Wall clock time and date at job start Wed Apr 1 2020 04:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48500 * 109.47540 * 239.99801 * 3 2 1 5 5 H 1.48495 * 109.47476 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46849 * 120.00304 * 3 2 1 7 7 C 1.38949 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99832 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00273 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99771 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00159 * 179.97438 * 10 9 7 13 13 N 1.46907 * 109.46907 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99751 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47213 * 325.00214 * 14 13 12 16 16 C 1.53003 * 109.46952 * 85.00051 * 14 13 12 17 17 O 1.42898 * 109.47252 * 64.99993 * 16 14 13 18 18 C 1.50697 * 109.47123 * 204.99920 * 14 13 12 19 19 C 1.38165 * 120.02755 * 339.97821 * 18 14 13 20 20 C 1.38248 * 120.05352 * 180.02562 * 19 18 14 21 21 C 1.38282 * 120.11148 * 0.02944 * 20 19 18 22 22 C 1.38123 * 120.05864 * 359.95155 * 21 20 19 23 23 C 1.38715 * 120.02821 * 159.99992 * 18 14 13 24 24 O 1.35903 * 120.05514 * 359.70783 * 23 18 14 25 25 C 1.42895 * 117.00049 * 179.97438 * 24 23 18 26 26 F 1.39904 * 109.47169 * 59.99724 * 25 24 23 27 27 F 1.39902 * 109.47294 * 179.97438 * 25 24 23 28 28 F 1.39898 * 109.47379 * 299.99688 * 25 24 23 29 29 H 0.97000 * 119.99986 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00005 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.46958 * 60.00402 * 12 10 9 32 32 H 1.08999 * 109.47051 * 300.00060 * 12 10 9 33 33 H 1.00899 * 111.00268 * 56.04934 * 13 12 10 34 34 H 1.09007 * 109.47030 * 185.00347 * 16 14 13 35 35 H 1.09000 * 109.47359 * 304.99832 * 16 14 13 36 36 H 0.96701 * 113.99760 * 179.97438 * 17 16 14 37 37 H 1.07992 * 119.97399 * 0.02562 * 19 18 14 38 38 H 1.08000 * 119.94403 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.97448 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.02778 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6966 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0026 11 8 3.2103 -3.5578 -0.0031 12 6 1.2438 -4.8629 -0.0032 13 7 2.1985 -5.9795 -0.0037 14 6 1.4983 -7.2708 -0.0049 15 1 0.5848 -7.1893 0.5843 16 6 1.1451 -7.6581 -1.4424 17 8 2.3459 -7.8786 -2.1850 18 6 2.3905 -8.3267 0.5950 19 6 3.7558 -8.1238 0.6583 20 6 4.5749 -9.0923 1.2081 21 6 4.0305 -10.2664 1.6954 22 6 2.6663 -10.4738 1.6349 23 6 1.8420 -9.5032 1.0839 24 8 0.4988 -9.7028 1.0278 25 6 0.0041 -10.9377 1.5493 26 9 0.3435 -11.0419 2.9025 27 9 -1.3878 -10.9771 1.4137 28 9 0.5721 -12.0033 0.8428 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3907 -0.0016 31 1 0.6169 -4.9201 -0.8930 32 1 0.6175 -4.9213 0.8869 33 1 2.8334 -5.9128 0.7777 34 1 0.5487 -8.5705 -1.4368 35 1 0.5740 -6.8536 -1.9056 36 1 2.1977 -8.1286 -3.1073 37 1 4.1833 -7.2080 0.2779 38 1 5.6418 -8.9321 1.2562 39 1 4.6725 -11.0217 2.1241 40 1 2.2416 -11.3907 2.0160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361469903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:22 Heat of formation + Delta-G solvation = -240.990438 kcal Electronic energy + Delta-G solvation = -30897.287839 eV Core-core repulsion = 25876.749338 eV Total energy + Delta-G solvation = -5020.538501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.75087 -48.47074 -48.34409 -40.74378 -38.56294 -37.91954 -36.97848 -35.06672 -33.85346 -31.65577 -31.12757 -30.57558 -28.36285 -26.51551 -26.10427 -24.24955 -23.35855 -22.66864 -20.63851 -19.94437 -19.46513 -19.30501 -19.06858 -17.93342 -17.39551 -17.09724 -16.64319 -15.73911 -15.57937 -15.46640 -15.36973 -15.06598 -14.88061 -14.76937 -14.64578 -14.53666 -14.47710 -14.32259 -14.22388 -14.00283 -13.64587 -13.51276 -13.32771 -13.20926 -12.62573 -12.28122 -12.25033 -11.82928 -11.61970 -11.50386 -11.23795 -11.01327 -10.90451 -10.43607 -10.20600 -9.85631 -9.48973 -9.07584 -8.71929 -8.43239 -8.08883 -7.95084 -6.40749 -3.81542 1.03068 1.09431 1.20505 2.53146 3.20928 3.26528 3.30942 3.41938 3.47377 3.71220 3.90744 3.97556 4.22021 4.35246 4.42988 4.55712 4.73500 4.91138 5.06980 5.17001 5.24747 5.27813 5.32136 5.49492 5.53378 5.62097 5.76789 5.79990 5.86979 5.97210 6.05904 6.25050 6.34810 6.37881 6.74235 7.17652 7.55987 7.59450 7.79066 8.06976 8.62213 9.18731 9.55147 10.06630 10.76976 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.017105 B = 0.002397 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.566906 B =11680.671679 C =12284.774560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.581 6.581 12 C 0.048 3.952 13 N -0.652 5.652 14 C 0.130 3.870 15 H 0.069 0.931 16 C 0.096 3.904 17 O -0.551 6.551 18 C -0.075 4.075 19 C -0.056 4.056 20 C -0.134 4.134 21 C -0.085 4.085 22 C -0.194 4.194 23 C 0.101 3.899 24 O -0.309 6.309 25 C 0.603 3.397 26 F -0.166 7.166 27 F -0.133 7.133 28 F -0.166 7.166 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.352 0.648 34 H 0.043 0.957 35 H 0.051 0.949 36 H 0.370 0.630 37 H 0.154 0.846 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 -24.613 2.220 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.465 6.465 12 C -0.085 4.085 13 N -0.287 5.287 14 C 0.020 3.980 15 H 0.087 0.913 16 C 0.017 3.983 17 O -0.354 6.354 18 C -0.076 4.076 19 C -0.074 4.074 20 C -0.152 4.152 21 C -0.103 4.103 22 C -0.212 4.212 23 C 0.059 3.941 24 O -0.229 6.229 25 C 0.512 3.488 26 F -0.148 7.148 27 F -0.114 7.114 28 F -0.148 7.148 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.173 0.827 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.216 0.784 37 H 0.171 0.829 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.004 -24.173 2.074 24.262 hybrid contribution -1.130 0.286 0.500 1.269 sum -1.126 -23.887 2.575 24.052 Atomic orbital electron populations 1.69606 1.05935 1.28249 1.50600 1.25257 0.95628 0.99705 0.97328 0.85918 0.78759 0.80465 0.79080 1.19874 1.21002 1.19921 1.19656 0.93353 0.82230 1.47651 0.87952 1.41846 1.09181 1.04571 1.64427 1.19728 0.88365 0.84601 0.84497 1.90523 1.13690 1.87018 1.55300 1.21769 0.94422 0.91091 1.01177 1.60199 1.18400 0.98704 1.51353 1.20426 0.94886 0.88193 0.94533 0.91342 1.22074 0.86780 0.98294 0.91181 1.86609 1.30689 1.92143 1.25996 1.19137 0.94731 0.93065 1.00682 1.21154 0.91175 1.00058 0.94987 1.21278 1.00572 0.93855 0.99530 1.20933 0.93671 0.97529 0.98194 1.21376 0.95434 0.99230 1.05166 1.18470 0.78414 0.96169 1.01043 1.86414 1.24121 1.34439 1.77898 1.19371 0.76259 0.77986 0.75158 1.93300 1.92069 1.95668 1.33784 1.93310 1.26634 1.95789 1.95691 1.93296 1.84860 1.57804 1.78876 0.91834 0.77478 0.89594 0.93746 0.82650 0.93936 0.93079 0.78428 0.82890 0.85107 0.85269 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 10 C 0.44 10.43 7.82 -10.99 -0.09 10.35 16 11 O -0.58 -15.70 15.78 5.54 0.09 -15.61 16 12 C 0.05 0.85 5.96 -4.97 -0.03 0.82 16 13 N -0.65 -10.69 5.18 -109.22 -0.57 -11.26 16 14 C 0.13 1.76 2.29 -68.87 -0.16 1.60 16 15 H 0.07 0.89 7.51 -51.93 -0.39 0.50 16 16 C 0.10 1.18 6.79 37.16 0.25 1.44 16 17 O -0.55 -7.18 13.05 -35.23 -0.46 -7.64 16 18 C -0.08 -0.97 4.53 -104.47 -0.47 -1.44 16 19 C -0.06 -0.70 8.83 -39.60 -0.35 -1.05 16 20 C -0.13 -1.40 10.04 -39.56 -0.40 -1.79 16 21 C -0.09 -0.81 10.04 -39.61 -0.40 -1.21 16 22 C -0.19 -2.03 8.26 -39.44 -0.33 -2.36 16 23 C 0.10 1.21 6.45 -39.22 -0.25 0.96 16 24 O -0.31 -3.48 9.57 -19.43 -0.19 -3.66 16 25 C 0.60 5.79 3.42 101.05 0.35 6.14 16 26 F -0.17 -1.58 15.55 2.25 0.04 -1.55 16 27 F -0.13 -1.23 17.53 2.25 0.04 -1.19 16 28 F -0.17 -1.54 15.58 2.25 0.04 -1.51 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 9.49 7.90 -40.82 -0.32 9.16 16 31 H 0.09 1.40 7.36 -51.93 -0.38 1.02 16 32 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 33 H 0.35 5.94 6.68 -39.29 -0.26 5.68 16 34 H 0.04 0.47 8.11 -51.93 -0.42 0.05 16 35 H 0.05 0.63 7.35 -51.93 -0.38 0.24 16 36 H 0.37 3.20 9.12 45.56 0.42 3.62 16 37 H 0.15 2.12 6.70 -52.49 -0.35 1.77 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.13 1.19 5.10 -52.49 -0.27 0.92 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -32.20 356.55 -5.25 -37.45 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -3.14 Total: 16.27 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -2.11 Total: 5.44 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.10 Total: -49.43 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.56 Total: -26.92 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.11 Total: -4.25 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.20 -5.25 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361469903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.538 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds