Wall clock time and date at job start Wed Apr 1 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99734 * 2 1 4 4 H 1.48501 * 109.47137 * 269.99186 * 3 2 1 5 5 H 1.48505 * 109.47641 * 29.99656 * 3 2 1 6 6 H 1.48509 * 109.47176 * 149.99912 * 3 2 1 7 7 C 1.37877 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00381 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99398 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46439 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46708 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47172 * 54.99925 * 11 10 9 13 13 N 1.46902 * 109.47389 * 295.00172 * 11 10 9 14 14 C 1.50694 * 109.46968 * 175.00047 * 11 10 9 15 15 O 1.21285 * 120.00366 * 100.00438 * 14 11 10 16 16 N 1.34779 * 120.00128 * 279.99812 * 14 11 10 17 17 C 1.38894 * 120.00314 * 179.97438 * 16 14 11 18 18 N 1.30350 * 126.04225 * 0.03409 * 17 16 14 19 19 N 1.26112 * 117.73911 * 179.97438 * 18 17 16 20 20 C 1.30823 * 117.57092 * 359.97438 * 19 18 17 21 21 C 1.46385 * 126.10138 * 180.02562 * 20 19 18 22 22 C 1.35146 * 119.99828 * 28.23021 * 21 20 19 23 23 C 1.46321 * 120.00208 * 10.89218 * 22 21 20 24 24 C 1.36662 * 125.99484 * 187.19560 * 23 22 21 25 25 C 1.40657 * 106.70230 * 179.85172 * 24 23 22 26 26 C 1.34905 * 107.12094 * 0.41654 * 25 24 23 27 27 O 1.34326 * 108.77881 * 359.73973 * 26 25 24 28 28 S 1.76458 * 126.04923 * 179.71811 * 17 16 14 29 29 H 0.96998 * 120.00076 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47376 * 60.00247 * 9 7 2 31 31 H 1.09002 * 109.47063 * 299.99334 * 9 7 2 32 32 H 1.08999 * 109.47001 * 60.00181 * 10 9 7 33 33 H 1.08992 * 109.47106 * 299.99438 * 10 9 7 34 34 H 1.00896 * 110.99620 * 300.00128 * 13 11 10 35 35 H 1.00904 * 110.99871 * 63.95230 * 13 11 10 36 36 H 0.97004 * 119.99960 * 0.02562 * 16 14 11 37 37 H 1.07995 * 119.99961 * 208.23117 * 21 20 19 38 38 H 1.08000 * 119.99879 * 190.89346 * 22 21 20 39 39 H 1.07996 * 126.64793 * 0.02562 * 24 23 22 40 40 H 1.08003 * 126.44028 * 180.19137 * 25 24 23 41 41 H 1.07999 * 125.60991 * 179.72469 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 1 0.7879 -5.0072 -0.8404 13 7 0.7290 -5.1181 1.2567 14 6 2.4549 -6.1298 -0.1226 15 8 2.7871 -6.7531 0.8633 16 7 2.9574 -6.4592 -1.3291 17 6 3.8560 -7.5121 -1.4432 18 7 4.2918 -8.2577 -0.4668 19 7 5.1093 -9.1756 -0.7490 20 6 5.4587 -9.3111 -2.0024 21 6 6.3886 -10.3079 -2.5357 22 6 6.5335 -11.4984 -1.9126 23 6 5.6006 -11.8890 -0.8551 24 6 5.7103 -12.9908 -0.0540 25 6 4.6045 -12.9704 0.8150 26 6 3.8752 -11.8789 0.5042 27 8 4.4788 -11.2282 -0.5041 28 16 4.6038 -8.0820 -2.9365 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8904 32 1 2.8720 -3.6042 0.8905 33 1 2.8719 -3.6043 -0.8894 34 1 1.3491 -5.1022 2.0524 35 1 0.0242 -4.4001 1.3329 36 1 2.6920 -5.9605 -2.1176 37 1 6.9588 -10.0921 -3.4270 38 1 7.3378 -12.1614 -2.1951 39 1 6.4955 -13.7317 -0.0808 40 1 4.3794 -13.6946 1.5840 41 1 2.9569 -11.5779 0.9864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592233753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:25 Heat of formation + Delta-G solvation = 79.485547 kcal Electronic energy + Delta-G solvation = -26813.894400 eV Core-core repulsion = 22824.155143 eV Total energy + Delta-G solvation = -3989.739257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.49983 -41.11910 -39.81313 -36.01084 -35.42321 -34.76999 -33.09251 -32.94059 -30.36961 -30.01546 -28.74292 -27.17826 -25.90013 -24.30967 -23.14257 -21.83945 -21.76262 -20.62426 -20.33553 -19.57016 -18.76423 -17.73346 -17.52964 -16.63237 -16.30177 -16.09052 -15.86385 -15.51409 -14.97803 -14.70590 -14.55992 -14.39994 -14.27329 -13.64677 -13.37385 -13.21531 -13.14741 -12.91289 -12.65299 -12.32808 -12.27579 -11.97031 -11.66870 -11.21057 -11.01528 -10.91328 -10.76454 -10.61445 -10.26061 -10.10518 -10.01540 -9.93170 -9.66816 -9.43861 -9.31517 -8.85344 -8.50907 -8.36595 -7.92941 -6.14999 -4.18509 -0.14411 0.38500 0.92280 1.17998 2.18466 2.44105 2.62604 2.76155 2.90110 3.08030 3.23035 3.30331 3.33573 4.03954 4.33155 4.36668 4.40642 4.76803 4.88415 4.94321 4.98087 5.02521 5.21271 5.33467 5.36097 5.48710 5.53849 5.59522 5.77793 5.87582 5.93302 6.06301 6.11802 6.36066 6.38632 6.73419 6.86121 7.08086 7.35115 7.42462 7.51703 7.75279 7.81545 7.98502 8.23003 8.63948 8.87170 9.46940 10.95769 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.002103 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.754273 B =13312.327269 C =14131.836397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.140 4.140 11 C 0.084 3.916 12 H 0.104 0.896 13 N -0.829 5.829 14 C 0.517 3.483 15 O -0.461 6.461 16 N -0.627 5.627 17 C 0.266 3.734 18 N -0.262 5.262 19 N -0.196 5.196 20 C 0.025 3.975 21 C -0.089 4.089 22 C -0.022 4.022 23 C -0.005 4.005 24 C -0.178 4.178 25 C -0.229 4.229 26 C -0.011 4.011 27 O -0.138 6.138 28 S 0.060 5.940 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.348 0.652 35 H 0.359 0.641 36 H 0.427 0.573 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.155 -24.407 -8.065 27.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.180 4.180 11 C -0.032 4.032 12 H 0.122 0.878 13 N -0.363 5.363 14 C 0.302 3.698 15 O -0.327 6.327 16 N -0.279 5.279 17 C -0.103 4.103 18 N -0.107 5.107 19 N -0.035 5.035 20 C -0.252 4.252 21 C -0.111 4.111 22 C -0.047 4.047 23 C -0.056 4.056 24 C -0.197 4.197 25 C -0.248 4.248 26 C -0.081 4.081 27 O -0.031 6.031 28 S 0.302 5.698 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.162 0.838 35 H 0.176 0.824 36 H 0.265 0.735 37 H 0.168 0.832 38 H 0.178 0.822 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 9.750 -25.058 -7.392 27.885 hybrid contribution 0.676 2.127 -0.144 2.236 sum 10.426 -22.931 -7.537 26.293 Atomic orbital electron populations 1.69940 1.06012 1.26897 1.50225 1.25010 0.94890 0.99360 0.95030 0.86572 0.79873 0.83277 0.78178 1.20582 1.21101 1.19870 1.21151 0.93037 0.90802 1.51404 0.92675 1.19110 0.93617 0.90957 0.97533 1.22457 1.00052 0.93632 1.01863 1.21465 0.94241 0.91121 0.96408 0.87839 1.58728 1.18474 1.56171 1.02901 1.21559 0.81529 0.85180 0.81554 1.90795 1.55987 1.50393 1.35515 1.43341 1.41748 1.29767 1.13067 1.27120 0.96675 0.95265 0.91201 1.71717 1.10802 1.03479 1.24732 1.71694 1.07340 1.10670 1.13787 1.27472 1.04419 1.01821 0.91456 1.21094 0.97790 0.91521 1.00734 1.21468 0.95650 0.96057 0.91505 1.20600 0.90438 0.93792 1.00736 1.21933 1.00671 0.99317 0.97827 1.21686 0.97602 1.01200 1.04317 1.24309 0.99748 0.93327 0.90737 1.84516 1.31177 1.44899 1.42545 1.85656 1.42660 1.31370 1.10132 0.92805 0.96178 0.96222 0.92268 0.92397 0.83823 0.82431 0.73465 0.83171 0.82194 0.83381 0.83547 0.78568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.00 9.11 -34.44 -0.31 -14.31 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.58 4.78 -26.73 -0.13 -2.71 16 11 C 0.08 1.31 3.21 -68.87 -0.22 1.09 16 12 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 13 N -0.83 -13.42 8.94 -5.65 -0.05 -13.47 16 14 C 0.52 8.37 7.04 -10.99 -0.08 8.29 16 15 O -0.46 -9.10 14.95 5.55 0.08 -9.02 16 16 N -0.63 -8.27 5.40 -11.62 -0.06 -8.34 16 17 C 0.27 3.81 8.41 -86.86 -0.73 3.07 16 18 N -0.26 -4.48 9.79 31.05 0.30 -4.18 16 19 N -0.20 -3.03 7.82 32.75 0.26 -2.77 16 20 C 0.03 0.30 6.57 -14.70 -0.10 0.21 16 21 C -0.09 -0.72 10.23 -37.41 -0.38 -1.11 16 22 C -0.02 -0.17 10.14 -37.43 -0.38 -0.55 16 23 C -0.01 -0.06 6.54 -36.90 -0.24 -0.30 16 24 C -0.18 -1.71 10.87 -39.24 -0.43 -2.14 16 25 C -0.23 -2.31 10.88 -39.85 -0.43 -2.75 16 26 C -0.01 -0.13 12.08 29.55 0.36 0.23 16 27 O -0.14 -1.85 6.40 4.14 0.03 -1.82 16 28 S 0.06 0.63 23.52 -107.50 -2.53 -1.89 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.47 6.87 -51.93 -0.36 0.12 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.35 5.77 8.58 -39.29 -0.34 5.43 16 35 H 0.36 5.78 7.55 -39.29 -0.30 5.48 16 36 H 0.43 4.11 8.82 -40.82 -0.36 3.75 16 37 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 39 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.20 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -35.10 371.72 -8.65 -43.75 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -4.70 Total: 9.90 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -3.30 Total: -9.00 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 1.18 Total: -53.41 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.11 Total: -10.85 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.53 Total: -1.89 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.10 -8.65 -43.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592233753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.239 kcal (2) G-P(sol) polarization free energy of solvation -35.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds