Wall clock time and date at job start Wed Apr 1 2020 04:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86798 * 119.99720 * 2 1 4 4 H 1.48499 * 109.47211 * 270.00301 * 3 2 1 5 5 H 1.48500 * 109.47241 * 30.00687 * 3 2 1 6 6 H 1.48507 * 109.46618 * 150.00424 * 3 2 1 7 7 C 1.38948 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00562 * 359.97438 * 7 2 1 9 9 N 1.37100 * 119.99565 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99980 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99513 * 359.97438 * 10 9 7 12 12 C 1.50691 * 120.00076 * 179.97438 * 10 9 7 13 13 O 1.45201 * 109.47282 * 180.02562 * 12 10 9 14 14 C 1.34234 * 117.00079 * 179.97438 * 13 12 10 15 15 O 1.20820 * 119.99753 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99595 * 179.97438 * 14 13 12 17 17 N 1.46504 * 109.46580 * 180.02562 * 16 14 13 18 18 C 1.40137 * 120.32771 * 90.00761 * 17 16 14 19 19 C 1.38536 * 120.64482 * 48.54489 * 18 17 16 20 20 C 1.38279 * 119.84858 * 180.32615 * 19 18 17 21 21 C 1.38279 * 120.17163 * 0.04729 * 20 19 18 22 22 C 1.38294 * 120.25545 * 359.86771 * 21 20 19 23 23 C 1.38457 * 119.92858 * 0.29506 * 22 21 20 24 24 O 1.35908 * 120.48749 * 180.70303 * 23 22 21 25 25 C 1.42544 * 117.43757 * 104.19346 * 24 23 22 26 26 C 1.52721 * 110.44745 * 43.69656 * 25 24 23 27 27 C 1.35187 * 120.32723 * 269.97813 * 17 16 14 28 28 O 1.21295 * 120.16505 * 3.63998 * 27 17 16 29 29 H 0.96997 * 119.99997 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00394 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47350 * 59.99732 * 12 10 9 32 32 H 1.09007 * 109.47336 * 300.00182 * 12 10 9 33 33 H 1.09004 * 109.46884 * 60.00684 * 16 14 13 34 34 H 1.08994 * 109.47581 * 300.00475 * 16 14 13 35 35 H 1.07995 * 120.07894 * 0.34549 * 19 18 17 36 36 H 1.07999 * 119.91220 * 180.02562 * 20 19 18 37 37 H 1.07994 * 119.87069 * 179.89534 * 21 20 19 38 38 H 1.08002 * 120.03092 * 180.02562 * 22 21 20 39 39 H 1.09005 * 109.30381 * 283.39928 * 25 24 23 40 40 H 1.09000 * 109.31363 * 163.99866 * 25 24 23 41 41 H 1.09004 * 109.36822 * 283.74563 * 26 25 24 42 42 H 1.08994 * 109.36732 * 164.12274 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5607 -2.3705 -0.0022 13 8 6.0448 -3.7394 -0.0026 14 6 7.3756 -3.9153 -0.0042 15 8 8.1115 -2.9571 -0.0047 16 6 7.9515 -5.3079 -0.0041 17 7 9.4146 -5.2311 -0.0053 18 6 10.1222 -5.1937 1.2036 19 6 9.8458 -6.1025 2.2121 20 6 10.5496 -6.0463 3.4011 21 6 11.5267 -5.0855 3.5856 22 6 11.8086 -4.1766 2.5820 23 6 11.1061 -4.2240 1.3899 24 8 11.3834 -3.3454 0.3907 25 6 12.1256 -3.8322 -0.7247 26 6 11.6020 -5.1999 -1.1580 27 6 10.0953 -5.1963 -1.1728 28 8 9.4961 -5.1618 -2.2269 29 1 -0.4850 0.8400 0.0004 30 1 3.8649 -0.3633 -0.0014 31 1 5.9248 -1.8562 0.8872 32 1 5.9234 -1.8570 -0.8928 33 1 7.6145 -5.8405 -0.8934 34 1 7.6167 -5.8395 0.8865 35 1 9.0827 -6.8533 2.0699 36 1 10.3352 -6.7545 4.1877 37 1 12.0722 -5.0450 4.5167 38 1 12.5728 -3.4279 2.7299 39 1 13.1763 -3.9197 -0.4480 40 1 12.0315 -3.1311 -1.5540 41 1 11.9548 -5.9596 -0.4605 42 1 11.9727 -5.4289 -2.1570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731239654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:38 Heat of formation + Delta-G solvation = -134.946626 kcal Electronic energy + Delta-G solvation = -30397.200437 eV Core-core repulsion = 25923.117081 eV Total energy + Delta-G solvation = -4474.083356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82798 -40.26921 -39.19964 -38.32756 -37.96248 -36.35003 -35.63081 -34.03657 -32.50103 -31.77913 -30.83967 -30.69439 -28.94066 -27.62764 -25.28386 -24.38906 -23.21237 -22.39926 -21.57046 -20.24269 -19.61541 -18.57785 -18.04504 -17.77785 -17.63088 -17.47195 -16.77222 -16.43750 -16.28796 -15.74854 -15.48615 -15.30274 -14.92293 -14.87909 -14.60882 -14.33028 -14.14914 -13.86415 -13.50046 -13.38679 -12.88807 -12.81611 -12.68825 -12.39729 -12.23352 -12.14652 -12.12687 -12.06766 -11.61954 -11.24157 -11.02485 -10.63346 -10.61576 -10.48357 -10.33455 -10.05614 -10.01669 -9.65307 -9.22945 -8.66575 -8.55356 -8.26951 -6.37181 -3.89885 0.62530 0.78406 1.87583 2.23681 2.26166 2.80997 2.97381 3.01143 3.06001 3.14109 3.39221 3.58229 3.87280 4.06004 4.27244 4.32828 4.36270 4.43639 4.56681 4.64730 4.77544 4.85622 4.91083 4.96359 5.01439 5.08117 5.09002 5.13748 5.22640 5.32815 5.40821 5.58525 5.61441 5.70765 5.77411 5.97692 6.01751 6.22383 6.52936 6.72846 7.11481 7.46993 7.54899 7.82548 8.03194 8.50227 8.85809 9.32231 9.68084 10.75148 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.002403 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.348083 B =11647.814486 C =11823.305541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.122 0.878 9 N -0.580 5.580 10 C 0.449 3.551 11 O -0.557 6.557 12 C 0.060 3.940 13 O -0.324 6.324 14 C 0.439 3.561 15 O -0.492 6.492 16 C 0.124 3.876 17 N -0.546 5.546 18 C 0.111 3.889 19 C -0.117 4.117 20 C -0.107 4.107 21 C -0.110 4.110 22 C -0.117 4.117 23 C 0.096 3.904 24 O -0.317 6.317 25 C 0.075 3.925 26 C -0.178 4.178 27 C 0.532 3.468 28 O -0.513 6.513 29 H 0.275 0.725 30 H 0.373 0.627 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.363 -11.371 5.400 32.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.220 5.220 10 C 0.234 3.766 11 O -0.439 6.439 12 C -0.018 4.018 13 O -0.238 6.238 14 C 0.279 3.721 15 O -0.379 6.379 16 C 0.001 3.999 17 N -0.274 5.274 18 C 0.019 3.981 19 C -0.137 4.137 20 C -0.125 4.125 21 C -0.128 4.128 22 C -0.136 4.136 23 C 0.050 3.950 24 O -0.233 6.233 25 C 0.000 4.000 26 C -0.219 4.219 27 C 0.322 3.678 28 O -0.387 6.387 29 H 0.086 0.914 30 H 0.206 0.794 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 29.518 -11.441 4.720 32.008 hybrid contribution 0.573 1.507 0.021 1.613 sum 30.092 -9.934 4.741 32.042 Atomic orbital electron populations 1.69616 1.05636 1.27734 1.48498 1.25032 0.95520 0.98045 0.97285 0.86682 0.79860 0.83871 0.79122 1.19396 1.19939 1.19362 1.19426 0.78665 0.96878 1.48596 0.85994 1.42039 1.07636 1.05708 1.66617 1.19181 0.86895 0.85135 0.85396 1.90598 1.69039 1.30712 1.53508 1.22735 0.95062 0.80437 1.03543 1.86528 1.22777 1.31362 1.83171 1.24054 0.81505 0.93021 0.73526 1.90709 1.60503 1.42343 1.44368 1.21000 0.78780 0.92269 1.07894 1.45202 1.05161 1.72244 1.04757 1.18170 0.96303 0.96040 0.87588 1.21016 1.01496 0.97851 0.93357 1.21099 0.95729 0.98961 0.96751 1.21128 0.97962 0.94869 0.98851 1.21221 0.99518 0.99734 0.93103 1.18739 0.96471 0.89669 0.90072 1.86100 1.73670 1.34869 1.28679 1.22778 0.94895 0.93954 0.88339 1.22460 0.91990 1.00845 1.06567 1.20632 0.90080 0.74559 0.82565 1.90775 1.70776 1.47165 1.29935 0.91407 0.79389 0.89496 0.89473 0.84803 0.85479 0.84671 0.84845 0.84986 0.84606 0.90928 0.87314 0.88467 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.48 13.96 55.50 0.77 -24.70 16 2 C 0.05 1.24 5.50 -17.47 -0.10 1.14 16 3 Si 0.88 19.47 27.74 -169.99 -4.71 14.75 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 7 C -0.31 -8.75 10.16 -14.93 -0.15 -8.91 16 8 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 9 N -0.58 -14.17 5.09 -10.97 -0.06 -14.22 16 10 C 0.45 10.74 7.86 -10.99 -0.09 10.66 16 11 O -0.56 -15.60 16.08 -14.11 -0.23 -15.83 16 12 C 0.06 1.15 5.94 36.00 0.21 1.36 16 13 O -0.32 -6.09 9.76 -45.91 -0.45 -6.54 16 14 C 0.44 7.22 8.03 36.01 0.29 7.51 16 15 O -0.49 -9.19 16.18 -18.75 -0.30 -9.49 16 16 C 0.12 1.49 5.92 -5.19 -0.03 1.46 16 17 N -0.55 -6.38 2.08 -114.51 -0.24 -6.62 16 18 C 0.11 1.12 5.02 -83.52 -0.42 0.70 16 19 C -0.12 -0.88 9.30 -39.46 -0.37 -1.25 16 20 C -0.11 -0.64 10.04 -39.55 -0.40 -1.04 16 21 C -0.11 -0.66 10.04 -39.55 -0.40 -1.06 16 22 C -0.12 -0.90 9.99 -39.48 -0.39 -1.30 16 23 C 0.10 0.98 5.47 -39.07 -0.21 0.77 16 24 O -0.32 -3.66 9.89 -19.45 -0.19 -3.85 16 25 C 0.08 0.59 6.95 37.01 0.26 0.84 16 26 C -0.18 -1.39 5.45 -28.04 -0.15 -1.54 16 27 C 0.53 6.54 6.82 -10.81 -0.07 6.46 16 28 O -0.51 -8.11 16.77 5.54 0.09 -8.02 16 29 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.37 7.99 5.76 -40.82 -0.24 7.76 16 31 H 0.09 1.49 8.13 -51.93 -0.42 1.06 16 32 H 0.09 1.53 8.13 -51.93 -0.42 1.10 16 33 H 0.13 1.53 7.51 -51.93 -0.39 1.14 16 34 H 0.13 1.11 6.93 -51.93 -0.36 0.75 16 35 H 0.14 0.77 7.41 -52.49 -0.39 0.38 16 36 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 38 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.58 7.52 -51.93 -0.39 0.19 16 42 H 0.12 0.72 8.13 -51.93 -0.42 0.30 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -38.74 366.46 -6.51 -45.25 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.70 Total: 7.93 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: -2.02 Total: 15.82 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.48 Total: -45.54 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -1.08 Total: -43.73 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.74 -6.51 -45.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.698 kcal (2) G-P(sol) polarization free energy of solvation -38.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds