06 0.48 7.01 72.01 0.50 0.98 16
21 O -0.40 -5.01 10.83 -148.98 -1.61 -6.62 16
22 C 0.06 0.58 7.01 72.01 0.50 1.09 16
23 C 0.00 0.02 4.33 86.31 0.37 0.40 16
24 C 0.05 1.14 9.99 84.94 0.85 1.99 16
25 N -0.45 -14.18 10.28 -184.25 -1.89 -16.08 16
26 N -0.38 -13.56 11.83 -59.13 -0.70 -14.26 16
27 O 0.08 3.04 11.29 74.59 0.84 3.89 16
28 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16
29 H 0.12 4.52 8.14 -2.39 -0.02 4.50 16
30 H 0.13 4.37 8.14 -2.40 -0.02 4.35 16
31 H 0.16 3.13 7.85 -2.91 -0.02 3.11 16
32 H 0.18 1.55 7.27 -2.91 -0.02 1.53 16
33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16
34 H 0.11 0.60 6.91 -2.38 -0.02 0.58 16
35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16
36 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16
37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16
38 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16
39 H 0.10 1.01 7.24 -2.38 -0.02 0.99 16
40 H 0.06 0.68 7.55 -2.39 -0.02 0.67 16
41 H 0.18 3.12 5.82 -2.91 -0.02 3.10 16
Total: -1.00 -73.68 363.94 -1.03 -74.71
By element:
Atomic # 1 Polarization: 8.72 SS G_CDS: 1.08 Total: 9.80 kcal
Atomic # 6 Polarization: -7.78 SS G_CDS: 6.96 Total: -0.82 kcal
Atomic # 7 Polarization: -106.97 SS G_CDS: -9.12 Total: -116.09 kcal
Atomic # 8 Polarization: -1.96 SS G_CDS: -0.77 Total: -2.73 kcal
Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal
Atomic # 16 Polarization: -7.83 SS G_CDS: -1.21 Total: -9.04 kcal
Total: -73.68 -1.03 -74.71 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000274144526.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.592 kcal
(2) G-P(sol) polarization free energy of solvation -73.682 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.909 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.032 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.714 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.877 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds