Wall clock time and date at job start Wed Apr 1 2020 04:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86798 * 119.99720 * 2 1 4 4 H 1.48499 * 109.47211 * 270.00301 * 3 2 1 5 5 H 1.48500 * 109.47241 * 30.00687 * 3 2 1 6 6 H 1.48507 * 109.46618 * 150.00424 * 3 2 1 7 7 C 1.38948 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00562 * 359.97438 * 7 2 1 9 9 N 1.37100 * 119.99565 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99980 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99513 * 359.97438 * 10 9 7 12 12 C 1.50691 * 120.00076 * 179.97438 * 10 9 7 13 13 O 1.45201 * 109.47282 * 180.02562 * 12 10 9 14 14 C 1.34234 * 117.00079 * 179.97438 * 13 12 10 15 15 O 1.20820 * 119.99753 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99595 * 179.97438 * 14 13 12 17 17 N 1.46504 * 109.46580 * 180.02562 * 16 14 13 18 18 C 1.40137 * 120.32771 * 90.00761 * 17 16 14 19 19 C 1.38536 * 120.64482 * 48.54489 * 18 17 16 20 20 C 1.38279 * 119.84858 * 180.32615 * 19 18 17 21 21 C 1.38279 * 120.17163 * 0.04729 * 20 19 18 22 22 C 1.38294 * 120.25545 * 359.86771 * 21 20 19 23 23 C 1.38457 * 119.92858 * 0.29506 * 22 21 20 24 24 O 1.35908 * 120.48749 * 180.70303 * 23 22 21 25 25 C 1.42544 * 117.43757 * 104.19346 * 24 23 22 26 26 C 1.52721 * 110.44745 * 43.69656 * 25 24 23 27 27 C 1.35187 * 120.32723 * 269.97813 * 17 16 14 28 28 O 1.21295 * 120.16505 * 3.63998 * 27 17 16 29 29 H 0.96997 * 119.99997 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00394 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47350 * 59.99732 * 12 10 9 32 32 H 1.09007 * 109.47336 * 300.00182 * 12 10 9 33 33 H 1.09004 * 109.46884 * 60.00684 * 16 14 13 34 34 H 1.08994 * 109.47581 * 300.00475 * 16 14 13 35 35 H 1.07995 * 120.07894 * 0.34549 * 19 18 17 36 36 H 1.07999 * 119.91220 * 180.02562 * 20 19 18 37 37 H 1.07994 * 119.87069 * 179.89534 * 21 20 19 38 38 H 1.08002 * 120.03092 * 180.02562 * 22 21 20 39 39 H 1.09005 * 109.30381 * 283.39928 * 25 24 23 40 40 H 1.09000 * 109.31363 * 163.99866 * 25 24 23 41 41 H 1.09004 * 109.36822 * 283.74563 * 26 25 24 42 42 H 1.08994 * 109.36732 * 164.12274 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5607 -2.3705 -0.0022 13 8 6.0448 -3.7394 -0.0026 14 6 7.3756 -3.9153 -0.0042 15 8 8.1115 -2.9571 -0.0047 16 6 7.9515 -5.3079 -0.0041 17 7 9.4146 -5.2311 -0.0053 18 6 10.1222 -5.1937 1.2036 19 6 9.8458 -6.1025 2.2121 20 6 10.5496 -6.0463 3.4011 21 6 11.5267 -5.0855 3.5856 22 6 11.8086 -4.1766 2.5820 23 6 11.1061 -4.2240 1.3899 24 8 11.3834 -3.3454 0.3907 25 6 12.1256 -3.8322 -0.7247 26 6 11.6020 -5.1999 -1.1580 27 6 10.0953 -5.1963 -1.1728 28 8 9.4961 -5.1618 -2.2269 29 1 -0.4850 0.8400 0.0004 30 1 3.8649 -0.3633 -0.0014 31 1 5.9248 -1.8562 0.8872 32 1 5.9234 -1.8570 -0.8928 33 1 7.6145 -5.8405 -0.8934 34 1 7.6167 -5.8395 0.8865 35 1 9.0827 -6.8533 2.0699 36 1 10.3352 -6.7545 4.1877 37 1 12.0722 -5.0450 4.5167 38 1 12.5728 -3.4279 2.7299 39 1 13.1763 -3.9197 -0.4480 40 1 12.0315 -3.1311 -1.5540 41 1 11.9548 -5.9596 -0.4605 42 1 11.9727 -5.4289 -2.1570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731239654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:37 Heat of formation + Delta-G solvation = -162.403376 kcal Electronic energy + Delta-G solvation = -30398.391051 eV Core-core repulsion = 25923.117081 eV Total energy + Delta-G solvation = -4475.273970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.62487 -41.57027 -40.27289 -39.95650 -38.64650 -37.67261 -36.59511 -36.12400 -33.90474 -33.16986 -31.57674 -31.38409 -30.27342 -28.69153 -26.50350 -25.81920 -23.85320 -23.00023 -22.70773 -21.59475 -21.11185 -20.56309 -19.19121 -18.63075 -18.46608 -18.25512 -17.81961 -17.67279 -17.58625 -17.18610 -16.66887 -16.55895 -16.01605 -15.86604 -15.53796 -15.48942 -15.19456 -14.93948 -14.72759 -14.52656 -14.31111 -14.24603 -13.91366 -13.72282 -13.28600 -13.24417 -13.03253 -12.85144 -12.65368 -12.49426 -12.21807 -12.06151 -12.01745 -11.95689 -11.66531 -11.63056 -11.02340 -10.88796 -10.65885 -10.37758 -9.77882 -9.25458 -8.49222 -6.12394 0.04074 0.26082 0.85858 0.97584 1.27030 1.30604 1.39649 1.42753 1.69601 1.71072 2.17022 2.39050 2.73881 2.81725 3.04667 3.20543 3.52373 3.69730 3.81119 3.83473 3.87081 3.90248 4.01028 4.04813 4.07451 4.16336 4.27391 4.40581 4.43122 4.49287 4.57677 4.66172 4.78972 4.99012 5.16450 5.29959 5.40204 5.44049 5.51378 5.74314 5.81442 5.97357 6.40062 6.46475 6.52428 6.72336 6.73593 7.21208 7.72040 8.67328 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.002403 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.348083 B =11647.814486 C =11823.305541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.005 4.005 3 Si 0.960 3.040 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.234 1.234 7 C -0.334 4.334 8 H 0.063 0.937 9 N -0.575 5.575 10 C 0.450 3.550 11 O -0.605 6.605 12 C 0.070 3.930 13 O -0.342 6.342 14 C 0.439 3.561 15 O -0.516 6.516 16 C 0.124 3.876 17 N -0.544 5.544 18 C 0.082 3.918 19 C -0.118 4.118 20 C -0.104 4.104 21 C -0.101 4.101 22 C -0.124 4.124 23 C 0.075 3.925 24 O -0.349 6.349 25 C 0.071 3.929 26 C -0.170 4.170 27 C 0.521 3.479 28 O -0.562 6.562 29 H 0.283 0.717 30 H 0.392 0.608 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.162 0.838 35 H 0.151 0.849 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.855 -10.681 7.179 36.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.206 4.206 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.158 1.158 7 C -0.463 4.463 8 H 0.081 0.919 9 N -0.217 5.217 10 C 0.237 3.763 11 O -0.490 6.490 12 C -0.008 4.008 13 O -0.257 6.257 14 C 0.281 3.719 15 O -0.404 6.404 16 C 0.000 4.000 17 N -0.271 5.271 18 C -0.009 4.009 19 C -0.137 4.137 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.143 4.143 23 C 0.030 3.970 24 O -0.266 6.266 25 C -0.004 4.004 26 C -0.209 4.209 27 C 0.313 3.687 28 O -0.440 6.440 29 H 0.093 0.907 30 H 0.228 0.772 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.155 0.845 34 H 0.179 0.821 35 H 0.169 0.831 36 H 0.180 0.820 37 H 0.179 0.821 38 H 0.165 0.835 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.136 0.864 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 33.054 -10.761 6.535 35.371 hybrid contribution -0.524 1.178 -0.457 1.368 sum 32.531 -9.583 6.077 34.453 Atomic orbital electron populations 1.69774 1.07979 1.29613 1.48889 1.26061 0.96464 1.02527 0.95521 0.85437 0.79535 0.76950 0.80141 1.18057 1.19301 1.15763 1.19018 0.80582 0.95449 1.51217 0.91928 1.41820 1.06222 1.06914 1.66729 1.20062 0.89050 0.84131 0.83106 1.90572 1.70799 1.32496 1.55136 1.22552 0.90950 0.81523 1.05751 1.86542 1.24482 1.31010 1.83627 1.24944 0.80259 0.94518 0.72209 1.90691 1.60609 1.43504 1.45619 1.21232 0.79484 0.89656 1.09605 1.45294 1.04807 1.71510 1.05510 1.18421 0.97206 0.97636 0.87649 1.21289 1.01811 0.97472 0.93139 1.21482 0.94917 0.99170 0.96698 1.21520 0.97435 0.93677 0.99256 1.21439 0.99748 1.00476 0.92588 1.19039 0.97350 0.89999 0.90632 1.86031 1.74489 1.36312 1.29762 1.22971 0.96322 0.93528 0.87539 1.22498 0.88749 1.01594 1.08103 1.21495 0.91877 0.73314 0.82052 1.90741 1.72038 1.49639 1.31536 0.90722 0.77179 0.86814 0.87472 0.84545 0.82080 0.83125 0.82036 0.82123 0.83473 0.87590 0.87905 0.86429 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.14 13.96 21.66 0.30 -54.84 16 2 C -0.01 -0.30 5.50 84.93 0.47 0.16 16 3 Si 0.96 38.98 27.74 68.60 1.90 40.88 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.23 -8.17 6.52 99.48 0.65 -7.53 16 7 C -0.33 -19.73 10.16 84.04 0.85 -18.87 16 8 H 0.06 4.36 7.39 -2.91 -0.02 4.34 16 9 N -0.58 -28.11 5.09 -306.99 -1.56 -29.67 16 10 C 0.45 21.76 7.86 87.65 0.69 22.45 16 11 O -0.61 -35.29 16.08 15.74 0.25 -35.03 16 12 C 0.07 2.58 5.94 71.23 0.42 3.01 16 13 O -0.34 -12.74 9.76 -45.10 -0.44 -13.18 16 14 C 0.44 14.25 8.03 71.24 0.57 14.83 16 15 O -0.52 -19.02 16.18 21.98 0.36 -18.67 16 16 C 0.12 2.90 5.92 85.63 0.51 3.41 16 17 N -0.54 -12.34 2.08 -634.35 -1.32 -13.66 16 18 C 0.08 1.53 5.02 38.16 0.19 1.72 16 19 C -0.12 -1.46 9.30 22.35 0.21 -1.25 16 20 C -0.10 -0.88 10.04 22.29 0.22 -0.65 16 21 C -0.10 -0.85 10.04 22.29 0.22 -0.63 16 22 C -0.12 -1.61 9.99 22.34 0.22 -1.38 16 23 C 0.07 1.42 5.47 22.60 0.12 1.54 16 24 O -0.35 -7.80 9.89 -92.52 -0.92 -8.72 16 25 C 0.07 1.02 6.95 71.89 0.50 1.52 16 26 C -0.17 -2.45 5.45 29.75 0.16 -2.29 16 27 C 0.52 12.76 6.82 87.59 0.60 13.35 16 28 O -0.56 -18.28 16.77 -3.08 -0.05 -18.33 16 29 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.39 15.96 5.76 -92.71 -0.53 15.43 16 31 H 0.11 3.64 8.13 -2.39 -0.02 3.62 16 32 H 0.11 3.58 8.13 -2.38 -0.02 3.56 16 33 H 0.14 3.14 7.51 -2.39 -0.02 3.12 16 34 H 0.16 2.55 6.93 -2.39 -0.02 2.53 16 35 H 0.15 1.28 7.41 -2.91 -0.02 1.26 16 36 H 0.16 0.44 8.06 -2.91 -0.02 0.41 16 37 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 38 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.12 1.19 7.52 -2.39 -0.02 1.17 16 42 H 0.13 1.47 8.13 -2.39 -0.02 1.45 16 Total: -1.00 -90.41 366.46 4.99 -85.43 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.49 Total: 28.87 kcal Atomic # 6 Polarization: 30.95 SS G_CDS: 5.97 Total: 36.91 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -2.58 Total: -98.16 kcal Atomic # 8 Polarization: -93.13 SS G_CDS: -0.80 Total: -93.93 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.90 Total: 40.88 kcal Total: -90.41 4.99 -85.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.978 kcal (2) G-P(sol) polarization free energy of solvation -90.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds