Wall clock time and date at job start Wed Apr 1 2020 04:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99718 * 2 1 4 4 H 1.48506 * 109.46617 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47276 * 300.00077 * 3 2 1 6 6 H 1.48491 * 109.47488 * 60.00135 * 3 2 1 7 7 C 1.37870 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47341 * 174.85813 * 9 7 2 11 11 H 1.09001 * 109.46945 * 54.20045 * 10 9 7 12 12 N 1.46499 * 109.47349 * 174.20190 * 10 9 7 13 13 C 1.34776 * 120.00144 * 278.67779 * 12 10 9 14 14 O 1.21286 * 119.99739 * 355.03800 * 13 12 10 15 15 C 1.50697 * 120.00135 * 175.03979 * 13 12 10 16 16 S 1.81004 * 109.47054 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00169 * 180.02562 * 16 15 13 18 18 N 1.30189 * 125.67487 * 0.02562 * 17 16 15 19 19 N 1.40171 * 108.03188 * 179.75963 * 18 17 16 20 20 H 0.97004 * 126.29832 * 180.22910 * 19 18 17 21 21 C 1.34910 * 107.40921 * 0.36180 * 19 18 17 22 22 O 1.21825 * 126.21100 * 179.91093 * 21 19 18 23 23 N 1.34791 * 107.57134 * 359.64307 * 21 19 18 24 24 H 0.97007 * 125.82358 * 180.19391 * 23 21 19 25 25 C 1.50701 * 109.47163 * 294.19999 * 10 9 7 26 26 C 1.38231 * 120.00175 * 279.72647 * 25 10 9 27 27 C 1.38239 * 119.99847 * 179.80497 * 26 25 10 28 28 C 1.38235 * 119.99993 * 0.40260 * 27 26 25 29 29 C 1.38228 * 119.99963 * 359.85326 * 28 27 26 30 30 C 1.38234 * 120.00199 * 359.95804 * 29 28 27 31 31 H 0.96997 * 119.99687 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47271 * 54.85543 * 9 7 2 33 33 H 1.09004 * 109.46760 * 294.85501 * 9 7 2 34 34 H 0.97000 * 119.99944 * 98.67097 * 12 10 9 35 35 H 1.09001 * 109.47385 * 60.00082 * 15 13 12 36 36 H 1.08997 * 109.47334 * 299.99318 * 15 13 12 37 37 H 1.08002 * 120.00000 * 359.97438 * 26 25 10 38 38 H 1.07998 * 119.99687 * 180.22953 * 27 26 25 39 39 H 1.07997 * 119.99460 * 179.82898 * 28 27 26 40 40 H 1.08009 * 120.00190 * 179.97438 * 29 28 27 41 41 H 1.08002 * 119.99996 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2402 -3.6591 -0.1305 11 1 2.9963 -3.5811 0.6508 12 7 1.5240 -4.9296 0.0083 13 6 1.2214 -5.4022 1.2336 14 8 1.6195 -4.8233 2.2223 15 6 0.3884 -6.6500 1.3754 16 16 0.1576 -7.0252 3.1310 17 6 -0.8199 -8.4858 3.0059 18 7 -1.2073 -9.0475 1.8971 19 7 -1.9572 -10.1851 2.2259 20 1 -2.3704 -10.8011 1.6007 21 6 -2.0014 -10.2643 3.5720 22 8 -2.5673 -11.1236 4.2242 23 7 -1.3006 -9.2233 4.0640 24 1 -1.1597 -9.0270 5.0035 25 6 2.9059 -3.6028 -1.4813 26 6 2.2497 -4.0899 -2.5961 27 6 2.8587 -4.0345 -3.8359 28 6 4.1274 -3.4995 -3.9594 29 6 4.7857 -3.0172 -2.8437 30 6 4.1751 -3.0691 -1.6046 31 1 -0.4849 0.8400 0.0004 32 1 0.5568 -2.5179 -0.8406 33 1 0.6957 -2.5980 0.9322 34 1 1.2675 -5.4305 -0.7817 35 1 0.8965 -7.4832 0.8899 36 1 -0.5830 -6.4937 0.9063 37 1 1.2600 -4.5113 -2.4990 38 1 2.3445 -4.4117 -4.7074 39 1 4.6042 -3.4588 -4.9275 40 1 5.7771 -2.5996 -2.9401 41 1 4.6894 -2.6918 -0.7330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288104126.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:53 Heat of formation + Delta-G solvation = 26.769555 kcal Electronic energy + Delta-G solvation = -26650.449529 eV Core-core repulsion = 22658.424335 eV Total energy + Delta-G solvation = -3992.025194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.62508 -39.84620 -38.62110 -37.60835 -35.29147 -34.05804 -32.98494 -31.71501 -30.95953 -30.52865 -29.60767 -28.49843 -24.84349 -23.86916 -22.94534 -22.44624 -22.22842 -20.89672 -19.75398 -19.57116 -17.60416 -17.08165 -16.85664 -16.83015 -16.77365 -16.07737 -15.90124 -15.49297 -15.32746 -14.77798 -14.58917 -14.22577 -14.01532 -13.47228 -13.34156 -13.05769 -12.99739 -12.69820 -12.58879 -12.47270 -12.19642 -11.60340 -11.52108 -11.21866 -11.06687 -10.91584 -10.78724 -10.76893 -10.70600 -10.13326 -10.03654 -9.86909 -9.58284 -9.19909 -8.71833 -8.54314 -8.40350 -8.15685 -8.05921 -6.05137 -4.06641 0.50303 1.31353 1.40087 1.74379 1.78521 1.96454 2.32369 2.70596 3.29124 3.32207 3.37406 3.40628 3.50687 4.19161 4.36220 4.42918 4.72048 4.77496 5.08012 5.10573 5.15867 5.21181 5.30690 5.33417 5.44950 5.83666 5.91390 5.99056 6.09538 6.30243 6.40338 6.41654 6.58257 6.63585 6.78402 6.84059 6.99461 7.05699 7.35672 7.47057 7.59525 7.72643 7.76524 7.92058 8.26222 8.36922 8.97083 9.56867 11.06522 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012414 B = 0.002487 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.906167 B =11257.148109 C =12784.493210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.182 3.818 11 H 0.089 0.911 12 N -0.712 5.712 13 C 0.530 3.470 14 O -0.520 6.520 15 C -0.155 4.155 16 S 0.115 5.885 17 C 0.242 3.758 18 N -0.284 5.284 19 N -0.543 5.543 20 H 0.457 0.543 21 C 0.656 3.344 22 O -0.555 6.555 23 N -0.636 5.636 24 H 0.444 0.556 25 C -0.049 4.049 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.134 4.134 29 C -0.120 4.120 30 C -0.097 4.097 31 H 0.260 0.740 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.395 0.605 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.256 -16.440 -1.757 16.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.080 3.920 11 H 0.107 0.893 12 N -0.363 5.363 13 C 0.313 3.687 14 O -0.396 6.396 15 C -0.307 4.307 16 S 0.340 5.660 17 C -0.145 4.145 18 N -0.115 5.115 19 N -0.295 5.295 20 H 0.305 0.695 21 C 0.351 3.649 22 O -0.428 6.428 23 N -0.291 5.291 24 H 0.287 0.713 25 C -0.050 4.050 26 C -0.138 4.138 27 C -0.139 4.139 28 C -0.152 4.152 29 C -0.138 4.138 30 C -0.115 4.115 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.230 0.770 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.375 -15.913 -0.745 16.106 hybrid contribution -0.545 -0.072 -0.831 0.996 sum 1.830 -15.984 -1.576 16.166 Atomic orbital electron populations 1.69965 1.06026 1.26546 1.50685 1.24940 0.94795 0.99162 0.95213 0.86559 0.80186 0.83888 0.77549 1.19645 1.21098 1.21004 1.21050 0.93018 0.90278 1.50697 0.92320 1.19443 0.93544 0.90402 0.97994 1.20414 0.95514 0.82823 0.93297 0.89275 1.46159 1.58775 1.24399 1.07018 1.19305 0.80621 0.84326 0.84445 1.90794 1.52786 1.59161 1.36885 1.23891 1.06564 1.02163 0.98059 1.86835 1.57191 1.15240 1.06741 1.26673 1.00923 1.00879 0.86065 1.77518 1.15115 0.99990 1.18919 1.46552 1.51125 1.25501 1.06325 0.69458 1.16768 0.81762 0.82894 0.83463 1.91173 1.50187 1.38287 1.63203 1.43536 1.49844 1.25366 1.10322 0.71326 1.19852 0.93768 0.96425 0.94935 1.20833 0.99276 1.01228 0.92491 1.20983 0.95444 1.00466 0.97003 1.20997 0.95561 1.00434 0.98176 1.21053 0.99852 1.00094 0.92847 1.20974 0.94514 0.98305 0.97714 0.93035 0.95747 0.95643 0.76989 0.85559 0.85246 0.86650 0.86664 0.86831 0.86560 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -13.57 8.53 -34.44 -0.29 -13.86 16 8 H 0.06 1.51 6.79 -52.49 -0.36 1.15 16 9 C 0.02 0.57 4.68 -27.88 -0.13 0.44 16 10 C 0.18 3.39 2.19 -69.08 -0.15 3.23 16 11 H 0.09 1.80 7.49 -51.93 -0.39 1.41 16 12 N -0.71 -10.32 5.05 -54.93 -0.28 -10.59 16 13 C 0.53 7.72 7.71 -10.99 -0.08 7.63 16 14 O -0.52 -9.76 15.56 5.55 0.09 -9.67 16 15 C -0.15 -1.54 5.67 36.00 0.20 -1.33 16 16 S 0.11 1.16 21.45 -107.50 -2.31 -1.15 16 17 C 0.24 2.31 8.33 -88.20 -0.73 1.58 16 18 N -0.28 -2.82 11.98 30.71 0.37 -2.45 16 19 N -0.54 -5.10 7.39 27.70 0.20 -4.90 16 20 H 0.46 3.06 8.96 -182.54 -1.64 1.43 16 21 C 0.66 7.38 9.41 -86.79 -0.82 6.56 16 22 O -0.56 -8.01 18.06 5.08 0.09 -7.91 16 23 N -0.64 -5.76 6.09 -16.34 -0.10 -5.86 16 24 H 0.44 2.89 8.96 -40.82 -0.37 2.53 16 25 C -0.05 -0.84 4.50 -104.62 -0.47 -1.31 16 26 C -0.12 -1.79 9.02 -39.58 -0.36 -2.15 16 27 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 28 C -0.13 -1.78 10.05 -39.59 -0.40 -2.18 16 29 C -0.12 -1.73 10.05 -39.59 -0.40 -2.13 16 30 C -0.10 -1.59 8.83 -39.58 -0.35 -1.94 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.03 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.40 4.43 6.87 -40.82 -0.28 4.15 16 35 H 0.13 0.95 8.14 -51.91 -0.42 0.53 16 36 H 0.13 1.13 8.14 -51.92 -0.42 0.71 16 37 H 0.12 1.50 6.95 -52.49 -0.36 1.14 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 41 H 0.12 1.98 7.84 -52.49 -0.41 1.57 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -35.04 373.04 -10.96 -46.01 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.90 Total: 5.89 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -4.47 Total: -5.91 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.93 Total: -49.08 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.18 Total: -17.59 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.31 Total: -1.15 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.04 -10.96 -46.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288104126.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.779 kcal (2) G-P(sol) polarization free energy of solvation -35.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds