Wall clock time and date at job start Wed Apr 1 2020 05:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 119.99927 * 2 1 4 4 H 1.48494 * 109.47649 * 269.99974 * 3 2 1 5 5 H 1.48498 * 109.47262 * 30.00680 * 3 2 1 6 6 H 1.48509 * 109.46905 * 150.00209 * 3 2 1 7 7 C 1.38949 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00179 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99650 * 359.97438 * 7 2 1 10 10 C 1.34783 * 120.00165 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99129 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00540 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47377 * 179.97438 * 12 10 9 14 14 C 1.46848 * 110.99918 * 189.99730 * 13 12 10 15 15 C 1.53037 * 109.52381 * 174.15634 * 14 13 12 16 16 H 1.08997 * 109.53826 * 299.22428 * 15 14 13 17 17 C 1.52995 * 109.50427 * 179.12019 * 15 14 13 18 18 F 1.39898 * 109.47410 * 300.20010 * 17 15 14 19 19 F 1.39900 * 109.47084 * 60.20406 * 17 15 14 20 20 F 1.39905 * 109.47015 * 180.19612 * 17 15 14 21 21 C 1.53123 * 109.27398 * 59.18254 * 15 14 13 22 22 C 1.53120 * 109.21163 * 302.31409 * 21 15 14 23 23 H 1.08997 * 109.50353 * 297.74224 * 22 21 15 24 24 C 1.53000 * 109.50184 * 177.62686 * 22 21 15 25 25 F 1.39906 * 109.47346 * 60.00142 * 24 22 21 26 26 F 1.39897 * 109.47457 * 179.97438 * 24 22 21 27 27 F 1.39896 * 109.47163 * 300.00079 * 24 22 21 28 28 C 1.46845 * 111.00045 * 65.79142 * 13 12 10 29 29 H 0.97000 * 120.00018 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00575 * 359.97438 * 9 7 2 31 31 H 1.09007 * 109.47286 * 59.99540 * 12 10 9 32 32 H 1.09007 * 109.46917 * 300.00215 * 12 10 9 33 33 H 1.09006 * 109.46097 * 54.14433 * 14 13 12 34 34 H 1.08996 * 109.46046 * 294.17217 * 14 13 12 35 35 H 1.09002 * 109.52319 * 62.25202 * 21 15 14 36 36 H 1.08995 * 109.52318 * 182.37884 * 21 15 14 37 37 H 1.09003 * 109.45905 * 305.85870 * 28 13 12 38 38 H 1.09002 * 109.46166 * 65.83312 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1983 -5.9795 -0.0007 14 6 1.5139 -7.2568 -0.2382 15 6 2.5502 -8.3743 -0.3772 16 1 3.2026 -8.1630 -1.2244 17 6 1.8358 -9.7083 -0.6027 18 9 0.9974 -9.9779 0.4842 19 9 1.0733 -9.6369 -1.7735 20 9 2.7837 -10.7300 -0.7253 21 6 3.3850 -8.4517 0.9041 22 6 4.0495 -7.0952 1.1552 23 1 4.7255 -6.8632 0.3322 24 6 4.8379 -7.1474 2.4654 25 9 5.8210 -8.1390 2.3790 26 9 5.4452 -5.9080 2.6940 27 9 3.9688 -7.4431 3.5211 28 6 2.9686 -6.0142 1.2491 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0002 31 1 0.6166 -4.9209 -0.8897 32 1 0.6174 -4.9204 0.8903 33 1 0.9271 -7.1896 -1.1544 34 1 0.8534 -7.4763 0.6007 35 1 2.7388 -8.7020 1.7454 36 1 4.1521 -9.2181 0.7933 37 1 3.4384 -5.0444 1.4131 38 1 2.3012 -6.2398 2.0808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609417594.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:21 Heat of formation + Delta-G solvation = -364.453085 kcal Electronic energy + Delta-G solvation = -32437.843724 eV Core-core repulsion = 26870.094740 eV Total energy + Delta-G solvation = -5567.748983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.101 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.18553 -51.10020 -48.64473 -48.63927 -48.58839 -48.57769 -40.85078 -39.40687 -36.03454 -35.06393 -33.56792 -33.21741 -29.23330 -27.17544 -26.91444 -26.54226 -23.97947 -23.07519 -21.40297 -21.04776 -19.91482 -19.58745 -19.49565 -19.28148 -19.19943 -18.85550 -17.80782 -17.59452 -16.68350 -16.58333 -16.43136 -15.88477 -15.77574 -15.58269 -15.51641 -15.35476 -15.17658 -15.09285 -15.01767 -14.93935 -14.80526 -14.79597 -14.72936 -14.71643 -14.64406 -14.44122 -13.85279 -13.53803 -13.39879 -13.12539 -13.02407 -12.73985 -12.52496 -12.39089 -12.20191 -12.11800 -11.96795 -11.85206 -11.41469 -10.27911 -9.97142 -9.38920 -8.44413 -5.92164 1.39216 1.43546 1.50352 1.55683 1.77866 2.08003 2.27544 2.45131 2.61548 2.70269 2.96119 3.01064 3.14544 3.15539 3.23353 3.45170 3.59620 3.61965 3.79872 3.87480 4.06406 4.15492 4.29136 4.35806 4.47090 4.52539 4.56221 4.62993 4.74144 4.87939 4.95463 5.43990 5.71749 5.92222 6.07035 6.62969 7.16020 7.59758 8.14948 8.72878 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.003278 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.457428 B = 8540.912527 C =10230.048022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.011 4.011 3 Si 0.988 3.012 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.329 4.329 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.441 3.559 11 O -0.611 6.611 12 C 0.058 3.942 13 N -0.518 5.518 14 C 0.052 3.948 15 C -0.119 4.119 16 H 0.140 0.860 17 C 0.467 3.533 18 F -0.184 7.184 19 F -0.182 7.182 20 F -0.182 7.182 21 C -0.116 4.116 22 C -0.115 4.115 23 H 0.130 0.870 24 C 0.460 3.540 25 F -0.179 7.179 26 F -0.191 7.191 27 F -0.184 7.184 28 C 0.052 3.948 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.721 -20.312 1.099 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.211 4.211 3 Si 0.813 3.187 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.459 4.459 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.228 3.772 11 O -0.496 6.496 12 C -0.072 4.072 13 N -0.242 5.242 14 C -0.076 4.076 15 C -0.139 4.139 16 H 0.158 0.842 17 C 0.412 3.588 18 F -0.166 7.166 19 F -0.164 7.164 20 F -0.163 7.163 21 C -0.153 4.153 22 C -0.134 4.134 23 H 0.148 0.852 24 C 0.406 3.594 25 F -0.160 7.160 26 F -0.172 7.172 27 F -0.166 7.166 28 C -0.076 4.076 29 H 0.086 0.914 30 H 0.230 0.770 31 H 0.139 0.861 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.703 -20.107 0.746 20.302 hybrid contribution -0.611 0.761 0.870 1.308 sum 2.092 -19.346 1.616 19.526 Atomic orbital electron populations 1.69663 1.06764 1.29178 1.50563 1.25963 0.96461 1.02245 0.96455 0.84988 0.77932 0.77232 0.78582 1.19727 1.19792 1.19832 1.19635 0.92686 0.83958 1.49597 0.90226 1.41918 1.09344 1.04673 1.65195 1.20705 0.88345 0.85845 0.82315 1.90481 1.15482 1.87670 1.56016 1.21751 0.93306 0.87773 1.04377 1.61243 1.25698 1.02178 1.35082 1.22220 0.94336 0.87098 1.03899 1.22324 0.98810 0.89703 1.03068 0.84249 1.20294 0.77371 0.87396 0.73747 1.93183 1.73179 1.94949 1.55269 1.93199 1.77199 1.96552 1.49426 1.93193 1.64458 1.62941 1.95735 1.21711 1.00653 0.95512 0.97455 1.22289 0.98905 0.98387 0.93866 0.85171 1.20479 0.78469 0.73148 0.87336 1.93181 1.64219 1.62152 1.96458 1.93210 1.84542 1.43903 1.95548 1.93163 1.69402 1.93143 1.60845 1.22172 0.95124 0.99338 0.90951 0.91403 0.77001 0.86100 0.90833 0.87499 0.92144 0.88968 0.87347 0.90056 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.59 13.05 21.66 0.28 -48.31 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 0.99 42.23 29.55 68.60 2.03 44.25 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.33 -18.07 9.68 84.04 0.81 -17.25 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 9 N -0.57 -27.94 5.29 -306.99 -1.62 -29.56 16 10 C 0.44 19.35 7.46 87.65 0.65 20.00 16 11 O -0.61 -31.17 13.90 -3.07 -0.04 -31.22 16 12 C 0.06 1.76 5.45 85.55 0.47 2.23 16 13 N -0.52 -13.83 4.40 -900.66 -3.96 -17.79 16 14 C 0.05 0.97 4.50 86.33 0.39 1.36 16 15 C -0.12 -1.89 2.33 -10.74 -0.03 -1.92 16 16 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 17 C 0.47 7.52 2.69 71.98 0.19 7.72 16 18 F -0.18 -3.22 16.22 44.97 0.73 -2.49 16 19 F -0.18 -3.20 16.82 44.97 0.76 -2.45 16 20 F -0.18 -3.06 16.85 44.97 0.76 -2.30 16 21 C -0.12 -1.89 4.07 30.68 0.12 -1.76 16 22 C -0.11 -2.51 2.33 -10.70 -0.02 -2.54 16 23 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 24 C 0.46 10.95 2.69 71.98 0.19 11.14 16 25 F -0.18 -3.93 16.85 44.97 0.76 -3.17 16 26 F -0.19 -5.62 16.83 44.97 0.76 -4.86 16 27 F -0.18 -4.40 16.23 44.97 0.73 -3.67 16 28 C 0.05 1.45 4.15 86.37 0.36 1.81 16 29 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 30 H 0.40 18.31 7.90 -92.71 -0.73 17.58 16 31 H 0.12 3.06 7.99 -2.38 -0.02 3.04 16 32 H 0.07 1.96 8.12 -2.38 -0.02 1.94 16 33 H 0.11 1.76 7.71 -2.38 -0.02 1.74 16 34 H 0.06 1.03 7.77 -2.39 -0.02 1.02 16 35 H 0.09 1.46 7.35 -2.39 -0.02 1.44 16 36 H 0.11 1.45 7.61 -2.39 -0.02 1.43 16 37 H 0.08 3.00 5.48 -2.39 -0.01 2.99 16 38 H 0.05 1.27 7.78 -2.39 -0.02 1.25 16 Total: -1.00 -63.28 337.62 5.20 -58.08 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.42 Total: 22.84 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 3.61 Total: 20.64 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -5.30 Total: -95.66 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.04 Total: -31.22 kcal Atomic # 9 Polarization: -23.43 SS G_CDS: 4.49 Total: -18.94 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -63.28 5.20 -58.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609417594.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -306.373 kcal (2) G-P(sol) polarization free energy of solvation -63.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -369.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -364.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds