Wall clock time and date at job start Wed Apr 1 2020 04:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99718 * 2 1 4 4 H 1.48506 * 109.46617 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47276 * 300.00077 * 3 2 1 6 6 H 1.48491 * 109.47488 * 60.00135 * 3 2 1 7 7 C 1.37870 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47341 * 174.85813 * 9 7 2 11 11 H 1.09001 * 109.46945 * 54.20045 * 10 9 7 12 12 N 1.46499 * 109.47349 * 174.20190 * 10 9 7 13 13 C 1.34776 * 120.00144 * 278.67779 * 12 10 9 14 14 O 1.21286 * 119.99739 * 355.03800 * 13 12 10 15 15 C 1.50697 * 120.00135 * 175.03979 * 13 12 10 16 16 S 1.81004 * 109.47054 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00169 * 180.02562 * 16 15 13 18 18 N 1.30189 * 125.67487 * 0.02562 * 17 16 15 19 19 N 1.40171 * 108.03188 * 179.75963 * 18 17 16 20 20 H 0.97004 * 126.29832 * 180.22910 * 19 18 17 21 21 C 1.34910 * 107.40921 * 0.36180 * 19 18 17 22 22 O 1.21825 * 126.21100 * 179.91093 * 21 19 18 23 23 N 1.34791 * 107.57134 * 359.64307 * 21 19 18 24 24 H 0.97007 * 125.82358 * 180.19391 * 23 21 19 25 25 C 1.50701 * 109.47163 * 294.19999 * 10 9 7 26 26 C 1.38231 * 120.00175 * 279.72647 * 25 10 9 27 27 C 1.38239 * 119.99847 * 179.80497 * 26 25 10 28 28 C 1.38235 * 119.99993 * 0.40260 * 27 26 25 29 29 C 1.38228 * 119.99963 * 359.85326 * 28 27 26 30 30 C 1.38234 * 120.00199 * 359.95804 * 29 28 27 31 31 H 0.96997 * 119.99687 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47271 * 54.85543 * 9 7 2 33 33 H 1.09004 * 109.46760 * 294.85501 * 9 7 2 34 34 H 0.97000 * 119.99944 * 98.67097 * 12 10 9 35 35 H 1.09001 * 109.47385 * 60.00082 * 15 13 12 36 36 H 1.08997 * 109.47334 * 299.99318 * 15 13 12 37 37 H 1.08002 * 120.00000 * 359.97438 * 26 25 10 38 38 H 1.07998 * 119.99687 * 180.22953 * 27 26 25 39 39 H 1.07997 * 119.99460 * 179.82898 * 28 27 26 40 40 H 1.08009 * 120.00190 * 179.97438 * 29 28 27 41 41 H 1.08002 * 119.99996 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2402 -3.6591 -0.1305 11 1 2.9963 -3.5811 0.6508 12 7 1.5240 -4.9296 0.0083 13 6 1.2214 -5.4022 1.2336 14 8 1.6195 -4.8233 2.2223 15 6 0.3884 -6.6500 1.3754 16 16 0.1576 -7.0252 3.1310 17 6 -0.8199 -8.4858 3.0059 18 7 -1.2073 -9.0475 1.8971 19 7 -1.9572 -10.1851 2.2259 20 1 -2.3704 -10.8011 1.6007 21 6 -2.0014 -10.2643 3.5720 22 8 -2.5673 -11.1236 4.2242 23 7 -1.3006 -9.2233 4.0640 24 1 -1.1597 -9.0270 5.0035 25 6 2.9059 -3.6028 -1.4813 26 6 2.2497 -4.0899 -2.5961 27 6 2.8587 -4.0345 -3.8359 28 6 4.1274 -3.4995 -3.9594 29 6 4.7857 -3.0172 -2.8437 30 6 4.1751 -3.0691 -1.6046 31 1 -0.4849 0.8400 0.0004 32 1 0.5568 -2.5179 -0.8406 33 1 0.6957 -2.5980 0.9322 34 1 1.2675 -5.4305 -0.7817 35 1 0.8965 -7.4832 0.8899 36 1 -0.5830 -6.4937 0.9063 37 1 1.2600 -4.5113 -2.4990 38 1 2.3445 -4.4117 -4.7074 39 1 4.6042 -3.4588 -4.9275 40 1 5.7771 -2.5996 -2.9401 41 1 4.6894 -2.6918 -0.7330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288104126.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:52 Heat of formation + Delta-G solvation = 1.747929 kcal Electronic energy + Delta-G solvation = -26651.534548 eV Core-core repulsion = 22658.424335 eV Total energy + Delta-G solvation = -3993.110213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.44272 -41.12169 -39.80153 -38.54868 -36.71451 -34.87070 -34.84359 -33.05051 -31.88692 -31.63107 -30.64104 -30.13787 -26.53372 -24.68028 -23.95822 -23.76926 -23.52037 -22.04998 -21.11004 -20.48929 -18.78753 -18.45460 -17.96715 -17.68375 -17.67317 -17.41563 -16.85504 -16.75255 -16.56460 -16.32743 -15.93488 -15.34346 -15.09306 -14.67387 -14.62930 -14.31370 -14.18011 -14.10900 -13.86212 -13.60260 -13.43001 -13.10268 -12.93113 -12.61233 -12.52804 -12.28455 -11.96228 -11.87292 -11.83270 -11.71387 -11.60389 -11.37702 -11.02392 -10.54088 -10.43899 -10.06195 -9.66554 -9.42239 -8.88336 -8.17279 -6.24552 -0.33667 0.52443 0.56926 0.62435 0.65166 1.19370 1.39211 1.40694 1.44870 1.51423 1.53901 2.19027 2.44253 2.74109 3.03619 3.18514 3.52119 3.67840 3.88866 4.01264 4.09824 4.28119 4.28515 4.30986 4.38998 4.55066 4.76383 4.84210 4.86822 5.18210 5.23967 5.26894 5.30870 5.50829 5.57666 5.69158 5.73602 5.74284 5.78286 5.93263 6.19371 6.23097 6.26465 6.50901 6.87867 6.91711 7.19752 7.42708 8.95046 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012414 B = 0.002487 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.906167 B =11257.148109 C =12784.493210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.037 3.963 10 C 0.200 3.800 11 H 0.065 0.935 12 N -0.703 5.703 13 C 0.527 3.473 14 O -0.568 6.568 15 C -0.144 4.144 16 S 0.108 5.892 17 C 0.247 3.753 18 N -0.286 5.286 19 N -0.531 5.531 20 H 0.467 0.533 21 C 0.651 3.349 22 O -0.590 6.590 23 N -0.626 5.626 24 H 0.454 0.546 25 C -0.074 4.074 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.130 4.130 29 C -0.125 4.125 30 C -0.121 4.121 31 H 0.261 0.739 32 H 0.005 0.995 33 H -0.015 1.015 34 H 0.414 0.586 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.167 -17.223 -3.997 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.080 0.920 9 C -0.001 4.001 10 C 0.096 3.904 11 H 0.083 0.917 12 N -0.356 5.356 13 C 0.312 3.688 14 O -0.447 6.447 15 C -0.296 4.296 16 S 0.333 5.667 17 C -0.140 4.140 18 N -0.117 5.117 19 N -0.284 5.284 20 H 0.318 0.682 21 C 0.346 3.654 22 O -0.467 6.467 23 N -0.280 5.280 24 H 0.299 0.701 25 C -0.074 4.074 26 C -0.146 4.146 27 C -0.138 4.138 28 C -0.148 4.148 29 C -0.143 4.143 30 C -0.139 4.139 31 H 0.070 0.930 32 H 0.023 0.977 33 H 0.003 0.997 34 H 0.252 0.748 35 H 0.177 0.823 36 H 0.166 0.834 37 H 0.148 0.852 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.157 0.843 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.298 -16.717 -3.022 17.305 hybrid contribution -0.799 0.160 -0.179 0.834 sum 2.500 -16.557 -3.201 17.048 Atomic orbital electron populations 1.70088 1.07561 1.27362 1.52189 1.25796 0.95609 1.02787 0.95148 0.85573 0.79443 0.79654 0.77520 1.18447 1.20515 1.20936 1.21452 0.93418 0.91484 1.49412 0.91986 1.19194 0.93824 0.92212 0.94878 1.19762 0.93710 0.82753 0.94213 0.91656 1.45939 1.58291 1.23182 1.08140 1.20034 0.80066 0.85204 0.83529 1.90774 1.54610 1.60978 1.38352 1.23812 1.06729 1.00515 0.98523 1.87036 1.57386 1.15435 1.06843 1.26526 1.00786 1.00610 0.86110 1.77513 1.15210 1.00052 1.18920 1.46607 1.50469 1.25356 1.05980 0.68165 1.16847 0.81832 0.82907 0.83861 1.91146 1.51791 1.39712 1.64018 1.43484 1.48979 1.24595 1.10961 0.70115 1.19757 0.94531 0.98698 0.94432 1.21075 0.99915 1.01051 0.92559 1.21396 0.95612 0.99518 0.97286 1.21443 0.95425 0.98741 0.99168 1.21354 1.00874 0.99846 0.92243 1.21083 0.94872 0.99332 0.98637 0.93035 0.97699 0.99659 0.74813 0.82321 0.83441 0.85211 0.83481 0.83540 0.84348 0.87091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 7 C -0.52 -28.35 8.53 25.60 0.22 -28.13 16 8 H 0.06 3.27 6.79 -2.91 -0.02 3.25 16 9 C 0.04 1.85 4.68 29.85 0.14 1.99 16 10 C 0.20 7.70 2.19 44.24 0.10 7.80 16 11 H 0.07 2.80 7.49 -2.39 -0.02 2.78 16 12 N -0.70 -20.44 5.05 -446.10 -2.25 -22.69 16 13 C 0.53 15.39 7.71 87.66 0.68 16.06 16 14 O -0.57 -22.13 15.56 -3.05 -0.05 -22.18 16 15 C -0.14 -2.64 5.67 71.24 0.40 -2.24 16 16 S 0.11 2.07 21.45 -56.49 -1.21 0.86 16 17 C 0.25 4.32 8.33 179.50 1.49 5.81 16 18 N -0.29 -5.05 11.98 -56.74 -0.68 -5.73 16 19 N -0.53 -9.12 7.39 -184.36 -1.36 -10.48 16 20 H 0.47 5.52 8.96 -213.27 -1.91 3.61 16 21 C 0.65 13.98 9.41 179.01 1.68 15.66 16 22 O -0.59 -16.82 18.06 -4.75 -0.09 -16.90 16 23 N -0.63 -10.60 6.09 -323.76 -1.97 -12.57 16 24 H 0.45 5.51 8.96 -92.70 -0.83 4.68 16 25 C -0.07 -2.50 4.50 -19.87 -0.09 -2.59 16 26 C -0.13 -3.61 9.02 22.27 0.20 -3.41 16 27 C -0.12 -2.86 10.05 22.27 0.22 -2.63 16 28 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 29 C -0.13 -3.35 10.05 22.27 0.22 -3.12 16 30 C -0.12 -3.97 8.83 22.27 0.20 -3.77 16 31 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 32 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 33 H -0.01 -0.85 8.08 -2.39 -0.02 -0.87 16 34 H 0.41 8.79 6.87 -92.71 -0.64 8.15 16 35 H 0.16 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.15 2.25 8.14 -2.40 -0.02 2.23 16 37 H 0.13 3.15 6.95 -2.91 -0.02 3.13 16 38 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 39 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 40 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 41 H 0.11 3.74 7.84 -2.91 -0.02 3.72 16 Total: -1.00 -78.56 373.04 -1.40 -79.97 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -2.26 Total: 19.78 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 6.16 Total: -0.65 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -5.98 Total: -106.88 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.13 Total: -39.09 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.21 Total: 0.86 kcal Total: -78.56 -1.40 -79.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288104126.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.714 kcal (2) G-P(sol) polarization free energy of solvation -78.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds