Wall clock time and date at job start Wed Apr 1 2020 04:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38112 * 119.92511 * 179.67938 * 11 10 9 13 13 C 1.38301 * 120.06988 * 0.61755 * 12 11 10 14 14 C 1.50695 * 119.93114 * 179.70420 * 13 12 11 15 15 C 1.50705 * 109.46992 * 269.97931 * 14 13 12 16 16 O 1.20830 * 119.99794 * 359.97438 * 15 14 13 17 17 O 1.34225 * 120.00089 * 180.02562 * 15 14 13 18 18 C 1.45203 * 117.00065 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47097 * 179.97438 * 18 17 15 20 20 N 1.46500 * 109.47406 * 64.99634 * 19 18 17 21 21 C 1.34772 * 124.17849 * 269.72652 * 20 19 18 22 22 O 1.21233 * 127.15315 * 359.97438 * 21 20 19 23 23 C 1.51581 * 105.68296 * 179.97438 * 21 20 19 24 24 N 1.47316 * 103.59566 * 0.31842 * 23 21 20 25 25 C 1.33794 * 124.17886 * 90.02317 * 20 19 18 26 26 O 1.21546 * 123.76837 * 359.96292 * 25 20 19 27 27 C 1.38299 * 120.13638 * 359.68146 * 13 12 11 28 28 C 1.38101 * 120.07425 * 359.97438 * 27 13 12 29 29 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 31 31 H 1.08003 * 119.96174 * 180.31972 * 12 11 10 32 32 H 1.08998 * 109.47086 * 29.97216 * 14 13 12 33 33 H 1.08996 * 109.47192 * 149.97791 * 14 13 12 34 34 H 1.09005 * 109.46596 * 299.99451 * 18 17 15 35 35 H 1.08992 * 109.47155 * 59.99489 * 18 17 15 36 36 H 1.08999 * 109.47200 * 184.99890 * 19 18 17 37 37 H 1.09007 * 109.47256 * 304.99558 * 19 18 17 38 38 H 1.08997 * 110.76529 * 241.71309 * 23 21 20 39 39 H 1.08996 * 110.56508 * 118.83038 * 23 21 20 40 40 H 0.96993 * 126.68781 * 179.76648 * 24 23 21 41 41 H 1.07999 * 119.96503 * 180.02562 * 27 13 12 42 42 H 1.07992 * 120.03608 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8883 -0.3396 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 6 4.6507 -7.6397 0.9284 16 8 4.2217 -7.0715 1.9047 17 8 5.3648 -8.7676 1.0680 18 6 5.5811 -9.2477 2.4212 19 6 6.4084 -10.5341 2.3798 20 7 7.7440 -10.2392 1.8550 21 6 8.0730 -10.2918 0.5491 22 8 7.3471 -10.5815 -0.3777 23 6 9.5392 -9.9133 0.4803 24 7 9.9020 -9.6761 1.8882 25 6 8.7893 -9.8899 2.6135 26 8 8.7396 -9.7796 3.8229 27 6 4.2024 -4.5970 -0.2043 28 6 3.4573 -3.4394 -0.0956 29 1 -0.4850 0.8400 0.0004 30 1 0.3579 -4.7892 -0.2301 31 1 1.6954 -6.8450 -0.4355 32 1 3.8358 -7.8149 -1.0361 33 1 5.3320 -6.8560 -0.9360 34 1 6.1154 -8.4900 2.9944 35 1 4.6196 -9.4495 2.8931 36 1 6.4956 -10.9426 3.3865 37 1 5.9167 -11.2617 1.7339 38 1 9.6771 -9.0069 -0.1092 39 1 10.1269 -10.7322 0.0656 40 1 10.7732 -9.4164 2.2263 41 1 5.2812 -4.5470 -0.1947 42 1 3.9527 -2.4845 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732363071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:08 Heat of formation + Delta-G solvation = -121.767861 kcal Electronic energy + Delta-G solvation = -29322.773069 eV Core-core repulsion = 24849.261187 eV Total energy + Delta-G solvation = -4473.511882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.72596 -40.42294 -38.98587 -38.92695 -37.10750 -36.50144 -36.28737 -35.19052 -32.53010 -31.61928 -30.54274 -30.17437 -28.13906 -26.94132 -25.26282 -24.28899 -23.28763 -22.00314 -21.70160 -20.76139 -20.16248 -18.50939 -18.00323 -17.74832 -17.63257 -17.08644 -16.97129 -16.64555 -16.21107 -15.70087 -15.63375 -14.79667 -14.61884 -14.59851 -14.48755 -14.33091 -14.18052 -13.80538 -13.56809 -13.40027 -13.21001 -13.12184 -12.72079 -12.49156 -12.17197 -11.88173 -11.55357 -11.41297 -11.29621 -10.91381 -10.79978 -10.76274 -10.65643 -10.62519 -10.42651 -10.38576 -10.19338 -9.98188 -9.33996 -8.84179 -8.17615 -7.20597 -6.45842 -4.04284 1.24917 1.71441 2.10066 2.23299 2.36359 2.53101 2.67647 2.81819 3.12872 3.13629 3.19348 3.54343 3.96279 4.27514 4.36531 4.48807 4.54607 4.58904 4.74372 4.84214 4.97727 5.09204 5.10489 5.16566 5.22166 5.29237 5.34305 5.45676 5.64565 5.70465 5.82943 6.19905 6.24606 6.38326 6.40752 6.57182 6.68770 6.89292 6.97755 7.04098 7.21674 7.33602 7.43202 7.64458 7.80679 7.89739 7.99420 8.99785 9.69669 10.72160 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.001954 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.195764 B =14328.924114 C =14862.482602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.159 3.841 11 C -0.192 4.192 12 C -0.056 4.056 13 C -0.184 4.184 14 C -0.048 4.048 15 C 0.455 3.545 16 O -0.490 6.490 17 O -0.358 6.358 18 C 0.046 3.954 19 C 0.124 3.876 20 N -0.577 5.577 21 C 0.522 3.478 22 O -0.451 6.451 23 C 0.061 3.939 24 N -0.729 5.729 25 C 0.700 3.300 26 O -0.543 6.543 27 C -0.053 4.053 28 C -0.233 4.233 29 H 0.270 0.730 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.442 0.558 41 H 0.104 0.896 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.852 -22.499 -0.187 30.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.105 3.895 11 C -0.211 4.211 12 C -0.074 4.074 13 C -0.185 4.185 14 C -0.086 4.086 15 C 0.297 3.703 16 O -0.375 6.375 17 O -0.276 6.276 18 C -0.029 4.029 19 C 0.003 3.997 20 N -0.325 5.325 21 C 0.308 3.692 22 O -0.319 6.319 23 C -0.066 4.066 24 N -0.394 5.394 25 C 0.401 3.599 26 O -0.417 6.417 27 C -0.071 4.071 28 C -0.252 4.252 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.286 0.714 41 H 0.122 0.878 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 18.740 -22.241 0.312 29.085 hybrid contribution 0.913 1.023 0.377 1.422 sum 19.653 -21.219 0.689 28.930 Atomic orbital electron populations 1.70048 1.05969 1.27606 1.45995 1.25308 0.95859 0.98875 0.96527 0.85633 0.79134 0.80315 0.78256 1.19094 1.20118 1.20127 1.21391 0.91856 0.80787 1.52714 0.88970 1.83977 1.34417 1.11504 1.77998 1.19408 0.90288 0.88045 0.91740 1.20162 0.99570 0.90272 1.11085 1.20426 0.92631 0.96788 0.97586 1.18640 0.93302 0.92324 1.14187 1.20075 1.01979 0.96336 0.90175 1.24257 0.74751 0.77780 0.93544 1.90717 1.47326 1.58397 1.41072 1.86580 1.67883 1.41649 1.31512 1.23387 1.00914 0.96088 0.82557 1.21808 0.78499 0.96890 1.02469 1.46338 1.12066 1.64435 1.09611 1.20832 0.89966 0.76134 0.82265 1.90855 1.57595 1.43559 1.39859 1.22505 0.93695 1.05407 0.85039 1.45420 1.12627 1.74354 1.07021 1.15903 0.80898 0.77790 0.85318 1.91044 1.83687 1.56441 1.10495 1.20517 0.98088 0.91794 0.96747 1.21105 0.93801 0.98815 1.11500 0.92035 0.86380 0.87162 0.87688 0.88010 0.90488 0.89154 0.86354 0.87353 0.85757 0.85892 0.71403 0.87756 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.44 13.67 55.48 0.76 -24.69 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 8 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 9 O -0.18 -5.10 9.76 0.05 0.00 -5.10 16 10 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 11 C -0.19 -4.17 9.99 -39.39 -0.39 -4.56 16 12 C -0.06 -1.03 9.69 -39.60 -0.38 -1.42 16 13 C -0.18 -3.21 4.38 -104.58 -0.46 -3.66 16 14 C -0.05 -0.64 5.94 -29.04 -0.17 -0.81 16 15 C 0.45 6.64 7.95 36.01 0.29 6.93 16 16 O -0.49 -9.01 15.78 -18.75 -0.30 -9.31 16 17 O -0.36 -4.39 9.90 -39.24 -0.39 -4.78 16 18 C 0.05 0.46 5.81 37.16 0.22 0.68 16 19 C 0.12 0.92 6.11 -4.04 -0.02 0.90 16 20 N -0.58 -4.63 2.57 -120.73 -0.31 -4.94 16 21 C 0.52 3.88 8.03 -10.55 -0.08 3.79 16 22 O -0.45 -4.69 17.75 5.60 0.10 -4.59 16 23 C 0.06 0.19 7.97 -4.31 -0.03 0.16 16 24 N -0.73 -3.30 6.58 -65.73 -0.43 -3.73 16 25 C 0.70 5.98 8.62 -88.02 -0.76 5.22 16 26 O -0.54 -6.60 17.48 5.33 0.09 -6.51 16 27 C -0.05 -1.01 9.69 -39.61 -0.38 -1.39 16 28 C -0.23 -5.20 9.17 -39.39 -0.36 -5.56 16 29 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 31 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 32 H 0.10 1.16 8.08 -51.93 -0.42 0.74 16 33 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 34 H 0.08 0.90 8.13 -51.93 -0.42 0.47 16 35 H 0.09 0.84 8.13 -51.93 -0.42 0.42 16 36 H 0.12 0.70 7.86 -51.93 -0.41 0.29 16 37 H 0.11 0.69 8.00 -51.93 -0.42 0.28 16 38 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.12 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.44 1.00 8.96 -40.82 -0.37 0.63 16 41 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.13 2.83 5.64 -52.49 -0.30 2.54 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -38.11 376.21 -7.14 -45.25 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.69 Total: 2.90 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -2.62 Total: -5.83 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.02 Total: -33.35 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.49 Total: -30.29 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.11 -7.14 -45.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732363071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.518 kcal (2) G-P(sol) polarization free energy of solvation -38.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds