Wall clock time and date at job start Wed Apr 1 2020 04:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00333 * 2 1 4 4 H 1.48504 * 109.46828 * 270.45466 * 3 2 1 5 5 H 1.48505 * 109.47018 * 30.45113 * 3 2 1 6 6 H 1.48500 * 109.47399 * 150.45524 * 3 2 1 7 7 C 1.37882 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00056 * 357.18323 * 7 2 1 9 9 C 1.50693 * 119.99728 * 177.17927 * 7 2 1 10 10 C 1.53001 * 115.55226 * 85.19514 * 9 7 2 11 11 N 1.46507 * 109.47228 * 65.44267 * 10 9 7 12 12 C 1.34769 * 120.00192 * 175.17815 * 11 10 9 13 13 O 1.21585 * 119.99944 * 4.70046 * 12 11 10 14 14 C 1.47605 * 120.00191 * 184.70624 * 12 11 10 15 15 C 1.39709 * 120.10054 * 43.34311 * 14 12 11 16 16 C 1.38248 * 119.95539 * 179.97438 * 15 14 12 17 17 C 1.39302 * 119.96258 * 359.90797 * 16 15 14 18 18 C 1.38961 * 120.04155 * 359.97438 * 17 16 15 19 19 C 1.37764 * 120.27363 * 0.22895 * 18 17 16 20 20 N 1.48013 * 120.01902 * 179.83328 * 19 18 17 21 21 O 1.21800 * 120.00297 * 39.43948 * 20 19 18 22 22 O 1.21807 * 120.00324 * 219.43504 * 20 19 18 23 23 O 1.35964 * 120.71317 * 180.26255 * 17 16 15 24 24 C 1.43165 * 116.74516 * 342.75648 * 23 17 16 25 25 C 1.53476 * 108.25553 * 46.30780 * 24 23 17 26 26 O 1.36151 * 119.27707 * 179.86270 * 16 15 14 27 27 C 1.53004 * 117.49990 * 230.86094 * 9 7 2 28 28 C 1.53002 * 117.50197 * 299.52001 * 9 7 2 29 29 H 0.96999 * 119.99928 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47059 * 305.44162 * 10 9 7 31 31 H 1.08998 * 109.47611 * 185.44423 * 10 9 7 32 32 H 0.97001 * 119.99538 * 355.17385 * 11 10 9 33 33 H 1.08008 * 120.02462 * 359.97438 * 15 14 12 34 34 H 1.08008 * 119.86808 * 179.86575 * 18 17 16 35 35 H 1.08998 * 109.71134 * 286.61543 * 24 23 17 36 36 H 1.09003 * 109.70047 * 165.98991 * 24 23 17 37 37 H 1.08999 * 109.71301 * 180.47305 * 25 24 23 38 38 H 1.09002 * 109.71745 * 59.82920 * 25 24 23 39 39 H 1.08997 * 117.50357 * 215.00071 * 27 9 7 40 40 H 1.08994 * 117.49479 * 0.02786 * 27 9 7 41 41 H 1.09000 * 117.49810 * 359.97438 * 28 9 7 42 42 H 1.09003 * 117.49447 * 144.97236 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4872 2.0519 -1.4001 5 1 1.4515 2.6499 0.7096 6 1 3.5516 1.4373 0.6904 7 6 2.0045 -1.1941 0.0005 8 1 1.4655 -2.1288 0.0469 9 6 3.5101 -1.1950 -0.0637 10 6 4.2280 -1.0453 1.2791 11 7 3.9554 -2.2192 2.1122 12 6 4.5642 -2.3537 3.3070 13 8 5.2730 -1.4619 3.7319 14 6 4.3707 -3.5838 4.0996 15 6 4.4101 -4.8330 3.4753 16 6 4.2291 -5.9832 4.2207 17 6 4.0095 -5.8953 5.5935 18 6 3.9729 -4.6524 6.2139 19 6 4.1485 -3.5024 5.4760 20 7 4.1047 -2.1813 6.1421 21 8 4.6136 -2.0351 7.2390 22 8 3.5599 -1.2402 5.5933 23 8 3.8348 -7.0168 6.3420 24 6 3.5091 -8.2186 5.6356 25 6 4.4548 -8.3409 4.4331 26 8 4.2674 -7.1933 3.5977 27 6 4.1715 -2.0781 -1.1237 28 6 4.1653 -0.5564 -1.2901 29 1 -0.4850 0.8400 -0.0004 30 1 3.8688 -0.1492 1.7852 31 1 5.3015 -0.9613 1.1099 32 1 3.3365 -2.8995 1.8038 33 1 4.5819 -4.9002 2.4111 34 1 3.8003 -4.5874 7.2781 35 1 2.4769 -8.1727 5.2882 36 1 3.6382 -9.0781 6.2935 37 1 4.2215 -9.2459 3.8723 38 1 5.4876 -8.3784 4.7798 39 1 5.1181 -2.5524 -0.8645 40 1 3.5176 -2.6581 -1.7748 41 1 3.5073 -0.1361 -2.0506 42 1 5.1075 -0.0293 -1.1400 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431170282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:28 Heat of formation + Delta-G solvation = -44.833302 kcal Electronic energy + Delta-G solvation = -30928.622379 eV Core-core repulsion = 26458.446630 eV Total energy + Delta-G solvation = -4470.175749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.29683 -41.68432 -39.70504 -38.00271 -37.90888 -37.01476 -36.25870 -33.72899 -32.21719 -32.14447 -31.71983 -29.67310 -27.44451 -26.36197 -25.30336 -24.84695 -23.74920 -22.05017 -21.69964 -20.54670 -19.72490 -19.30297 -18.87121 -18.56388 -17.96923 -17.71344 -16.94014 -16.62363 -16.37626 -15.78064 -15.64280 -15.23154 -15.15609 -15.04864 -14.83347 -14.64274 -14.19184 -13.96405 -13.45750 -13.33212 -12.94546 -12.80737 -12.43258 -12.30410 -11.90334 -11.74461 -11.37863 -11.33753 -11.15768 -10.98398 -10.84398 -10.73679 -10.57147 -10.22047 -9.95131 -9.63937 -9.52424 -9.24699 -8.93520 -8.70335 -8.61656 -8.41779 -6.16388 -4.22027 -0.20346 0.31413 1.10756 1.33622 2.20833 2.44515 2.59107 3.04962 3.31104 3.38103 3.42513 3.44127 3.47752 3.84087 4.16571 4.22089 4.23522 4.40989 4.47918 4.50944 4.68814 4.80286 4.85627 4.96253 5.04413 5.11796 5.22686 5.36392 5.49441 5.62451 5.97011 6.02473 6.09542 6.15870 6.37668 6.43654 6.45711 6.59537 6.67261 6.86676 6.98598 7.03967 7.65464 7.78443 7.86991 8.37833 8.43473 8.82526 9.46686 10.94752 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.003446 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.166154 B = 8124.279490 C = 9253.342846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.083 3.917 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.255 1.255 7 C -0.495 4.495 8 H 0.078 0.922 9 C -0.017 4.017 10 C 0.152 3.848 11 N -0.682 5.682 12 C 0.548 3.452 13 O -0.528 6.528 14 C -0.056 4.056 15 C -0.079 4.079 16 C 0.094 3.906 17 C 0.071 3.929 18 C -0.062 4.062 19 C 0.009 3.991 20 N 0.028 4.972 21 O -0.162 6.162 22 O -0.108 6.108 23 O -0.295 6.295 24 C 0.018 3.982 25 C 0.017 3.983 26 O -0.292 6.292 27 C -0.178 4.178 28 C -0.190 4.190 29 H 0.266 0.734 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.408 0.592 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.086 0.914 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.508 -19.827 9.249 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.120 4.120 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.179 1.179 7 C -0.532 4.532 8 H 0.096 0.904 9 C -0.018 4.018 10 C 0.029 3.971 11 N -0.330 5.330 12 C 0.331 3.669 13 O -0.406 6.406 14 C -0.061 4.061 15 C -0.098 4.098 16 C 0.047 3.953 17 C 0.024 3.976 18 C -0.082 4.082 19 C -0.075 4.075 20 N 0.554 4.446 21 O -0.376 6.376 22 O -0.335 6.335 23 O -0.209 6.209 24 C -0.057 4.057 25 C -0.059 4.059 26 O -0.205 6.205 27 C -0.216 4.216 28 C -0.228 4.228 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.243 0.757 33 H 0.184 0.816 34 H 0.181 0.819 35 H 0.105 0.895 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.890 -19.827 9.229 23.607 hybrid contribution -0.025 0.607 0.014 0.608 sum 8.865 -19.220 9.243 23.096 Atomic orbital electron populations 1.69878 1.06433 1.27394 1.49188 1.24947 0.94564 0.99186 0.93346 0.86899 0.80967 0.83331 0.78408 1.20415 1.21770 1.17895 1.20148 0.85985 0.94558 1.52486 0.90424 1.19603 0.95537 1.00870 0.85787 1.21372 0.97392 0.87197 0.91097 1.45750 1.44338 1.25671 1.17262 1.17694 0.81898 0.85333 0.81969 1.90861 1.39631 1.40286 1.69801 1.19700 0.99926 0.95511 0.90993 1.20549 1.00433 0.87195 1.01651 1.18908 0.99114 0.87006 0.90248 1.18493 1.02419 0.87437 0.89205 1.19813 0.99637 0.86941 1.01766 1.20458 1.11411 0.83896 0.91702 1.43179 0.98856 1.02093 1.00446 1.94511 1.46585 1.89842 1.06615 1.94674 1.41784 1.31043 1.66033 1.86324 1.85432 1.15386 1.33795 1.23817 0.99758 0.86598 0.95575 1.23824 1.00663 0.88308 0.93061 1.86433 1.87530 1.12013 1.34562 1.22834 1.00892 0.92738 1.05109 1.22965 1.01375 0.95465 1.02969 0.92390 0.90832 0.93201 0.75692 0.81563 0.81856 0.89533 0.85120 0.85043 0.89653 0.90938 0.89354 0.89031 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.88 21.35 25.07 -169.99 -4.26 17.09 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.25 -5.97 5.55 56.52 0.31 -5.65 16 7 C -0.49 -12.73 9.18 -34.44 -0.32 -13.05 16 8 H 0.08 2.15 8.06 -52.49 -0.42 1.72 16 9 C -0.02 -0.36 0.84 -155.66 -0.13 -0.49 16 10 C 0.15 3.15 5.09 -4.04 -0.02 3.13 16 11 N -0.68 -12.55 5.40 -61.32 -0.33 -12.88 16 12 C 0.55 10.18 6.29 -12.44 -0.08 10.10 16 13 O -0.53 -11.67 15.09 -16.00 -0.24 -11.91 16 14 C -0.06 -0.85 5.71 -104.99 -0.60 -1.45 16 15 C -0.08 -0.92 9.35 -39.03 -0.36 -1.28 16 16 C 0.09 0.97 6.48 -39.18 -0.25 0.72 16 17 C 0.07 0.74 6.51 -38.92 -0.25 0.48 16 18 C -0.06 -0.74 9.58 -39.49 -0.38 -1.12 16 19 C 0.01 0.13 6.44 -79.59 -0.51 -0.38 16 20 N 0.03 0.50 3.93 34.14 0.13 0.64 16 21 O -0.16 -2.89 18.98 -29.46 -0.56 -3.45 16 22 O -0.11 -2.26 16.52 -36.26 -0.60 -2.86 16 23 O -0.30 -2.49 10.41 -32.35 -0.34 -2.82 16 24 C 0.02 0.08 7.26 37.40 0.27 0.35 16 25 C 0.02 0.07 7.26 37.40 0.27 0.34 16 26 O -0.29 -2.49 10.42 -32.95 -0.34 -2.84 16 27 C -0.18 -3.26 9.96 -26.69 -0.27 -3.53 16 28 C -0.19 -3.77 7.74 -26.69 -0.21 -3.98 16 29 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.07 1.72 6.28 -51.93 -0.33 1.40 16 31 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.41 6.86 8.08 -40.82 -0.33 6.53 16 33 H 0.17 1.66 8.06 -52.48 -0.42 1.23 16 34 H 0.16 1.67 8.03 -52.48 -0.42 1.25 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.13 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.13 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 41 H 0.09 1.92 7.52 -51.93 -0.39 1.53 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -34.01 362.13 -8.16 -42.17 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.92 Total: 4.83 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.94 Total: -7.96 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.58 Total: -37.71 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -2.08 Total: -23.88 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.26 Total: 17.09 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.01 -8.16 -42.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431170282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.663 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds