Wall clock time and date at job start Wed Apr 1 2020 05:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 119.99927 * 2 1 4 4 H 1.48494 * 109.47649 * 269.99974 * 3 2 1 5 5 H 1.48498 * 109.47262 * 30.00680 * 3 2 1 6 6 H 1.48509 * 109.46905 * 150.00209 * 3 2 1 7 7 C 1.38949 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00179 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99650 * 359.97438 * 7 2 1 10 10 C 1.34783 * 120.00165 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99129 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00540 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47377 * 179.97438 * 12 10 9 14 14 C 1.46848 * 110.99918 * 189.99730 * 13 12 10 15 15 C 1.53037 * 109.52381 * 174.15634 * 14 13 12 16 16 H 1.08997 * 109.53826 * 299.22428 * 15 14 13 17 17 C 1.52995 * 109.50427 * 179.12019 * 15 14 13 18 18 F 1.39898 * 109.47410 * 300.20010 * 17 15 14 19 19 F 1.39900 * 109.47084 * 60.20406 * 17 15 14 20 20 F 1.39905 * 109.47015 * 180.19612 * 17 15 14 21 21 C 1.53123 * 109.27398 * 59.18254 * 15 14 13 22 22 C 1.53120 * 109.21163 * 302.31409 * 21 15 14 23 23 H 1.08997 * 109.50353 * 297.74224 * 22 21 15 24 24 C 1.53000 * 109.50184 * 177.62686 * 22 21 15 25 25 F 1.39906 * 109.47346 * 60.00142 * 24 22 21 26 26 F 1.39897 * 109.47457 * 179.97438 * 24 22 21 27 27 F 1.39896 * 109.47163 * 300.00079 * 24 22 21 28 28 C 1.46845 * 111.00045 * 65.79142 * 13 12 10 29 29 H 0.97000 * 120.00018 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00575 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47286 * 59.99540 * 12 10 9 32 32 H 1.09007 * 109.46917 * 300.00215 * 12 10 9 33 33 H 1.09006 * 109.46097 * 54.14433 * 14 13 12 34 34 H 1.08996 * 109.46046 * 294.17217 * 14 13 12 35 35 H 1.09002 * 109.52319 * 62.25202 * 21 15 14 36 36 H 1.08995 * 109.52318 * 182.37884 * 21 15 14 37 37 H 1.09003 * 109.45905 * 305.85870 * 28 13 12 38 38 H 1.09002 * 109.46166 * 65.83312 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1983 -5.9795 -0.0007 14 6 1.5139 -7.2568 -0.2382 15 6 2.5502 -8.3743 -0.3772 16 1 3.2026 -8.1630 -1.2244 17 6 1.8358 -9.7083 -0.6027 18 9 0.9974 -9.9779 0.4842 19 9 1.0733 -9.6369 -1.7735 20 9 2.7837 -10.7300 -0.7253 21 6 3.3850 -8.4517 0.9041 22 6 4.0495 -7.0952 1.1552 23 1 4.7255 -6.8632 0.3322 24 6 4.8379 -7.1474 2.4654 25 9 5.8210 -8.1390 2.3790 26 9 5.4452 -5.9080 2.6940 27 9 3.9688 -7.4431 3.5211 28 6 2.9686 -6.0142 1.2491 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0002 31 1 0.6166 -4.9209 -0.8897 32 1 0.6174 -4.9204 0.8903 33 1 0.9271 -7.1896 -1.1544 34 1 0.8534 -7.4763 0.6007 35 1 2.7388 -8.7020 1.7454 36 1 4.1521 -9.2181 0.7933 37 1 3.4384 -5.0444 1.4131 38 1 2.3012 -6.2398 2.0808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609417594.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:22 Heat of formation + Delta-G solvation = -345.863110 kcal Electronic energy + Delta-G solvation = -32437.037602 eV Core-core repulsion = 26870.094740 eV Total energy + Delta-G solvation = -5566.942862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.101 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.36531 -50.14596 -47.83612 -47.81842 -47.65413 -47.57331 -39.64548 -37.86650 -34.40073 -33.70179 -32.64724 -31.29800 -27.85789 -26.22691 -26.05208 -24.79926 -22.82214 -22.17347 -20.49837 -19.41129 -18.72314 -18.63038 -18.41907 -18.28706 -18.08112 -17.74509 -16.76960 -16.17990 -15.71017 -15.31486 -14.85369 -14.79337 -14.64872 -14.49552 -14.47697 -14.25140 -14.13963 -14.07790 -13.98667 -13.96960 -13.87455 -13.78130 -13.74391 -13.63620 -13.49231 -13.37973 -12.59937 -12.31954 -12.11680 -11.74585 -11.63554 -11.51649 -11.34764 -11.13626 -10.94428 -10.84593 -10.42968 -10.27131 -9.53749 -8.66473 -8.15006 -8.01234 -6.47536 -3.88588 2.36648 2.68506 3.14369 3.24007 3.28702 3.36312 3.48613 3.58623 3.77763 3.81686 3.94189 4.02045 4.09539 4.26874 4.41208 4.46553 4.64612 4.76923 4.89326 4.98090 5.05632 5.17224 5.25239 5.33913 5.43918 5.53420 5.63604 5.71589 5.85979 6.08463 6.14781 6.90760 6.99747 7.50144 7.99200 8.53728 9.11601 9.46485 9.96963 10.69900 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.003278 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.457428 B = 8540.912527 C =10230.048022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.560 5.560 10 C 0.440 3.560 11 O -0.577 6.577 12 C 0.048 3.952 13 N -0.506 5.506 14 C 0.052 3.948 15 C -0.125 4.125 16 H 0.130 0.870 17 C 0.459 3.541 18 F -0.182 7.182 19 F -0.180 7.180 20 F -0.182 7.182 21 C -0.121 4.121 22 C -0.124 4.124 23 H 0.130 0.870 24 C 0.459 3.541 25 F -0.185 7.185 26 F -0.173 7.173 27 F -0.184 7.184 28 C 0.050 3.950 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 -18.935 1.415 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.196 5.196 10 C 0.225 3.775 11 O -0.462 6.462 12 C -0.083 4.083 13 N -0.229 5.229 14 C -0.076 4.076 15 C -0.145 4.145 16 H 0.148 0.852 17 C 0.404 3.596 18 F -0.163 7.163 19 F -0.161 7.161 20 F -0.163 7.163 21 C -0.158 4.158 22 C -0.143 4.143 23 H 0.148 0.852 24 C 0.404 3.596 25 F -0.166 7.166 26 F -0.155 7.155 27 F -0.165 7.165 28 C -0.078 4.078 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.249 -18.703 1.063 19.013 hybrid contribution -0.815 0.426 0.756 1.191 sum 2.434 -18.277 1.819 18.527 Atomic orbital electron populations 1.69606 1.05972 1.28289 1.50247 1.25267 0.95622 0.99778 0.97127 0.85857 0.79265 0.80740 0.78445 1.20353 1.20922 1.19356 1.19702 0.93399 0.82094 1.47771 0.87792 1.41852 1.09241 1.04570 1.63930 1.19623 0.88406 0.84441 0.85010 1.90495 1.13534 1.86763 1.55398 1.21870 0.93613 0.90564 1.02255 1.61321 1.25403 1.01102 1.35120 1.22139 0.93946 0.88666 1.02865 1.22386 0.99122 0.90233 1.02771 0.85155 1.20419 0.77579 0.87589 0.73967 1.93182 1.73069 1.94927 1.55137 1.93199 1.77119 1.96551 1.49246 1.93189 1.64453 1.62926 1.95745 1.21704 1.00203 0.96727 0.97184 1.22389 0.99685 0.97874 0.94398 0.85176 1.20383 0.78417 0.73685 0.87074 1.93172 1.64396 1.62567 1.96478 1.93241 1.84185 1.42630 1.95417 1.93166 1.69437 1.93214 1.60711 1.22353 0.94437 1.00572 0.90418 0.91788 0.77436 0.88623 0.92814 0.88779 0.93217 0.89456 0.89040 0.85848 0.94014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.76 13.05 55.50 0.72 -23.04 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.30 -8.03 9.68 -14.93 -0.14 -8.18 16 8 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.40 5.29 -10.97 -0.06 -13.46 16 10 C 0.44 9.57 7.46 -10.99 -0.08 9.49 16 11 O -0.58 -14.34 13.90 5.55 0.08 -14.26 16 12 C 0.05 0.75 5.45 -4.98 -0.03 0.73 16 13 N -0.51 -7.16 4.40 -236.03 -1.04 -8.20 16 14 C 0.05 0.56 4.50 -3.83 -0.02 0.54 16 15 C -0.13 -1.17 2.33 -90.54 -0.21 -1.38 16 16 H 0.13 1.14 8.14 -51.93 -0.42 0.71 16 17 C 0.46 4.36 2.69 37.16 0.10 4.46 16 18 F -0.18 -1.85 16.22 2.25 0.04 -1.81 16 19 F -0.18 -1.82 16.82 2.25 0.04 -1.79 16 20 F -0.18 -1.78 16.85 2.25 0.04 -1.74 16 21 C -0.12 -1.14 4.07 -26.61 -0.11 -1.24 16 22 C -0.12 -1.43 2.33 -90.47 -0.21 -1.64 16 23 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 24 C 0.46 5.64 2.69 37.16 0.10 5.74 16 25 F -0.18 -2.16 16.85 2.25 0.04 -2.12 16 26 F -0.17 -2.52 16.83 2.25 0.04 -2.48 16 27 F -0.18 -2.29 16.23 2.25 0.04 -2.26 16 28 C 0.05 0.71 4.15 -3.77 -0.02 0.69 16 29 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.39 8.99 7.90 -40.82 -0.32 8.67 16 31 H 0.10 1.33 7.99 -51.93 -0.41 0.92 16 32 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 33 H 0.09 0.93 7.71 -51.93 -0.40 0.53 16 34 H 0.05 0.51 7.77 -51.93 -0.40 0.11 16 35 H 0.09 0.82 7.35 -51.93 -0.38 0.43 16 36 H 0.09 0.75 7.61 -51.93 -0.40 0.36 16 37 H 0.12 2.22 5.48 -51.93 -0.28 1.94 16 38 H 0.04 0.56 7.78 -51.93 -0.40 0.15 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -29.03 337.62 -4.50 -33.53 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -3.78 Total: 7.32 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -0.71 Total: 9.74 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.37 Total: -44.70 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.08 Total: -14.26 kcal Atomic # 9 Polarization: -12.42 SS G_CDS: 0.22 Total: -12.20 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.03 -4.50 -33.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609417594.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -312.332 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -341.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -345.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds