Wall clock time and date at job start Wed Apr 1 2020 05:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00588 * 2 1 4 4 H 1.48497 * 109.47311 * 265.00066 * 3 2 1 5 5 H 1.48507 * 109.47055 * 24.99485 * 3 2 1 6 6 H 1.48498 * 109.47385 * 144.99557 * 3 2 1 7 7 C 1.37881 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99941 * 185.06818 * 7 2 1 9 9 C 1.50696 * 120.00128 * 5.06310 * 7 2 1 10 10 O 1.42897 * 110.87578 * 60.74913 * 9 7 2 11 11 C 1.55140 * 110.99036 * 296.90595 * 9 7 2 12 12 C 1.54316 * 103.02121 * 206.25628 * 11 9 7 13 13 N 1.47441 * 107.23348 * 22.28209 * 12 11 9 14 14 C 1.46899 * 111.00196 * 123.25976 * 13 12 11 15 15 C 1.50706 * 109.47269 * 69.87166 * 14 13 12 16 16 C 1.35371 * 126.72695 * 94.70962 * 15 14 13 17 17 N 1.36109 * 106.05068 * 179.91122 * 16 15 14 18 18 C 1.40266 * 125.94388 * 180.16472 * 17 16 15 19 19 C 1.38814 * 120.05471 * 359.97438 * 18 17 16 20 20 C 1.38117 * 119.95255 * 179.74277 * 19 18 17 21 21 C 1.38389 * 120.04386 * 0.52605 * 20 19 18 22 22 Cl 1.73603 * 119.94094 * 179.70068 * 21 20 19 23 23 C 1.38380 * 120.10772 * 359.72619 * 21 20 19 24 24 C 1.38110 * 120.05562 * 0.02562 * 23 21 20 25 25 N 1.28731 * 108.11218 * 0.36607 * 17 16 15 26 26 N 1.28604 * 110.23808 * 359.76490 * 25 17 16 27 27 C 1.47843 * 108.56644 * 0.99320 * 13 12 11 28 28 H 0.97002 * 119.99645 * 0.02562 * 1 2 3 29 29 H 0.96696 * 113.99906 * 290.77238 * 10 9 7 30 30 H 1.08995 * 110.70853 * 87.86868 * 11 9 7 31 31 H 1.09002 * 110.85899 * 324.70599 * 11 9 7 32 32 H 1.09000 * 109.88702 * 262.87532 * 12 11 9 33 33 H 1.09002 * 109.89556 * 141.68962 * 12 11 9 34 34 H 1.08994 * 109.47756 * 189.87796 * 14 13 12 35 35 H 1.09006 * 109.46867 * 309.87816 * 14 13 12 36 36 H 1.08007 * 126.97784 * 0.04074 * 16 15 14 37 37 H 1.08001 * 120.02492 * 359.96836 * 19 18 17 38 38 H 1.07995 * 119.97480 * 180.25547 * 20 19 18 39 39 H 1.07998 * 119.97415 * 179.97438 * 23 21 20 40 40 H 1.07997 * 120.03015 * 179.97438 * 24 23 21 41 41 H 1.09001 * 110.37845 * 94.73201 * 27 13 12 42 42 H 1.09001 * 110.37641 * 217.07559 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6025 1.9853 -1.3947 5 1 1.3979 2.6809 0.5916 6 1 3.4900 1.4728 0.8031 7 6 2.0045 -1.1941 0.0005 8 1 3.0814 -1.1960 0.0832 9 6 1.2554 -2.4967 -0.1141 10 8 0.5274 -2.5591 -1.3421 11 6 0.3139 -2.7051 1.1013 12 6 0.1885 -4.2409 1.1847 13 7 1.3636 -4.8127 0.5019 14 6 2.1118 -5.7036 1.3988 15 6 1.3061 -6.9514 1.6544 16 6 1.4002 -8.1262 0.9885 17 7 0.4875 -8.9577 1.5615 18 6 0.2389 -10.2876 1.1915 19 6 0.9559 -10.8660 0.1531 20 6 0.7131 -12.1774 -0.2060 21 6 -0.2519 -12.9112 0.4614 22 17 -0.5604 -14.5568 0.0027 23 6 -0.9717 -12.3351 1.4934 24 6 -0.7288 -11.0257 1.8594 25 7 -0.1107 -8.3098 2.4993 26 7 0.3538 -7.1133 2.5797 27 6 2.2165 -3.7036 0.0243 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2208 -1.9483 -1.3872 30 1 -0.6587 -2.2484 0.9181 31 1 0.7606 -2.3049 2.0114 32 1 -0.7247 -4.5660 0.6862 33 1 0.1763 -4.5559 2.2281 34 1 3.0609 -5.9725 0.9352 35 1 2.3005 -5.1932 2.3433 36 1 2.0660 -8.3577 0.1701 37 1 1.7058 -10.2922 -0.3712 38 1 1.2736 -12.6290 -1.0110 39 1 -1.7246 -12.9096 2.0124 40 1 -1.2911 -10.5764 2.6646 41 1 2.9978 -3.4851 0.7522 42 1 2.6557 -3.9516 -0.9420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:10 Heat of formation + Delta-G solvation = 66.902508 kcal Electronic energy + Delta-G solvation = -27038.516394 eV Core-core repulsion = 23046.187789 eV Total energy + Delta-G solvation = -3992.328605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.52550 -40.54227 -40.04134 -37.67309 -36.76241 -35.46374 -34.16592 -33.37739 -32.36822 -30.95073 -30.66377 -29.85691 -27.50895 -25.83924 -25.38287 -24.25121 -22.67062 -22.16353 -21.38504 -21.31837 -19.54382 -18.93022 -17.80848 -17.67807 -16.99867 -16.81704 -16.61295 -16.35254 -16.13456 -15.83739 -15.50405 -15.11608 -14.71659 -14.69910 -14.35854 -14.26433 -13.89444 -13.54176 -13.40386 -13.16311 -13.04840 -13.00868 -12.84401 -12.72595 -12.61438 -12.39441 -12.22828 -12.19879 -11.96915 -11.89966 -11.68261 -11.59200 -11.08671 -10.60968 -10.37352 -10.30757 -10.04436 -9.58632 -9.18616 -8.18147 -6.33080 -0.62672 0.05054 0.82400 0.96375 1.22782 1.35565 1.42467 1.44396 1.52655 2.40483 2.41119 3.05938 3.09164 3.32158 3.42960 3.63006 3.74954 3.89893 3.95556 4.04504 4.07860 4.13550 4.24941 4.33661 4.43410 4.48799 4.58016 4.71417 4.72012 4.78359 4.81184 4.94480 4.99112 5.00441 5.11145 5.20118 5.29134 5.32971 5.47110 5.56883 5.73840 5.81806 5.96234 6.22591 6.25865 6.72752 7.33862 7.37851 7.43848 8.87073 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.032968 B = 0.001802 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.099110 B =15537.426281 C =15721.836396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.028 3.972 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.557 4.557 8 H 0.060 0.940 9 C 0.234 3.766 10 O -0.585 6.585 11 C -0.134 4.134 12 C 0.061 3.939 13 N -0.524 5.524 14 C 0.133 3.867 15 C -0.014 4.014 16 C -0.015 4.015 17 N -0.245 5.245 18 C 0.106 3.894 19 C -0.098 4.098 20 C -0.083 4.083 21 C -0.035 4.035 22 Cl -0.055 7.055 23 C -0.089 4.089 24 C -0.100 4.100 25 N -0.109 5.109 26 N -0.286 5.286 27 C 0.069 3.931 28 H 0.266 0.734 29 H 0.368 0.632 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.123 0.877 35 H 0.047 0.953 36 H 0.237 0.763 37 H 0.171 0.829 38 H 0.174 0.826 39 H 0.163 0.837 40 H 0.143 0.857 41 H 0.059 0.941 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 -28.419 0.479 28.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.595 4.595 8 H 0.078 0.922 9 C 0.194 3.806 10 O -0.392 6.392 11 C -0.174 4.174 12 C -0.067 4.067 13 N -0.249 5.249 14 C 0.003 3.997 15 C -0.152 4.152 16 C -0.164 4.164 17 N -0.032 5.032 18 C 0.015 3.985 19 C -0.119 4.119 20 C -0.102 4.102 21 C -0.063 4.063 22 Cl -0.026 7.026 23 C -0.108 4.108 24 C -0.120 4.120 25 N -0.086 5.086 26 N -0.153 5.153 27 C -0.058 4.058 28 H 0.075 0.925 29 H 0.216 0.784 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.141 0.859 35 H 0.065 0.935 36 H 0.254 0.746 37 H 0.188 0.812 38 H 0.191 0.809 39 H 0.181 0.819 40 H 0.161 0.839 41 H 0.078 0.922 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.843 -29.232 1.039 29.308 hybrid contribution 0.398 2.086 0.237 2.137 sum 2.241 -27.146 1.276 27.268 Atomic orbital electron populations 1.69894 1.06972 1.27918 1.50299 1.25724 0.95776 1.02390 0.93417 0.85560 0.78663 0.78986 0.78303 1.20182 1.21032 1.19290 1.21814 0.93968 0.92113 1.51646 0.92206 1.19797 0.88109 0.91794 0.80909 1.86145 1.47726 1.65008 1.40312 1.23090 1.00899 0.93620 0.99746 1.22597 0.93615 0.94011 0.96516 1.63554 1.07326 1.18082 1.35924 1.20569 0.95127 0.88029 0.95958 1.22035 0.99506 0.97336 0.96279 1.24070 0.98905 0.89884 1.03494 1.44795 1.24987 1.10523 1.22943 1.18118 1.00937 0.79877 0.99574 1.21196 0.99978 0.95687 0.94996 1.21237 0.96553 0.92344 1.00066 1.21250 0.99180 0.87575 0.98253 1.98408 1.95033 1.17554 1.91602 1.21149 0.99792 0.93722 0.96096 1.21013 0.96681 0.94039 1.00310 1.78245 1.20076 1.00791 1.09525 1.75019 1.10599 1.08152 1.21526 1.22873 0.94550 0.88787 0.99604 0.92472 0.78411 0.92875 0.93786 0.93618 0.92877 0.85888 0.93521 0.74648 0.81169 0.80873 0.81899 0.83885 0.92235 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.90 10.85 21.45 0.23 -49.66 16 2 C 0.03 1.47 5.32 84.66 0.45 1.92 16 3 Si 0.96 42.47 29.54 68.60 2.03 44.49 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.56 -29.85 8.26 25.60 0.21 -29.64 16 8 H 0.06 3.13 7.79 -2.91 -0.02 3.11 16 9 C 0.23 11.67 0.86 -10.16 -0.01 11.66 16 10 O -0.59 -31.05 13.14 -148.98 -1.96 -33.01 16 11 C -0.13 -6.50 5.33 31.77 0.17 -6.33 16 12 C 0.06 2.55 6.39 86.65 0.55 3.11 16 13 N -0.52 -19.67 5.15 -890.09 -4.58 -24.26 16 14 C 0.13 3.90 5.11 85.56 0.44 4.34 16 15 C -0.01 -0.42 6.22 41.60 0.26 -0.16 16 16 C -0.02 -0.33 10.85 83.37 0.90 0.57 16 17 N -0.25 -5.81 3.56 -187.03 -0.67 -6.47 16 18 C 0.11 1.84 6.68 38.07 0.25 2.10 16 19 C -0.10 -1.06 9.46 22.38 0.21 -0.85 16 20 C -0.08 -0.72 9.82 22.28 0.22 -0.50 16 21 C -0.04 -0.38 6.32 22.34 0.14 -0.23 16 22 Cl -0.06 -0.57 28.95 -2.72 -0.08 -0.64 16 23 C -0.09 -1.03 9.82 22.27 0.22 -0.81 16 24 C -0.10 -1.60 9.62 22.38 0.22 -1.38 16 25 N -0.11 -3.36 12.41 37.02 0.46 -2.90 16 26 N -0.29 -9.79 11.81 -48.58 -0.57 -10.37 16 27 C 0.07 2.84 5.86 86.77 0.51 3.35 16 28 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.37 19.93 7.71 -74.06 -0.57 19.36 16 30 H 0.05 2.78 7.47 -2.39 -0.02 2.76 16 31 H 0.04 2.18 8.04 -2.39 -0.02 2.17 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 2.18 6.84 -2.39 -0.02 2.16 16 34 H 0.12 2.73 8.07 -2.39 -0.02 2.71 16 35 H 0.05 1.45 7.96 -2.38 -0.02 1.43 16 36 H 0.24 2.74 7.11 -2.91 -0.02 2.72 16 37 H 0.17 0.94 6.77 -2.91 -0.02 0.92 16 38 H 0.17 0.60 8.06 -2.91 -0.02 0.57 16 39 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.14 2.48 7.69 -2.91 -0.02 2.45 16 41 H 0.06 2.31 7.70 -2.39 -0.02 2.29 16 42 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -67.54 366.49 0.10 -67.44 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.50 Total: 28.23 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 4.74 Total: -12.85 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -5.13 Total: -93.66 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -1.96 Total: -33.01 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.64 kcal Total: -67.54 0.10 -67.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.341 kcal (2) G-P(sol) polarization free energy of solvation -67.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds