Wall clock time and date at job start Wed Apr 1 2020 05:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00588 * 2 1 4 4 H 1.48497 * 109.47311 * 265.00066 * 3 2 1 5 5 H 1.48507 * 109.47055 * 24.99485 * 3 2 1 6 6 H 1.48498 * 109.47385 * 144.99557 * 3 2 1 7 7 C 1.37881 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99941 * 185.06818 * 7 2 1 9 9 C 1.50696 * 120.00128 * 5.06310 * 7 2 1 10 10 O 1.42897 * 110.87578 * 60.74913 * 9 7 2 11 11 C 1.55140 * 110.99036 * 296.90595 * 9 7 2 12 12 C 1.54316 * 103.02121 * 206.25628 * 11 9 7 13 13 N 1.47441 * 107.23348 * 22.28209 * 12 11 9 14 14 C 1.46899 * 111.00196 * 123.25976 * 13 12 11 15 15 C 1.50706 * 109.47269 * 69.87166 * 14 13 12 16 16 C 1.35371 * 126.72695 * 94.70962 * 15 14 13 17 17 N 1.36109 * 106.05068 * 179.91122 * 16 15 14 18 18 C 1.40266 * 125.94388 * 180.16472 * 17 16 15 19 19 C 1.38814 * 120.05471 * 359.97438 * 18 17 16 20 20 C 1.38117 * 119.95255 * 179.74277 * 19 18 17 21 21 C 1.38389 * 120.04386 * 0.52605 * 20 19 18 22 22 Cl 1.73603 * 119.94094 * 179.70068 * 21 20 19 23 23 C 1.38380 * 120.10772 * 359.72619 * 21 20 19 24 24 C 1.38110 * 120.05562 * 0.02562 * 23 21 20 25 25 N 1.28731 * 108.11218 * 0.36607 * 17 16 15 26 26 N 1.28604 * 110.23808 * 359.76490 * 25 17 16 27 27 C 1.47843 * 108.56644 * 0.99320 * 13 12 11 28 28 H 0.97002 * 119.99645 * 0.02562 * 1 2 3 29 29 H 0.96696 * 113.99906 * 290.77238 * 10 9 7 30 30 H 1.08995 * 110.70853 * 87.86868 * 11 9 7 31 31 H 1.09002 * 110.85899 * 324.70599 * 11 9 7 32 32 H 1.09000 * 109.88702 * 262.87532 * 12 11 9 33 33 H 1.09002 * 109.89556 * 141.68962 * 12 11 9 34 34 H 1.08994 * 109.47756 * 189.87796 * 14 13 12 35 35 H 1.09006 * 109.46867 * 309.87816 * 14 13 12 36 36 H 1.08007 * 126.97784 * 0.04074 * 16 15 14 37 37 H 1.08001 * 120.02492 * 359.96836 * 19 18 17 38 38 H 1.07995 * 119.97480 * 180.25547 * 20 19 18 39 39 H 1.07998 * 119.97415 * 179.97438 * 23 21 20 40 40 H 1.07997 * 120.03015 * 179.97438 * 24 23 21 41 41 H 1.09001 * 110.37845 * 94.73201 * 27 13 12 42 42 H 1.09001 * 110.37641 * 217.07559 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6025 1.9853 -1.3947 5 1 1.3979 2.6809 0.5916 6 1 3.4900 1.4728 0.8031 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1960 0.0832 9 6 1.2554 -2.4967 -0.1141 10 8 0.5274 -2.5591 -1.3421 11 6 0.3139 -2.7051 1.1013 12 6 0.1885 -4.2409 1.1847 13 7 1.3636 -4.8127 0.5019 14 6 2.1118 -5.7036 1.3988 15 6 1.3061 -6.9514 1.6544 16 6 1.4002 -8.1262 0.9885 17 7 0.4875 -8.9577 1.5615 18 6 0.2389 -10.2876 1.1915 19 6 0.9559 -10.8660 0.1531 20 6 0.7131 -12.1774 -0.2060 21 6 -0.2519 -12.9112 0.4614 22 17 -0.5604 -14.5568 0.0027 23 6 -0.9717 -12.3351 1.4934 24 6 -0.7288 -11.0257 1.8594 25 7 -0.1107 -8.3098 2.4993 26 7 0.3538 -7.1133 2.5797 27 6 2.2165 -3.7036 0.0243 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2208 -1.9483 -1.3872 30 1 -0.6587 -2.2484 0.9181 31 1 0.7606 -2.3049 2.0114 32 1 -0.7247 -4.5660 0.6862 33 1 0.1763 -4.5559 2.2281 34 1 3.0609 -5.9725 0.9352 35 1 2.3005 -5.1932 2.3433 36 1 2.0660 -8.3577 0.1701 37 1 1.7058 -10.2922 -0.3712 38 1 1.2736 -12.6290 -1.0110 39 1 -1.7246 -12.9096 2.0124 40 1 -1.2911 -10.5764 2.6646 41 1 2.9978 -3.4851 0.7522 42 1 2.6557 -3.9516 -0.9420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:11 Heat of formation + Delta-G solvation = 87.753854 kcal Electronic energy + Delta-G solvation = -27037.612212 eV Core-core repulsion = 23046.187789 eV Total energy + Delta-G solvation = -3991.424423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.53474 -39.92846 -38.36393 -37.12097 -35.21811 -34.37827 -32.29998 -32.11594 -31.59318 -30.10693 -29.28010 -28.06024 -26.00781 -24.60008 -24.16468 -23.45021 -21.77418 -21.09098 -19.87756 -19.53486 -18.71764 -17.23717 -16.96717 -16.63834 -15.93669 -15.65136 -15.22324 -14.85250 -14.81378 -14.51528 -14.22941 -14.11323 -14.04208 -13.83334 -13.04381 -12.77337 -12.58133 -12.39960 -12.28083 -12.10540 -11.79955 -11.50291 -11.38661 -11.28361 -11.17203 -10.98159 -10.86431 -10.83379 -10.69463 -10.38450 -10.24096 -9.79822 -9.78556 -9.39180 -9.14500 -8.88557 -8.57386 -8.04127 -7.63192 -6.17094 -4.24641 0.05099 0.56285 1.50555 1.65798 2.01897 2.47070 2.99572 3.25189 3.31814 3.34013 3.91144 4.09290 4.22955 4.32691 4.46052 4.50704 4.72131 4.84734 4.90183 4.98404 5.10595 5.16223 5.27802 5.29040 5.52321 5.53929 5.74269 5.81483 5.88853 5.93176 5.99364 6.09662 6.21790 6.23964 6.53850 6.56648 6.69864 6.91311 7.12170 7.42166 7.53724 7.64500 7.72946 7.85590 8.21360 8.37655 8.76674 9.43283 9.50593 10.89875 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.032968 B = 0.001802 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.099110 B =15537.426281 C =15721.836396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.252 3.748 10 O -0.578 6.578 11 C -0.143 4.143 12 C 0.044 3.956 13 N -0.524 5.524 14 C 0.130 3.870 15 C 0.013 3.987 16 C -0.035 4.035 17 N -0.255 5.255 18 C 0.140 3.860 19 C -0.108 4.108 20 C -0.087 4.087 21 C -0.035 4.035 22 Cl -0.060 7.060 23 C -0.089 4.089 24 C -0.092 4.092 25 N -0.083 5.083 26 N -0.245 5.245 27 C 0.059 3.941 28 H 0.265 0.735 29 H 0.374 0.626 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.194 0.806 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.049 0.951 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.092 -26.404 1.577 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.212 3.788 10 O -0.385 6.385 11 C -0.182 4.182 12 C -0.084 4.084 13 N -0.249 5.249 14 C -0.001 4.001 15 C -0.123 4.123 16 C -0.182 4.182 17 N -0.042 5.042 18 C 0.048 3.952 19 C -0.129 4.129 20 C -0.106 4.106 21 C -0.063 4.063 22 Cl -0.031 7.031 23 C -0.108 4.108 24 C -0.113 4.113 25 N -0.061 5.061 26 N -0.113 5.113 27 C -0.068 4.068 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.211 0.789 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.170 0.830 41 H 0.067 0.933 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.145 -27.177 2.118 27.260 hybrid contribution 0.963 1.647 -0.061 1.909 sum 1.108 -25.530 2.057 25.637 Atomic orbital electron populations 1.69788 1.05943 1.27301 1.50090 1.24990 0.94954 0.99372 0.93711 0.86513 0.79736 0.82768 0.78363 1.20406 1.21228 1.19924 1.21497 0.93766 0.90839 1.51258 0.92144 1.19530 0.87433 0.90584 0.81299 1.86154 1.47819 1.65211 1.39296 1.23281 1.02532 0.91763 1.00664 1.22856 0.93081 0.96177 0.96270 1.63624 1.07672 1.18769 1.34845 1.20499 0.94159 0.88643 0.96758 1.22019 0.98760 0.96374 0.95163 1.23498 0.99627 0.91204 1.03883 1.44595 1.25890 1.09666 1.24055 1.17733 0.99002 0.80818 0.97615 1.20916 1.00412 0.95336 0.96213 1.20923 0.96965 0.92844 0.99908 1.21067 0.99346 0.87331 0.98543 1.98398 1.95065 1.17914 1.91720 1.20998 0.99489 0.94351 0.95985 1.20976 0.96638 0.93332 1.00305 1.78328 1.18989 1.00851 1.07908 1.75088 1.09237 1.07028 1.19913 1.23014 0.95102 0.89727 0.98918 0.92467 0.77759 0.90490 0.92506 0.92278 0.93297 0.89353 0.92765 0.78878 0.83559 0.83451 0.83521 0.82970 0.93257 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.02 10.85 55.43 0.60 -23.42 16 2 C 0.07 1.93 5.32 -17.82 -0.09 1.83 16 3 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.54 -14.29 8.26 -34.44 -0.28 -14.57 16 8 H 0.06 1.59 7.79 -52.48 -0.41 1.18 16 9 C 0.25 6.23 0.86 -89.63 -0.08 6.16 16 10 O -0.58 -15.12 13.14 -35.23 -0.46 -15.58 16 11 C -0.14 -3.37 5.33 -24.91 -0.13 -3.51 16 12 C 0.04 0.91 6.39 -2.84 -0.02 0.89 16 13 N -0.52 -10.10 5.15 -232.69 -1.20 -11.29 16 14 C 0.13 2.02 5.11 -4.97 -0.03 1.99 16 15 C 0.01 0.19 6.22 -82.77 -0.51 -0.32 16 16 C -0.03 -0.42 10.85 -16.68 -0.18 -0.60 16 17 N -0.25 -3.17 3.56 -10.47 -0.04 -3.21 16 18 C 0.14 1.34 6.68 -83.56 -0.56 0.78 16 19 C -0.11 -0.76 9.46 -39.41 -0.37 -1.13 16 20 C -0.09 -0.52 9.82 -39.57 -0.39 -0.91 16 21 C -0.04 -0.23 6.32 -39.47 -0.25 -0.48 16 22 Cl -0.06 -0.38 28.95 -51.86 -1.50 -1.88 16 23 C -0.09 -0.59 9.82 -39.58 -0.39 -0.98 16 24 C -0.09 -0.77 9.62 -39.41 -0.38 -1.15 16 25 N -0.08 -1.27 12.41 60.35 0.75 -0.52 16 26 N -0.24 -4.15 11.81 33.29 0.39 -3.76 16 27 C 0.06 1.25 5.86 -2.30 -0.01 1.24 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.37 9.82 7.71 45.56 0.35 10.17 16 30 H 0.08 1.93 7.47 -51.93 -0.39 1.54 16 31 H 0.06 1.37 8.04 -51.93 -0.42 0.95 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.05 0.98 6.84 -51.93 -0.35 0.63 16 34 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 35 H 0.05 0.87 7.96 -51.93 -0.41 0.45 16 36 H 0.19 1.58 7.11 -52.48 -0.37 1.20 16 37 H 0.15 0.74 6.77 -52.49 -0.36 0.39 16 38 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.15 1.27 7.69 -52.49 -0.40 0.87 16 41 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 42 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 366.49 15.07 5.52 5.52 Total: -1.00 -30.65 366.49 -9.04 -39.69 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -4.41 Total: 9.52 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -3.68 Total: -10.76 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.51 Total: -42.20 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.46 Total: -15.58 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.65 -9.04 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.440 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds