Wall clock time and date at job start Wed Apr 1 2020 05:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48495 * 109.46982 * 239.99798 * 3 2 1 5 5 H 1.48496 * 109.47392 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46775 * 120.00326 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63550 * 300.69725 * 9 7 2 11 11 C 1.55152 * 110.71825 * 177.55974 * 9 7 2 12 12 C 1.54909 * 101.58032 * 205.95483 * 11 9 7 13 13 N 1.47422 * 104.83564 * 37.00513 * 12 11 9 14 14 C 1.34776 * 125.64926 * 155.82503 * 13 12 11 15 15 O 1.21601 * 119.99761 * 180.02562 * 14 13 12 16 16 C 1.47515 * 120.00341 * 0.02626 * 14 13 12 17 17 C 1.36593 * 125.77406 * 179.97438 * 16 14 13 18 18 N 1.34812 * 106.84237 * 179.97438 * 17 16 14 19 19 C 1.46497 * 126.59794 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47054 * 125.00410 * 19 18 17 21 21 C 1.33386 * 125.20478 * 90.00474 * 20 19 18 22 22 C 1.38424 * 114.92316 * 179.97438 * 21 20 19 23 23 C 1.33389 * 114.92162 * 0.02562 * 22 21 20 24 24 S 1.75881 * 109.59134 * 359.75363 * 23 22 21 25 25 N 1.40211 * 106.81083 * 0.02562 * 18 17 16 26 26 N 1.28763 * 108.36733 * 359.73779 * 25 18 17 27 27 C 1.47027 * 108.69865 * 335.87617 * 13 12 11 28 28 H 0.97000 * 119.99959 * 359.97438 * 1 2 3 29 29 H 0.96700 * 114.00311 * 56.86306 * 10 9 7 30 30 H 1.09005 * 111.00538 * 324.02517 * 11 9 7 31 31 H 1.08998 * 111.00529 * 87.84162 * 11 9 7 32 32 H 1.09002 * 110.37204 * 155.85017 * 12 11 9 33 33 H 1.09005 * 110.36554 * 278.05837 * 12 11 9 34 34 H 1.08005 * 126.58058 * 0.02562 * 17 16 14 35 35 H 1.08998 * 109.47746 * 245.00808 * 19 18 17 36 36 H 1.09004 * 109.47086 * 5.00554 * 19 18 17 37 37 H 1.08002 * 122.53998 * 359.95409 * 21 20 19 38 38 H 1.08005 * 122.53858 * 180.02562 * 22 21 20 39 39 H 1.07999 * 125.20348 * 180.02562 * 23 22 21 40 40 H 1.09003 * 109.87825 * 241.63649 * 27 13 12 41 41 H 1.09001 * 109.88209 * 120.47703 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.4076 -2.5947 1.1479 11 6 2.2323 -3.6994 -0.0639 12 6 1.3489 -4.7895 -0.7204 13 7 0.5283 -4.0659 -1.7085 14 6 -0.0357 -4.6055 -2.8073 15 8 -0.6950 -3.9103 -3.5560 16 6 0.1468 -6.0394 -3.1015 17 6 -0.3695 -6.7061 -4.1762 18 7 0.0315 -7.9887 -4.0696 19 6 -0.2787 -9.0806 -4.9958 20 6 1.0024 -9.7215 -5.4638 21 6 1.6129 -10.7458 -4.8662 22 6 2.7803 -11.1673 -5.4791 23 6 3.1181 -10.4849 -6.5743 24 16 1.9179 -9.2375 -6.8855 25 7 0.8025 -8.0769 -2.9019 26 7 0.8536 -6.9098 -2.3603 27 6 0.4282 -2.6578 -1.2974 28 1 -0.4850 0.8400 0.0004 29 1 -0.2247 -1.8680 1.2334 30 1 3.0948 -3.4670 -0.6886 31 1 2.5461 -3.9997 0.9358 32 1 1.9712 -5.5343 -1.2166 33 1 0.7139 -5.2644 0.0276 34 1 -0.9809 -6.2860 -4.9612 35 1 -0.8927 -9.8244 -4.4881 36 1 -0.8221 -8.6856 -5.8542 37 1 1.2259 -11.2110 -3.9716 38 1 3.3726 -11.9867 -5.0994 39 1 3.9924 -10.6727 -7.1799 40 1 -0.6140 -2.4001 -1.1087 41 1 0.8361 -2.0142 -2.0768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:13 Heat of formation + Delta-G solvation = 62.448298 kcal Electronic energy + Delta-G solvation = -27469.081242 eV Core-core repulsion = 23478.603195 eV Total energy + Delta-G solvation = -3990.478048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.15675 -39.11545 -38.37108 -37.08106 -35.10753 -34.17987 -32.13915 -31.31996 -30.69025 -29.73179 -27.78180 -27.03634 -25.33411 -23.91924 -23.40006 -22.11822 -21.84365 -19.80506 -19.65392 -19.29834 -17.76388 -17.21270 -17.10212 -16.28735 -16.04480 -15.62942 -15.48820 -14.88884 -14.80986 -14.43478 -14.19548 -13.94982 -13.52315 -13.23784 -13.03424 -12.93102 -12.86284 -12.77618 -12.42346 -12.17470 -11.87858 -11.64838 -11.39816 -11.23998 -11.19571 -10.96661 -10.62199 -10.52670 -10.48639 -10.39314 -10.06469 -9.56985 -9.31744 -9.22726 -9.17220 -8.89883 -8.61968 -8.26302 -7.79504 -6.24259 -4.32751 0.37542 1.07828 1.19983 1.51315 1.91191 1.94193 2.44636 3.25790 3.31062 3.33380 3.58700 3.72285 3.95844 4.14525 4.30191 4.32999 4.63507 4.68737 4.80586 5.01363 5.04525 5.05918 5.13335 5.27551 5.62324 5.63199 5.70875 5.79864 5.95194 5.99645 6.02545 6.23868 6.24608 6.47806 6.64202 6.87693 6.95928 7.05669 7.33435 7.43581 7.78023 7.98648 8.06510 8.25672 8.68199 8.73826 9.35785 9.47018 10.83346 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.021535 B = 0.002239 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.870030 B =12503.734788 C =12568.134639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.120 4.120 12 C 0.104 3.896 13 N -0.592 5.592 14 C 0.602 3.398 15 O -0.553 6.553 16 C -0.082 4.082 17 C 0.085 3.915 18 N -0.366 5.366 19 C 0.201 3.799 20 C -0.220 4.220 21 C -0.090 4.090 22 C -0.140 4.140 23 C -0.198 4.198 24 S 0.116 5.884 25 N -0.063 5.063 26 N -0.198 5.198 27 C 0.104 3.896 28 H 0.271 0.729 29 H 0.384 0.616 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.203 0.797 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.167 0.833 40 H 0.067 0.933 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.851 -22.258 -13.496 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.158 4.158 12 C -0.019 4.019 13 N -0.322 5.322 14 C 0.387 3.613 15 O -0.432 6.432 16 C -0.221 4.221 17 C -0.071 4.071 18 N -0.152 5.152 19 C 0.078 3.922 20 C -0.338 4.338 21 C -0.122 4.122 22 C -0.171 4.171 23 C -0.335 4.335 24 S 0.380 5.620 25 N -0.043 5.043 26 N -0.072 5.072 27 C -0.018 4.018 28 H 0.081 0.919 29 H 0.235 0.765 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.220 0.780 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.184 0.816 40 H 0.085 0.915 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.279 -22.153 -14.092 26.286 hybrid contribution -0.255 0.841 0.140 0.890 sum 1.023 -21.312 -13.952 25.493 Atomic orbital electron populations 1.69640 1.05970 1.28000 1.49879 1.25083 0.95060 0.99734 0.93450 0.86456 0.79527 0.82096 0.78797 1.20049 1.21104 1.20003 1.21498 0.93703 0.90110 1.52148 0.91535 1.19489 0.86177 0.92194 0.81388 1.86100 1.53568 1.52640 1.47097 1.22789 0.97552 0.95120 1.00318 1.22490 0.93424 0.95114 0.90880 1.48569 1.48889 1.12683 1.22104 1.16405 0.80179 0.83645 0.81064 1.90774 1.42141 1.61288 1.49008 1.21643 1.06682 0.96816 0.96948 1.23333 0.99370 0.83881 1.00475 1.50532 1.36893 1.07815 1.19939 1.20195 0.92788 0.87607 0.91562 1.24269 1.03146 1.03889 1.02485 1.20228 0.95127 0.96428 1.00437 1.20224 0.97961 1.02523 0.96362 1.25763 1.04107 1.00601 1.02997 1.84423 1.17467 1.34759 1.25371 1.81987 1.12842 1.15471 0.93983 1.74783 1.13424 0.96875 1.22152 1.23071 1.01881 0.77513 0.99291 0.91930 0.76538 0.90675 0.90532 0.90013 0.91749 0.78014 0.86633 0.86799 0.83687 0.83805 0.81557 0.91460 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.04 10.97 55.43 0.61 -23.43 16 2 C 0.07 1.84 5.27 -17.82 -0.09 1.74 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.23 8.12 -34.44 -0.28 -14.51 16 8 H 0.07 1.73 7.77 -52.49 -0.41 1.33 16 9 C 0.25 6.18 0.86 -89.94 -0.08 6.10 16 10 O -0.58 -15.13 13.09 -35.23 -0.46 -15.59 16 11 C -0.12 -2.55 6.22 -24.59 -0.15 -2.70 16 12 C 0.10 2.07 6.12 -2.53 -0.02 2.05 16 13 N -0.59 -13.01 3.33 -171.75 -0.57 -13.58 16 14 C 0.60 12.54 7.85 -12.48 -0.10 12.44 16 15 O -0.55 -12.72 17.19 5.28 0.09 -12.63 16 16 C -0.08 -1.39 6.84 -83.55 -0.57 -1.96 16 17 C 0.09 1.07 11.27 -16.84 -0.19 0.88 16 18 N -0.37 -4.06 3.68 -62.24 -0.23 -4.29 16 19 C 0.20 1.34 7.03 -5.20 -0.04 1.30 16 20 C -0.22 -1.71 5.96 -36.01 -0.21 -1.92 16 21 C -0.09 -0.68 10.05 -41.21 -0.41 -1.09 16 22 C -0.14 -0.98 10.18 -41.21 -0.42 -1.40 16 23 C -0.20 -1.38 11.23 29.04 0.33 -1.05 16 24 S 0.12 0.89 23.33 -107.50 -2.51 -1.62 16 25 N -0.06 -0.91 13.63 60.35 0.82 -0.09 16 26 N -0.20 -3.34 9.39 32.84 0.31 -3.03 16 27 C 0.10 2.58 5.39 -3.07 -0.02 2.56 16 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.38 10.12 7.17 45.56 0.33 10.45 16 30 H 0.07 1.54 8.04 -51.93 -0.42 1.12 16 31 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.08 1.51 6.13 -51.93 -0.32 1.19 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.20 1.89 8.06 -52.48 -0.42 1.47 16 35 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.11 0.45 8.08 -51.93 -0.42 0.03 16 37 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.07 1.80 8.01 -51.93 -0.42 1.38 16 41 H 0.07 1.82 7.82 -51.93 -0.41 1.41 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -32.27 365.84 -7.85 -40.12 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.15 Total: 10.55 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.25 Total: 2.44 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.94 Total: -44.42 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.37 Total: -28.22 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.51 Total: -1.62 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.27 -7.85 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.572 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds