Wall clock time and date at job start Wed Apr 1 2020 04:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38112 * 119.92511 * 179.67938 * 11 10 9 13 13 C 1.38301 * 120.06988 * 0.61755 * 12 11 10 14 14 C 1.50695 * 119.93114 * 179.70420 * 13 12 11 15 15 C 1.50705 * 109.46992 * 269.97931 * 14 13 12 16 16 O 1.20830 * 119.99794 * 359.97438 * 15 14 13 17 17 O 1.34225 * 120.00089 * 180.02562 * 15 14 13 18 18 C 1.45203 * 117.00065 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47097 * 179.97438 * 18 17 15 20 20 N 1.46500 * 109.47406 * 64.99634 * 19 18 17 21 21 C 1.34772 * 124.17849 * 269.72652 * 20 19 18 22 22 O 1.21233 * 127.15315 * 359.97438 * 21 20 19 23 23 C 1.51581 * 105.68296 * 179.97438 * 21 20 19 24 24 N 1.47316 * 103.59566 * 0.31842 * 23 21 20 25 25 C 1.33794 * 124.17886 * 90.02317 * 20 19 18 26 26 O 1.21546 * 123.76837 * 359.96292 * 25 20 19 27 27 C 1.38299 * 120.13638 * 359.68146 * 13 12 11 28 28 C 1.38101 * 120.07425 * 359.97438 * 27 13 12 29 29 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 31 31 H 1.08003 * 119.96174 * 180.31972 * 12 11 10 32 32 H 1.08998 * 109.47086 * 29.97216 * 14 13 12 33 33 H 1.08996 * 109.47192 * 149.97791 * 14 13 12 34 34 H 1.09005 * 109.46596 * 299.99451 * 18 17 15 35 35 H 1.08992 * 109.47155 * 59.99489 * 18 17 15 36 36 H 1.08999 * 109.47200 * 184.99890 * 19 18 17 37 37 H 1.09007 * 109.47256 * 304.99558 * 19 18 17 38 38 H 1.08997 * 110.76529 * 241.71309 * 23 21 20 39 39 H 1.08996 * 110.56508 * 118.83038 * 23 21 20 40 40 H 0.96993 * 126.68781 * 179.76648 * 24 23 21 41 41 H 1.07999 * 119.96503 * 180.02562 * 27 13 12 42 42 H 1.07992 * 120.03608 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8883 -0.3396 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 6 4.6507 -7.6397 0.9284 16 8 4.2217 -7.0715 1.9047 17 8 5.3648 -8.7676 1.0680 18 6 5.5811 -9.2477 2.4212 19 6 6.4084 -10.5341 2.3798 20 7 7.7440 -10.2392 1.8550 21 6 8.0730 -10.2918 0.5491 22 8 7.3471 -10.5815 -0.3777 23 6 9.5392 -9.9133 0.4803 24 7 9.9020 -9.6761 1.8882 25 6 8.7893 -9.8899 2.6135 26 8 8.7396 -9.7796 3.8229 27 6 4.2024 -4.5970 -0.2043 28 6 3.4573 -3.4394 -0.0956 29 1 -0.4850 0.8400 0.0004 30 1 0.3579 -4.7892 -0.2301 31 1 1.6954 -6.8450 -0.4355 32 1 3.8358 -7.8149 -1.0361 33 1 5.3320 -6.8560 -0.9360 34 1 6.1154 -8.4900 2.9944 35 1 4.6196 -9.4495 2.8931 36 1 6.4956 -10.9426 3.3865 37 1 5.9167 -11.2617 1.7339 38 1 9.6771 -9.0069 -0.1092 39 1 10.1269 -10.7322 0.0656 40 1 10.7732 -9.4164 2.2263 41 1 5.2812 -4.5470 -0.1947 42 1 3.9527 -2.4845 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732363071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:07 Heat of formation + Delta-G solvation = -149.729768 kcal Electronic energy + Delta-G solvation = -29323.985588 eV Core-core repulsion = 24849.261187 eV Total energy + Delta-G solvation = -4474.724401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.28070 -41.59317 -40.69186 -39.57624 -38.57110 -37.60625 -37.14423 -35.84761 -34.43427 -33.09172 -31.82667 -31.32442 -28.65198 -28.36468 -27.14382 -25.09875 -23.86616 -23.67992 -22.98153 -21.58626 -21.34186 -19.87701 -19.06967 -18.88308 -18.77089 -18.25818 -17.75228 -17.55624 -17.15002 -16.58342 -16.34785 -16.29568 -16.19256 -15.94070 -15.53085 -15.23810 -15.20622 -15.01761 -14.76465 -14.52493 -14.45914 -14.24708 -13.95806 -13.71017 -13.61573 -13.05192 -12.97847 -12.84725 -12.53249 -12.35215 -12.31540 -12.15321 -12.10311 -11.72087 -11.55963 -11.25764 -11.20778 -10.95229 -10.81412 -10.39445 -9.80535 -8.97433 -8.49063 -6.17357 0.55456 0.57941 0.70495 1.18744 1.23016 1.33904 1.41561 1.52598 1.68994 1.97402 2.16435 2.32111 2.81249 3.10836 3.14467 3.48154 3.64121 3.73862 3.77524 3.93528 3.99760 4.06246 4.15473 4.25098 4.35519 4.39603 4.42425 4.51094 4.55494 4.65215 4.66793 4.76255 4.78164 5.02941 5.12348 5.25013 5.36727 5.52139 5.68272 5.70732 5.85096 6.00878 6.04317 6.18020 6.46585 6.77627 6.95427 7.10639 7.75636 8.74398 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.001954 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.195764 B =14328.924114 C =14862.482602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.024 4.024 3 Si 1.021 2.979 4 H -0.251 1.251 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.231 6.231 10 C 0.116 3.884 11 C -0.206 4.206 12 C -0.052 4.052 13 C -0.159 4.159 14 C -0.047 4.047 15 C 0.462 3.538 16 O -0.536 6.536 17 O -0.350 6.350 18 C 0.044 3.956 19 C 0.126 3.874 20 N -0.582 5.582 21 C 0.515 3.485 22 O -0.484 6.484 23 C 0.070 3.930 24 N -0.712 5.712 25 C 0.694 3.306 26 O -0.588 6.588 27 C -0.055 4.055 28 C -0.244 4.244 29 H 0.273 0.727 30 H 0.115 0.885 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.150 0.850 39 H 0.160 0.840 40 H 0.453 0.547 41 H 0.140 0.860 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.406 -24.776 -1.455 34.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.221 4.221 3 Si 0.840 3.160 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.490 4.490 8 H 0.119 0.881 9 O -0.138 6.138 10 C 0.066 3.934 11 C -0.225 4.225 12 C -0.070 4.070 13 C -0.160 4.160 14 C -0.084 4.084 15 C 0.306 3.694 16 O -0.425 6.425 17 O -0.267 6.267 18 C -0.030 4.030 19 C 0.005 3.995 20 N -0.329 5.329 21 C 0.304 3.696 22 O -0.354 6.354 23 C -0.056 4.056 24 N -0.376 5.376 25 C 0.394 3.606 26 O -0.465 6.465 27 C -0.073 4.073 28 C -0.263 4.263 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.167 0.833 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.168 0.832 39 H 0.177 0.823 40 H 0.300 0.700 41 H 0.157 0.843 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 22.377 -24.590 -0.995 33.263 hybrid contribution -0.029 1.305 0.752 1.506 sum 22.348 -23.285 -0.244 32.275 Atomic orbital electron populations 1.70190 1.08042 1.28795 1.48802 1.26629 0.96897 1.02798 0.95810 0.84505 0.78208 0.74699 0.78619 1.17472 1.19085 1.19413 1.21871 0.92525 0.81417 1.53202 0.88128 1.83942 1.35994 1.12631 1.81206 1.19973 0.91654 0.88012 0.93759 1.20446 1.00033 0.90603 1.11435 1.20900 0.93280 0.97069 0.95784 1.19175 0.93444 0.93856 1.09502 1.20195 1.03318 0.94738 0.90124 1.24362 0.73937 0.77788 0.93301 1.90730 1.49345 1.59805 1.42604 1.86570 1.66938 1.40482 1.32703 1.23555 1.01584 0.96620 0.81289 1.21856 0.78372 0.95581 1.03704 1.46462 1.12054 1.64217 1.10167 1.21508 0.91547 0.75156 0.81388 1.90838 1.58936 1.45172 1.40472 1.22743 0.90905 1.07762 0.84176 1.45424 1.12059 1.72758 1.07404 1.16100 0.81797 0.77745 0.84934 1.91015 1.84466 1.58595 1.12441 1.20934 0.99797 0.91094 0.95510 1.21222 0.93107 1.00041 1.11947 0.91783 0.86719 0.83259 0.84239 0.84718 0.92330 0.88524 0.85092 0.86067 0.83213 0.82299 0.70013 0.84258 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.42 13.67 21.62 0.30 -57.12 16 2 C -0.02 -1.39 5.49 84.84 0.47 -0.92 16 3 Si 1.02 43.60 29.55 68.60 2.03 45.62 16 4 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.41 -24.70 9.49 67.92 0.64 -24.06 16 8 H 0.10 5.53 5.20 -2.91 -0.02 5.52 16 9 O -0.23 -14.34 9.76 -22.72 -0.22 -14.56 16 10 C 0.12 6.03 6.65 22.58 0.15 6.18 16 11 C -0.21 -9.13 9.99 22.39 0.22 -8.91 16 12 C -0.05 -1.82 9.69 22.25 0.22 -1.60 16 13 C -0.16 -5.04 4.38 -19.84 -0.09 -5.13 16 14 C -0.05 -1.01 5.94 29.10 0.17 -0.84 16 15 C 0.46 12.01 7.95 71.24 0.57 12.58 16 16 O -0.54 -18.76 15.78 21.95 0.35 -18.42 16 17 O -0.35 -7.57 9.90 -51.37 -0.51 -8.08 16 18 C 0.04 0.83 5.81 71.98 0.42 1.25 16 19 C 0.13 1.65 6.11 86.38 0.53 2.18 16 20 N -0.58 -8.08 2.57 -773.11 -1.99 -10.06 16 21 C 0.52 6.08 8.03 87.94 0.71 6.79 16 22 O -0.48 -8.67 17.75 -2.88 -0.05 -8.72 16 23 C 0.07 0.14 7.97 85.76 0.68 0.83 16 24 N -0.71 -4.22 6.58 -480.31 -3.16 -7.38 16 25 C 0.69 10.57 8.62 179.44 1.55 12.12 16 26 O -0.59 -13.92 17.48 -3.86 -0.07 -13.99 16 27 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 28 C -0.24 -11.05 9.17 22.39 0.21 -10.85 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 31 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.14 2.21 8.08 -2.39 -0.02 2.19 16 33 H 0.13 2.17 8.08 -2.39 -0.02 2.16 16 34 H 0.06 1.33 8.13 -2.38 -0.02 1.32 16 35 H 0.10 1.68 8.13 -2.39 -0.02 1.66 16 36 H 0.13 1.39 7.86 -2.39 -0.02 1.37 16 37 H 0.12 1.29 8.00 -2.38 -0.02 1.27 16 38 H 0.15 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.16 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.45 0.66 8.96 -92.71 -0.83 -0.17 16 41 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 42 H 0.12 5.46 5.64 -2.91 -0.02 5.45 16 Total: -1.00 -90.68 376.21 3.59 -87.10 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.26 Total: 17.75 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 6.66 Total: -12.14 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -4.85 Total: -74.57 kcal Atomic # 8 Polarization: -63.26 SS G_CDS: -0.50 Total: -63.76 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -90.68 3.59 -87.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732363071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.635 kcal (2) G-P(sol) polarization free energy of solvation -90.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds