Wall clock time and date at job start Wed Apr 1 2020 05:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99734 * 2 1 4 4 H 1.48501 * 109.47137 * 269.99186 * 3 2 1 5 5 H 1.48505 * 109.47641 * 29.99656 * 3 2 1 6 6 H 1.48509 * 109.47176 * 149.99912 * 3 2 1 7 7 C 1.37877 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00381 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99398 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46439 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46708 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47172 * 54.99925 * 11 10 9 13 13 N 1.46902 * 109.47389 * 295.00172 * 11 10 9 14 14 C 1.50694 * 109.46968 * 175.00047 * 11 10 9 15 15 O 1.21285 * 120.00366 * 100.00438 * 14 11 10 16 16 N 1.34779 * 120.00128 * 279.99812 * 14 11 10 17 17 C 1.38894 * 120.00314 * 179.97438 * 16 14 11 18 18 N 1.30350 * 126.04225 * 0.03409 * 17 16 14 19 19 N 1.26112 * 117.73911 * 179.97438 * 18 17 16 20 20 C 1.30823 * 117.57092 * 359.97438 * 19 18 17 21 21 C 1.46385 * 126.10138 * 180.02562 * 20 19 18 22 22 C 1.35146 * 119.99828 * 28.23021 * 21 20 19 23 23 C 1.46321 * 120.00208 * 10.89218 * 22 21 20 24 24 C 1.36662 * 125.99484 * 187.19560 * 23 22 21 25 25 C 1.40657 * 106.70230 * 179.85172 * 24 23 22 26 26 C 1.34905 * 107.12094 * 0.41654 * 25 24 23 27 27 O 1.34326 * 108.77881 * 359.73973 * 26 25 24 28 28 S 1.76458 * 126.04923 * 179.71811 * 17 16 14 29 29 H 0.96998 * 120.00076 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47376 * 60.00247 * 9 7 2 31 31 H 1.09002 * 109.47063 * 299.99334 * 9 7 2 32 32 H 1.08999 * 109.47001 * 60.00181 * 10 9 7 33 33 H 1.08992 * 109.47106 * 299.99438 * 10 9 7 34 34 H 1.00896 * 110.99620 * 300.00128 * 13 11 10 35 35 H 1.00904 * 110.99871 * 63.95230 * 13 11 10 36 36 H 0.97004 * 119.99960 * 0.02562 * 16 14 11 37 37 H 1.07995 * 119.99961 * 208.23117 * 21 20 19 38 38 H 1.08000 * 119.99879 * 190.89346 * 22 21 20 39 39 H 1.07996 * 126.64793 * 0.02562 * 24 23 22 40 40 H 1.08003 * 126.44028 * 180.19137 * 25 24 23 41 41 H 1.07999 * 125.60991 * 179.72469 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 1 0.7879 -5.0072 -0.8404 13 7 0.7290 -5.1181 1.2567 14 6 2.4549 -6.1298 -0.1226 15 8 2.7871 -6.7531 0.8633 16 7 2.9574 -6.4592 -1.3291 17 6 3.8560 -7.5121 -1.4432 18 7 4.2918 -8.2577 -0.4668 19 7 5.1093 -9.1756 -0.7490 20 6 5.4587 -9.3111 -2.0024 21 6 6.3886 -10.3079 -2.5357 22 6 6.5335 -11.4984 -1.9126 23 6 5.6006 -11.8890 -0.8551 24 6 5.7103 -12.9908 -0.0540 25 6 4.6045 -12.9704 0.8150 26 6 3.8752 -11.8789 0.5042 27 8 4.4788 -11.2282 -0.5041 28 16 4.6038 -8.0820 -2.9365 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8904 32 1 2.8720 -3.6042 0.8905 33 1 2.8719 -3.6043 -0.8894 34 1 1.3491 -5.1022 2.0524 35 1 0.0242 -4.4001 1.3329 36 1 2.6920 -5.9605 -2.1176 37 1 6.9588 -10.0921 -3.4270 38 1 7.3378 -12.1614 -2.1951 39 1 6.4955 -13.7317 -0.0808 40 1 4.3794 -13.6946 1.5840 41 1 2.9569 -11.5779 0.9864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592233753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:24 Heat of formation + Delta-G solvation = 54.754823 kcal Electronic energy + Delta-G solvation = -26814.966805 eV Core-core repulsion = 22824.155143 eV Total energy + Delta-G solvation = -3990.811662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.29044 -42.17132 -41.01315 -37.34277 -36.59853 -35.61259 -34.87036 -33.87832 -31.73267 -31.29290 -29.62886 -28.47394 -27.12983 -25.78940 -24.17260 -22.97461 -22.58324 -22.00624 -21.35123 -20.53076 -19.80201 -18.84352 -18.65221 -18.16711 -17.52130 -17.07663 -16.80540 -16.57169 -16.28400 -16.09784 -15.87148 -15.73247 -15.18411 -14.84709 -14.74643 -14.49561 -14.10420 -13.90980 -13.67247 -13.52776 -13.37598 -13.04964 -12.98344 -12.80524 -12.67023 -12.54915 -11.94031 -11.83020 -11.74012 -11.50073 -11.31823 -11.15374 -10.81146 -10.77843 -10.56473 -10.48446 -9.84579 -9.72879 -8.71911 -8.22462 -6.32189 -0.98323 -0.54379 0.03513 0.32222 1.25506 1.38695 1.40194 1.48239 1.50268 1.60224 1.77945 2.15690 2.29401 2.38976 3.09817 3.11853 3.46863 3.64392 3.74029 3.91042 4.03051 4.11539 4.13887 4.16179 4.25883 4.59696 4.71148 4.77018 4.83307 4.86583 4.94886 5.04788 5.08918 5.23161 5.38137 5.45886 5.64061 5.70651 5.79136 5.81669 6.07188 6.20014 6.31201 6.41326 6.79631 6.83177 7.36850 7.66962 8.88040 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.002103 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.754273 B =13312.327269 C =14131.836397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.006 3.994 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.124 4.124 11 C 0.093 3.907 12 H 0.126 0.874 13 N -0.830 5.830 14 C 0.523 3.477 15 O -0.503 6.503 16 N -0.615 5.615 17 C 0.230 3.770 18 N -0.304 5.304 19 N -0.237 5.237 20 C 0.026 3.974 21 C -0.106 4.106 22 C -0.007 4.007 23 C -0.031 4.031 24 C -0.178 4.178 25 C -0.229 4.229 26 C -0.045 4.045 27 O -0.164 6.164 28 S 0.136 5.864 29 H 0.264 0.736 30 H 0.008 0.992 31 H 0.005 0.995 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.345 0.655 35 H 0.359 0.641 36 H 0.442 0.558 37 H 0.193 0.807 38 H 0.208 0.792 39 H 0.180 0.820 40 H 0.166 0.834 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.368 -25.633 -10.277 30.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.164 4.164 11 C -0.023 4.023 12 H 0.143 0.857 13 N -0.363 5.363 14 C 0.308 3.692 15 O -0.372 6.372 16 N -0.269 5.269 17 C -0.139 4.139 18 N -0.149 5.149 19 N -0.075 5.075 20 C -0.251 4.251 21 C -0.127 4.127 22 C -0.032 4.032 23 C -0.081 4.081 24 C -0.197 4.197 25 C -0.248 4.248 26 C -0.114 4.114 27 O -0.058 6.058 28 S 0.379 5.621 29 H 0.073 0.927 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.158 0.842 35 H 0.175 0.825 36 H 0.284 0.716 37 H 0.210 0.790 38 H 0.225 0.775 39 H 0.197 0.803 40 H 0.184 0.816 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 11.972 -26.288 -9.652 30.456 hybrid contribution 0.069 2.335 0.464 2.381 sum 12.040 -23.954 -9.188 28.340 Atomic orbital electron populations 1.70046 1.07359 1.27747 1.51282 1.25828 0.95732 1.02853 0.94836 0.85574 0.78581 0.79160 0.78496 1.19635 1.20901 1.19472 1.21600 0.93320 0.92464 1.50862 0.92813 1.18974 0.93949 0.91619 0.96148 1.22197 0.98974 0.93396 1.01820 1.21382 0.94226 0.89717 0.96955 0.85673 1.58741 1.18445 1.55989 1.03087 1.21441 0.81104 0.84770 0.81922 1.90781 1.57403 1.51886 1.37139 1.43005 1.41383 1.29777 1.12732 1.27257 0.97770 0.95736 0.93132 1.71640 1.11686 1.04366 1.27165 1.71676 1.08771 1.11396 1.15627 1.28342 1.03474 1.02087 0.91178 1.21658 0.97760 0.91007 1.02321 1.22129 0.95187 0.96585 0.89260 1.21442 0.90514 0.94222 1.01945 1.22363 1.00942 0.99494 0.96926 1.22039 0.97427 1.00767 1.04520 1.24591 1.00766 0.94445 0.91644 1.84498 1.32307 1.45906 1.43114 1.85288 1.40608 1.29579 1.06611 0.92730 0.97323 0.97707 0.93672 0.91054 0.84179 0.82496 0.71583 0.78993 0.77489 0.80279 0.81625 0.78508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.09 13.29 21.45 0.28 -52.80 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.96 42.81 29.54 68.60 2.03 44.83 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.54 -29.13 9.11 25.60 0.23 -28.90 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.03 1.42 4.74 29.85 0.14 1.56 16 10 C -0.12 -4.58 4.78 30.60 0.15 -4.43 16 11 C 0.09 2.93 3.21 44.17 0.14 3.07 16 12 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 13 N -0.83 -27.48 8.94 -171.80 -1.54 -29.02 16 14 C 0.52 17.18 7.04 87.65 0.62 17.80 16 15 O -0.50 -20.66 14.95 -3.05 -0.05 -20.70 16 16 N -0.61 -16.11 5.40 -309.06 -1.67 -17.78 16 17 C 0.23 6.58 8.41 179.03 1.51 8.08 16 18 N -0.30 -10.71 9.79 -55.69 -0.54 -11.26 16 19 N -0.24 -7.39 7.82 -50.30 -0.39 -7.78 16 20 C 0.03 0.59 6.57 86.97 0.57 1.16 16 21 C -0.11 -1.38 10.23 23.68 0.24 -1.13 16 22 C -0.01 -0.09 10.14 23.66 0.24 0.15 16 23 C -0.03 -0.64 6.54 24.00 0.16 -0.48 16 24 C -0.18 -3.09 10.87 22.49 0.24 -2.84 16 25 C -0.23 -4.51 10.88 22.09 0.24 -4.27 16 26 C -0.04 -1.10 12.08 67.05 0.81 -0.29 16 27 O -0.16 -4.47 6.40 -8.10 -0.05 -4.52 16 28 S 0.14 2.62 23.52 -56.49 -1.33 1.29 16 29 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.00 0.23 6.87 -2.39 -0.02 0.21 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.35 11.87 8.58 -89.70 -0.77 11.10 16 35 H 0.36 11.84 7.55 -89.69 -0.68 11.16 16 36 H 0.44 8.04 8.82 -92.71 -0.82 7.22 16 37 H 0.19 0.79 8.06 -2.91 -0.02 0.76 16 38 H 0.21 0.34 8.06 -2.91 -0.02 0.31 16 39 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.20 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -79.08 371.72 1.35 -77.73 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -1.15 Total: 29.73 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 5.75 Total: -9.71 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -3.86 Total: -118.64 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.10 Total: -25.22 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.33 Total: 1.29 kcal Total: -79.08 1.35 -77.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592233753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.484 kcal (2) G-P(sol) polarization free energy of solvation -79.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds