Wall clock time and date at job start Wed Apr 1 2020 04:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48500 * 109.47540 * 239.99801 * 3 2 1 5 5 H 1.48495 * 109.47476 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46849 * 120.00304 * 3 2 1 7 7 C 1.38949 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99832 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00273 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99771 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00159 * 179.97438 * 10 9 7 13 13 N 1.46907 * 109.46907 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99751 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47213 * 325.00214 * 14 13 12 16 16 C 1.53003 * 109.46952 * 85.00051 * 14 13 12 17 17 O 1.42898 * 109.47252 * 64.99993 * 16 14 13 18 18 C 1.50697 * 109.47123 * 204.99920 * 14 13 12 19 19 C 1.38165 * 120.02755 * 339.97821 * 18 14 13 20 20 C 1.38248 * 120.05352 * 180.02562 * 19 18 14 21 21 C 1.38282 * 120.11148 * 0.02944 * 20 19 18 22 22 C 1.38123 * 120.05864 * 359.95155 * 21 20 19 23 23 C 1.38715 * 120.02821 * 159.99992 * 18 14 13 24 24 O 1.35903 * 120.05514 * 359.70783 * 23 18 14 25 25 C 1.42895 * 117.00049 * 179.97438 * 24 23 18 26 26 F 1.39904 * 109.47169 * 59.99724 * 25 24 23 27 27 F 1.39902 * 109.47294 * 179.97438 * 25 24 23 28 28 F 1.39898 * 109.47379 * 299.99688 * 25 24 23 29 29 H 0.97000 * 119.99986 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00005 * 359.97438 * 9 7 2 31 31 H 1.08993 * 109.46958 * 60.00402 * 12 10 9 32 32 H 1.08999 * 109.47051 * 300.00060 * 12 10 9 33 33 H 1.00899 * 111.00268 * 56.04934 * 13 12 10 34 34 H 1.09007 * 109.47030 * 185.00347 * 16 14 13 35 35 H 1.09000 * 109.47359 * 304.99832 * 16 14 13 36 36 H 0.96701 * 113.99760 * 179.97438 * 17 16 14 37 37 H 1.07992 * 119.97399 * 0.02562 * 19 18 14 38 38 H 1.08000 * 119.94403 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.97448 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.02778 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6966 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0026 11 8 3.2103 -3.5578 -0.0031 12 6 1.2438 -4.8629 -0.0032 13 7 2.1985 -5.9795 -0.0037 14 6 1.4983 -7.2708 -0.0049 15 1 0.5848 -7.1893 0.5843 16 6 1.1451 -7.6581 -1.4424 17 8 2.3459 -7.8786 -2.1850 18 6 2.3905 -8.3267 0.5950 19 6 3.7558 -8.1238 0.6583 20 6 4.5749 -9.0923 1.2081 21 6 4.0305 -10.2664 1.6954 22 6 2.6663 -10.4738 1.6349 23 6 1.8420 -9.5032 1.0839 24 8 0.4988 -9.7028 1.0278 25 6 0.0041 -10.9377 1.5493 26 9 0.3435 -11.0419 2.9025 27 9 -1.3878 -10.9771 1.4137 28 9 0.5721 -12.0033 0.8428 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3907 -0.0016 31 1 0.6169 -4.9201 -0.8930 32 1 0.6175 -4.9213 0.8869 33 1 2.8334 -5.9128 0.7777 34 1 0.5487 -8.5705 -1.4368 35 1 0.5740 -6.8536 -1.9056 36 1 2.1977 -8.1286 -3.1073 37 1 4.1833 -7.2080 0.2779 38 1 5.6418 -8.9321 1.2562 39 1 4.6725 -11.0217 2.1241 40 1 2.2416 -11.3907 2.0160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361469903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:21 Heat of formation + Delta-G solvation = -266.075177 kcal Electronic energy + Delta-G solvation = -30898.375595 eV Core-core repulsion = 25876.749338 eV Total energy + Delta-G solvation = -5021.626257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.49399 -49.20923 -49.08399 -41.61257 -40.18565 -39.04539 -37.98224 -36.33210 -35.76427 -33.30677 -32.61108 -31.41251 -29.45460 -27.90759 -27.06798 -25.91254 -24.31274 -23.56610 -21.63468 -21.17760 -20.63536 -20.21377 -19.97712 -19.84798 -18.42998 -18.25614 -17.62438 -17.18848 -16.63570 -16.46148 -16.36858 -16.30462 -15.85000 -15.82590 -15.69451 -15.52776 -15.50113 -15.37413 -15.23936 -15.10524 -14.88631 -14.72024 -14.40791 -14.24572 -13.84115 -13.78443 -13.43605 -13.27392 -13.00389 -12.82596 -12.64341 -12.42523 -12.19923 -12.12003 -11.85333 -11.49541 -10.80895 -10.35734 -10.01144 -9.93466 -9.56777 -9.36158 -8.45984 -5.94722 0.18890 0.24542 0.42287 1.40373 1.42228 1.53164 1.75850 2.05377 2.29020 2.59400 2.72188 2.78863 2.95117 3.21106 3.35778 3.44764 3.58293 3.73528 3.86249 4.15007 4.19726 4.34232 4.37378 4.39810 4.46008 4.50299 4.60097 4.65470 4.68713 4.91464 5.05393 5.25176 5.41217 5.45571 5.49897 5.87597 5.91875 6.08005 6.29482 6.60498 7.02354 7.12948 7.56358 8.11613 8.71266 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.017105 B = 0.002397 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.566906 B =11680.671679 C =12284.774560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.440 3.560 11 O -0.620 6.620 12 C 0.062 3.938 13 N -0.662 5.662 14 C 0.129 3.871 15 H 0.075 0.925 16 C 0.097 3.903 17 O -0.571 6.571 18 C -0.090 4.090 19 C -0.073 4.073 20 C -0.135 4.135 21 C -0.079 4.079 22 C -0.196 4.196 23 C 0.093 3.907 24 O -0.317 6.317 25 C 0.608 3.392 26 F -0.165 7.165 27 F -0.131 7.131 28 F -0.163 7.163 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.346 0.654 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.387 0.613 37 H 0.133 0.867 38 H 0.150 0.850 39 H 0.162 0.838 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.106 -25.862 2.569 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.228 3.772 11 O -0.506 6.506 12 C -0.070 4.070 13 N -0.296 5.296 14 C 0.020 3.980 15 H 0.092 0.908 16 C 0.018 3.982 17 O -0.377 6.377 18 C -0.091 4.091 19 C -0.091 4.091 20 C -0.153 4.153 21 C -0.096 4.096 22 C -0.214 4.214 23 C 0.051 3.949 24 O -0.237 6.237 25 C 0.517 3.483 26 F -0.147 7.147 27 F -0.112 7.112 28 F -0.145 7.145 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.167 0.833 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.236 0.764 37 H 0.150 0.850 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.258 -25.447 2.408 25.562 hybrid contribution -1.041 0.570 0.392 1.250 sum -1.299 -24.877 2.800 25.068 Atomic orbital electron populations 1.69668 1.06833 1.29361 1.50302 1.26035 0.96536 1.02390 0.96254 0.84996 0.77772 0.76651 0.78974 1.19724 1.19500 1.19651 1.19641 0.92740 0.84006 1.49993 0.90258 1.41906 1.09309 1.04660 1.65091 1.20736 0.88232 0.85983 0.82274 1.90492 1.15727 1.87890 1.56493 1.21626 0.94083 0.88288 1.03013 1.60202 1.18505 0.99570 1.51340 1.20495 0.94972 0.86910 0.95640 0.90751 1.22079 0.86661 0.98993 0.90442 1.86566 1.31350 1.92298 1.27523 1.19080 0.94774 0.93496 1.01750 1.21076 0.91576 1.00143 0.96283 1.21525 1.01410 0.93596 0.98731 1.21308 0.93706 0.97642 0.96975 1.21636 0.95848 0.99320 1.04613 1.18510 0.78818 0.96219 1.01358 1.86379 1.23943 1.35273 1.78113 1.19263 0.76265 0.77626 0.75124 1.93303 1.92069 1.95625 1.33671 1.93317 1.26460 1.95740 1.95682 1.93303 1.84824 1.57537 1.78825 0.91293 0.76992 0.87793 0.91558 0.83333 0.92328 0.93087 0.76442 0.84950 0.83185 0.82047 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.85 13.05 21.66 0.28 -49.57 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.33 -19.09 9.68 84.04 0.81 -18.27 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.57 -29.55 5.29 -306.98 -1.62 -31.17 16 10 C 0.44 21.14 7.82 87.66 0.69 21.82 16 11 O -0.62 -34.53 15.78 -3.08 -0.05 -34.58 16 12 C 0.06 2.17 5.96 85.56 0.51 2.68 16 13 N -0.66 -21.79 5.18 -499.46 -2.59 -24.37 16 14 C 0.13 3.43 2.29 44.17 0.10 3.53 16 15 H 0.07 1.86 7.51 -2.39 -0.02 1.84 16 16 C 0.10 2.30 6.79 71.98 0.49 2.79 16 17 O -0.57 -14.53 13.05 -148.98 -1.94 -16.47 16 18 C -0.09 -2.27 4.53 -19.77 -0.09 -2.36 16 19 C -0.07 -1.82 8.83 22.25 0.20 -1.62 16 20 C -0.13 -2.61 10.04 22.28 0.22 -2.38 16 21 C -0.08 -1.30 10.04 22.25 0.22 -1.07 16 22 C -0.20 -3.69 8.26 22.36 0.18 -3.50 16 23 C 0.09 2.10 6.45 22.51 0.15 2.24 16 24 O -0.32 -6.68 9.57 -92.45 -0.89 -7.56 16 25 C 0.61 10.64 3.42 113.37 0.39 11.03 16 26 F -0.16 -2.84 15.55 44.97 0.70 -2.14 16 27 F -0.13 -2.22 17.53 44.97 0.79 -1.43 16 28 F -0.16 -2.71 15.58 44.97 0.70 -2.01 16 29 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 30 H 0.40 19.40 7.90 -92.70 -0.73 18.67 16 31 H 0.10 3.28 7.36 -2.39 -0.02 3.26 16 32 H 0.07 2.04 8.06 -2.39 -0.02 2.02 16 33 H 0.35 12.00 6.68 -89.69 -0.60 11.40 16 34 H 0.06 1.20 8.11 -2.38 -0.02 1.18 16 35 H 0.05 1.19 7.35 -2.39 -0.02 1.17 16 36 H 0.39 6.36 9.12 -74.06 -0.68 5.69 16 37 H 0.13 3.83 6.70 -2.91 -0.02 3.81 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.14 2.26 5.10 -2.91 -0.01 2.24 16 Total: -1.00 -69.46 356.55 0.90 -68.56 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -0.85 Total: 40.97 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 4.34 Total: 14.69 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -3.93 Total: -105.11 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: -2.88 Total: -58.62 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 2.19 Total: -5.58 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -69.46 0.90 -68.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361469903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.511 kcal (2) G-P(sol) polarization free energy of solvation -69.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds